View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9084_low_11 (Length: 287)
Name: NF9084_low_11
Description: NF9084
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9084_low_11 |
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| [»] chr6 (3 HSPs) |
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| [»] scaffold0103 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 212; Significance: 1e-116; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 13 - 287
Target Start/End: Original strand, 2593291 - 2593569
Alignment:
| Q |
13 |
cacaaataactttccaatcaatatctaacaatacaatgtacactcatgtgaaaccaagaaagagttgtatactaaaagtacttaattacgggattggact |
112 |
Q |
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| T |
2593291 |
cacaaataactttccaatcaatatctaacaatacaatatacactcatgtgaaaccaagaaagagttgtatactaaaagtacttaattatgggattggact |
2593390 |
T |
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| Q |
113 |
ctt-----atgattttgttagcatgaaataaccacttaataccccctcaatatttatcctttccaccaacaattgaatatgggtaaaagttacctacaaa |
207 |
Q |
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||| |||||||||||||||||||| |||||||||||| | |||||||||||||||||||||||||||| ||||||||||| ||||||||||||||| |
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| T |
2593391 |
cttatttgatgattttgttagcatgaaagaaccacttaatatcacctcaatatttatcctttccaccaacaactgaatatgggttaaagttacctacaaa |
2593490 |
T |
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| Q |
208 |
aaatgggacgtttttcaagtgtcttcgatgcaagcgttttcctaaggcgacgtttcttcttgatttttgcgccctttttt |
287 |
Q |
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| T |
2593491 |
gaa-aggacgtttttcaagtgtcttcgatgcaagcgttttcctaatgcgacgtttcttcttgatttttgcgccctttttt |
2593569 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 143 - 271
Target Start/End: Original strand, 2635492 - 2635619
Alignment:
| Q |
143 |
ttaataccccctcaatatttatcctttccaccaacaattgaatatgggtaaaagttacctacaaaaaatgggacgtttttcaagtgtcttcgatgcaagc |
242 |
Q |
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|||||| | |||||| ||||||| ||||||||||||||||||| |||||| ||||| |||| |||||||||||| ||||||||| ||||||||||| ||| |
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| T |
2635492 |
ttaatatcacctcaacatttatcttttccaccaacaattgaatgtgggtagaagtttccta-aaaaaatgggacatttttcaagcgtcttcgatgcgagc |
2635590 |
T |
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| Q |
243 |
gttttcctaaggcgacgtttcttcttgat |
271 |
Q |
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| T |
2635591 |
gtttgtctaaggcgacgttttttcttgat |
2635619 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 13 - 79
Target Start/End: Original strand, 2635266 - 2635332
Alignment:
| Q |
13 |
cacaaataactttccaatcaatatctaacaatacaatgtacactcatgtgaaaccaagaaagagttg |
79 |
Q |
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||||||||||||| |||||| ||||||||| || ||||||| |||||| ||||| |||||| ||||| |
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| T |
2635266 |
cacaaataacttttcaatcactatctaacattataatgtactctcatgcgaaactaagaaatagttg |
2635332 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0103 (Bit Score: 69; Significance: 5e-31; HSPs: 2)
Name: scaffold0103
Description:
Target: scaffold0103; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 143 - 271
Target Start/End: Complemental strand, 4517 - 4390
Alignment:
| Q |
143 |
ttaataccccctcaatatttatcctttccaccaacaattgaatatgggtaaaagttacctacaaaaaatgggacgtttttcaagtgtcttcgatgcaagc |
242 |
Q |
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|||||| | |||||| ||||||| ||||||||||||||||||| |||||| ||||| |||| |||||||||||| ||||||||| ||||||||||| ||| |
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| T |
4517 |
ttaatatcacctcaacatttatcttttccaccaacaattgaatgtgggtagaagtttccta-aaaaaatgggacatttttcaagcgtcttcgatgcgagc |
4419 |
T |
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| Q |
243 |
gttttcctaaggcgacgtttcttcttgat |
271 |
Q |
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|||| |||||||||||||| |||||||| |
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| T |
4418 |
gtttgtctaaggcgacgttttttcttgat |
4390 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0103; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 13 - 79
Target Start/End: Complemental strand, 4743 - 4677
Alignment:
| Q |
13 |
cacaaataactttccaatcaatatctaacaatacaatgtacactcatgtgaaaccaagaaagagttg |
79 |
Q |
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||||||||||||| |||||| ||||||||| || ||||||| |||||| ||||| |||||| ||||| |
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| T |
4743 |
cacaaataacttttcaatcactatctaacattataatgtactctcatgcgaaactaagaaatagttg |
4677 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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