View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9084_low_12 (Length: 240)

Name: NF9084_low_12
Description: NF9084
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9084_low_12
NF9084_low_12
[»] chr5 (9 HSPs)
chr5 (1-225)||(13393724-13393948)
chr5 (1-175)||(13389317-13389491)
chr5 (8-175)||(13385503-13385670)
chr5 (1-147)||(13412939-13413085)
chr5 (8-140)||(13426182-13426314)
chr5 (1-140)||(13419291-13419430)
chr5 (8-128)||(13446854-13446974)
chr5 (1-146)||(13453789-13453934)
chr5 (10-138)||(13373035-13373163)
[»] chr4 (1 HSPs)
chr4 (1-179)||(47601074-47601252)
[»] chr8 (1 HSPs)
chr8 (10-110)||(28430709-28430809)


Alignment Details
Target: chr5 (Bit Score: 225; Significance: 1e-124; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 13393724 - 13393948
Alignment:
Q  1 ataggtattgttggtcttggtggacttggtcacttgggtgtgaagtttgcaaaagcttttggagctaatgtaacagtaattagtacatcacccaacaaag 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13393724 ataggtattgttggtcttggtggacttggtcacttgggtgtgaagtttgcaaaagcttttggagctaatgtaacagtaattagtacatcacccaacaaag 13393823  T
Q  101 agaaagaagcaatagaaaacctaggagctgattcatttcttataagtcatgaccaagataaaatgcaggtacaaatacataatcaaagttagaataatat 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13393824 agaaagaagcaatagaaaacctaggagctgattcatttcttataagtcatgaccaagataaaatgcaggtacaaatacataatcaaagttagaataatat 13393923  T
Q  201 tcataattggaaatggtaattgatt 225  Q
    |||||||||||||||||||||||||    
T  13393924 tcataattggaaatggtaattgatt 13393948  T

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Target: chr5; HSP #2
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 1 - 175
Target Start/End: Original strand, 13389317 - 13389491
Alignment:
Q  1 ataggtattgttggtcttggtggacttggtcacttgggtgtgaagtttgcaaaagcttttggagctaatgtaacagtaattagtacatcacccaacaaag 100  Q
    |||||| |||||||||||||||| ||||||||| ||| |||||| ||||| ||||| ||||| || | ||||||||| ||||||||||||||||||||||    
T  13389317 ataggtgttgttggtcttggtgggcttggtcacatggctgtgaaatttgccaaagcatttggtgcgattgtaacagtgattagtacatcacccaacaaag 13389416  T
Q  101 agaaagaagcaatagaaaacctaggagctgattcatttcttataagtcatgaccaagataaaatgcaggtacaaa 175  Q
    ||||||||||||||||| || ||||||| ||||||||||| ||||||| ||||||||| ||||||||||||||||    
T  13389417 agaaagaagcaatagaacacttaggagccgattcatttctgataagtcgtgaccaagagaaaatgcaggtacaaa 13389491  T

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Target: chr5; HSP #3
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 8 - 175
Target Start/End: Original strand, 13385503 - 13385670
Alignment:
Q  8 ttgttggtcttggtggacttggtcacttgggtgtgaagtttgcaaaagcttttggagctaatgtaacagtaattagtacatcacccaacaaagagaaaga 107  Q
    |||||||||||||||| ||||||||| ||| |||||| ||||| ||||||||||| |||||||| || ||||||||||||||  | | |||||| || ||    
T  13385503 ttgttggtcttggtgggcttggtcacatggctgtgaaatttgccaaagcttttggtgctaatgtgaccgtaattagtacatctgctagcaaagaaaagga 13385602  T
Q  108 agcaatagaaaacctaggagctgattcatttcttataagtcatgaccaagataaaatgcaggtacaaa 175  Q
    ||||| |||| || ||||||||||||||||||| ||||||| ||||||||||||||||||||||||||    
T  13385603 agcaaaagaacacttaggagctgattcatttctgataagtcgtgaccaagataaaatgcaggtacaaa 13385670  T

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Target: chr5; HSP #4
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 147
Target Start/End: Complemental strand, 13413085 - 13412939
Alignment:
Q  1 ataggtattgttggtcttggtggacttggtcacttgggtgtgaagtttgcaaaagcttttggagctaatgtaacagtaattagtacatcacccaacaaag 100  Q
    |||||| |||||||||||||||||||||| ||  ||| |||||| ||||| |||||||| || |||||||| || |||||||||||||| || |||||||    
T  13413085 ataggtgttgttggtcttggtggacttggccatatggctgtgaaatttgccaaagctttcggtgctaatgttaccgtaattagtacatcgcctaacaaag 13412986  T
Q  101 agaaagaagcaatagaaaacctaggagctgattcatttcttataagt 147  Q
    | || |||||||||||| || ||||||||||||||||||| ||||||    
T  13412985 aaaaggaagcaatagaacacttaggagctgattcatttctgataagt 13412939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 8 - 140
Target Start/End: Complemental strand, 13426314 - 13426182
Alignment:
Q  8 ttgttggtcttggtggacttggtcacttgggtgtgaagtttgcaaaagcttttggagctaatgtaacagtaattagtacatcacccaacaaagagaaaga 107  Q
    |||||||||||||||||||||||||  ||| |||||| || || ||||||||||| |||||||||||||||||||||||||| || | |||||| || ||    
T  13426314 ttgttggtcttggtggacttggtcatatggctgtgaaattcgccaaagcttttggtgctaatgtaacagtaattagtacatcgcctagcaaagaaaagga 13426215  T
Q  108 agcaatagaaaacctaggagctgattcatttct 140  Q
    ||| |||||| |  |||||||||| || |||||    
T  13426214 agcgatagaacatttaggagctgactcgtttct 13426182  T

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Target: chr5; HSP #6
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 140
Target Start/End: Complemental strand, 13419430 - 13419291
Alignment:
Q  1 ataggtattgttggtcttggtggacttggtcacttgggtgtgaagtttgcaaaagcttttggagctaatgtaacagtaattagtacatcacccaacaaag 100  Q
    |||||| |||||||||||||||||||||| ||  ||| |||||| |||||||||||||| || |||||||| || |||||||||||||| ||  ||||||    
T  13419430 ataggtgttgttggtcttggtggacttggccatatggctgtgaaatttgcaaaagctttcggtgctaatgtgaccgtaattagtacatcgcctcacaaag 13419331  T
Q  101 agaaagaagcaatagaaaacctaggagctgattcatttct 140  Q
    | || |||||||||||| || | |||||||| || |||||    
T  13419330 aaaaggaagcaatagaacacttgggagctgactcgtttct 13419291  T

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Target: chr5; HSP #7
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 8 - 128
Target Start/End: Complemental strand, 13446974 - 13446854
Alignment:
Q  8 ttgttggtcttggtggacttggtcacttgggtgtgaagtttgcaaaagcttttggagctaatgtaacagtaattagtacatcacccaacaaagagaaaga 107  Q
    |||||||||||||||||||||||||  ||| |||||| ||||| ||||||||||| ||||| || || ||||||||||| || || || || || || ||    
T  13446974 ttgttggtcttggtggacttggtcatatggctgtgaaatttgctaaagcttttggtgctaaagtgaccgtaattagtacgtcgcctaaaaaggaaaagga 13446875  T
Q  108 agcaatagaaaacctaggagc 128  Q
    |||||||||| || |||||||    
T  13446874 agcaatagaacacttaggagc 13446854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 146
Target Start/End: Complemental strand, 13453934 - 13453789
Alignment:
Q  1 ataggtattgttggtcttggtggacttggtcacttgggtgtgaagtttgcaaaagcttttggagctaatgtaacagtaattagtacatcacccaacaaag 100  Q
    |||||| |||||||||||||||||||||| ||  |||  ||||| || || |||||||| || |||||||| || ||||||||||||||||| || || |    
T  13453934 ataggtgttgttggtcttggtggacttggccatatggccgtgaaattcgccaaagctttcggtgctaatgtgaccgtaattagtacatcacctaaaaagg 13453835  T
Q  101 agaaagaagcaatagaaaacctaggagctgattcatttcttataag 146  Q
    | || |||||| ||||| || || |||| || |||||||| |||||    
T  13453834 aaaaggaagcattagaacacttacgagcggactcatttctaataag 13453789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 10 - 138
Target Start/End: Complemental strand, 13373163 - 13373035
Alignment:
Q  10 gttggtcttggtggacttggtcacttgggtgtgaagtttgcaaaagcttttggagctaatgtaacagtaattagtacatcacccaacaaagagaaagaag 109  Q
    ||||||||||||||| | |||||  ||| |||||| ||| | ||||||||||| |||||||||||||| || || || || || |||||| |||| ||||    
T  13373163 gttggtcttggtggattaggtcatatggctgtgaaatttaccaaagcttttggtgctaatgtaacagtgataagcacttctcctaacaaaaagaaggaag 13373064  T
Q  110 caatagaaaacctaggagctgattcattt 138  Q
    | || ||| || |||||||||| ||||||    
T  13373063 ccattgaacacttaggagctgactcattt 13373035  T

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Target: chr4 (Bit Score: 95; Significance: 1e-46; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 1 - 179
Target Start/End: Complemental strand, 47601252 - 47601074
Alignment:
Q  1 ataggtattgttggtcttggtggacttggtcacttgggtgtgaagtttgcaaaagcttttggagctaatgtaacagtaattagtacatcacccaacaaag 100  Q
    |||||| |||||||||||||||||||||||||| ||| ||| |||||||| ||||||||||| |||||||| || ||||||||||||||||| |||||||    
T  47601252 ataggtgttgttggtcttggtggacttggtcacatggctgttaagtttgctaaagcttttggggctaatgtgactgtaattagtacatcacctaacaaag 47601153  T
Q  101 agaaagaagcaatagaaaacctaggagctgattcatttcttataagtcatgaccaagataaaatgcaggtacaaataca 179  Q
    | |||||||||| ||||  | |||||||||| |||||| | ||||||| |||||||||||| ||||| ||| |||||||    
T  47601152 aaaaagaagcaagagaatgcttaggagctgactcatttttgataagtcgtgaccaagataagatgcaagtataaataca 47601074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 10 - 110
Target Start/End: Original strand, 28430709 - 28430809
Alignment:
Q  10 gttggtcttggtggacttggtcacttgggtgtgaagtttgcaaaagcttttggagctaatgtaacagtaattagtacatcacccaacaaagagaaagaag 109  Q
    |||||||||||||||||||||||  ||| |||||| ||||| ||||||||||| ||||| |||||||| ||||| || || || |||||| |||| ||||    
T  28430709 gttggtcttggtggacttggtcatatggctgtgaaatttgccaaagcttttggtgctaaggtaacagtgattagcacttctcctaacaaaaagaaggaag 28430808  T
Q  110 c 110  Q
    |    
T  28430809 c 28430809  T

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