View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9083_low_9 (Length: 698)
Name: NF9083_low_9
Description: NF9083
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9083_low_9 |
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Alignment Details
Target: chr8 (Bit Score: 430; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 430; E-Value: 0
Query Start/End: Original strand, 171 - 608
Target Start/End: Complemental strand, 37173525 - 37173088
Alignment:
| Q |
171 |
atgttcatccccgtctttgtcttcctggctcaaactgactgacttggttgccagaattgattctgaaacaccaattgaatccgaagacactgtcaatgga |
270 |
Q |
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| T |
37173525 |
atgttcatccccatctttgtcttcctggctcaaactgactgacttggttgccagaattgattctgaaacaccaattgaatccgaagacactgtcaatgga |
37173426 |
T |
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| Q |
271 |
tatcaagtgaagaaagaattcatgccaacgttaaaaaagattattgatgatcatggagatatagcaaaagagtgcaccgaagaaagtgtggaataccgtt |
370 |
Q |
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| T |
37173425 |
tatcaagtgaagaaagaattcatgccaacgttaaaaaagattattgatgatcatggagatatagcaaaagagtgcaccaaagaaagtgtggaataccgtt |
37173326 |
T |
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| Q |
371 |
cggcattgttgcagttgatatgtggaatcatattagagttgaaaatgaaaaatttgatcgaaactgaagaaggtatcttgaaaagaaatttttgtattgt |
470 |
Q |
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| T |
37173325 |
cggcattgttgcagttgatatgtggaatcatattagagttgaaaatgaaaaatttgatcgaaactgaagaaggtatcttgaaaagaaatttttgtattgt |
37173226 |
T |
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| Q |
471 |
tgatgtaataagaaacaagaacgtggaagttgactggctttacaagaggataactgctgcgcttgaggcaaagaagacacttacacaatttggcacgcta |
570 |
Q |
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| T |
37173225 |
tgatgtaataagaaacaagaacgtggaagttgactggctttacaagaggataactgctgcgcttgaggcaaagaagacacttacacaatttggcacgcta |
37173126 |
T |
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| Q |
571 |
taagagaaaagtgacaataatatgaggtccattgaaga |
608 |
Q |
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| T |
37173125 |
taagagaaaagtgacaataatatgaggtccattgaaga |
37173088 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 176; E-Value: 2e-94
Query Start/End: Original strand, 1 - 176
Target Start/End: Complemental strand, 37178223 - 37178048
Alignment:
| Q |
1 |
gaatccccttcaagagacctagtaggtgcacccgagaagatgggggaatcaggggaggctggtatgtcaatttccaactattcaaatcaagtggttaggc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37178223 |
gaatccccttcaagagacctagtaggtgcacccgagaagatgggggaatcaggggaggctggtatgtcaatttccaactattcaaatcaagtggttaggc |
37178124 |
T |
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| Q |
101 |
agaatacatttaaagaaagtatccgtggagaaagggagcctaattatgacaattttgtttcaaggtctggatgttc |
176 |
Q |
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| T |
37178123 |
agaatacatttaaagaaagtatccgtggagaaagggagcctaattatgacaattttgtttcaaggtctggatgttc |
37178048 |
T |
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