View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9084_low_2 (Length: 1138)
Name: NF9084_low_2
Description: NF9084
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9084_low_2 |
 | |
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| [»] scaffold0007 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 891; Significance: 0; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 891; E-Value: 0
Query Start/End: Original strand, 18 - 1127
Target Start/End: Complemental strand, 30415810 - 30414695
Alignment:
| Q |
18 |
atttcatgtgcgttactatgcgtgttcatcagctggccatttaatgtgtgttcccaacaattgtttagggtcaagggtttggcaattagggttgcataa- |
116 |
Q |
| |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||| |
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|
| T |
30415810 |
atttcatgtgcgttactatgtgtgttcatcagctggccatttaatgtgtgttcccaacaattgtttagggtcaagggtttcgtaattagggttgcatgtc |
30415711 |
T |
|
| Q |
117 |
----acgtctactcaataa--ataagaataagaataaagataaagatgatacttcnnnnnnnaagtttagtcgctataccccaatagtatgaaaaagttt |
210 |
Q |
| |
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| | || ||||| |||||||||||||||| |||||||||||||||| | ||||||||| |||||||||||||||||||||||||| |
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|
| T |
30415710 |
tgctaggattaaataataagaataagaataagaataaggataaagatgatactt-tttttttatgtttagtcgttataccccaatagtatgaaaaagttt |
30415612 |
T |
|
| Q |
211 |
ttcataaacgtctactcaaattttactatcaacagtgtgaattaattttgagatgtaatactacaacataacaataccgttaaatatgatttagcagata |
310 |
Q |
| |
|
|||||||| |||||||||||||||| ||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30415611 |
ttcataaatgtctactcaaattttattattaatagtgtgaattaattttgagatgtaatactacaacataacaataccgttaaatatgatttagcagata |
30415512 |
T |
|
| Q |
311 |
taccttttgaaacaggaatcgtgccatgtcagtataatgttatacaaatatgagact--gttatttatccactgagaatttctaattgcatctctattgt |
408 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
30415511 |
taccttttgaaacaggaatcgtgccatgtcaatataatgttatacaaatatgagactatgttatttatccactgagaatttctaattgcatctctattgt |
30415412 |
T |
|
| Q |
409 |
atcactaacattttacagcttagaatcatggacatttcaaataatggtgctcctgtctggtgctcttcccaatccacagttgcaaacttcagtcctttct |
508 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
30415411 |
atcactaacattttacagcttagaatcatggacatttcaaataatggtgctcctgtctggtgctcttcccaatccacagttgcaaacttcagtcctttct |
30415312 |
T |
|
| Q |
509 |
atatggttagtttcttattagtcattattgttctgaggattattcccactatttgttgtagaaactttatgttcttatttctaactcagatacaaccatt |
608 |
Q |
| |
|
|||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
30415311 |
atatggttagtttctttttagtcatt---gttctgaggattattcccactatttgttgtagaaactttatgttcttatttctaactcagatacaaccatt |
30415215 |
T |
|
| Q |
609 |
attgctttgttatctgtggctaaatttactttttcatctacagtgttaatatatccggtatgctttggatggtaccgtttggaattagtgtttctgcaag |
708 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
30415214 |
attgctttattatctgtggctaaatttactttttcatctacagtgttaatatatccggtatgctttggatggtaccgtttggaattagtgtttctgcaag |
30415115 |
T |
|
| Q |
709 |
gttagtagtgcatgctaaactctat-aatttatattgtattagaataaaaaatagacaccaaaataatgtgcatgctatcactaaaattaaaaatggtga |
807 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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|
| T |
30415114 |
gttagtagtgcatgctaaactctattaatttatattgtatcagaataaaaaatagacaccaaaataatgtacatgctatcactaaaattaaaaatggtga |
30415015 |
T |
|
| Q |
808 |
cacatttattttgtttaaatatgtttttagttttcaactaattaggattagggtctgctcgtatgtttgggtctggtggtgtttttgtgttggttcgttt |
907 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||| ||||| |||||||||||||||||||||||||||| | | |
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|
| T |
30415014 |
cacatttattttgtttaattatgtttttagttttcaactaattaggattaaggtctgctcgcatgttcgggtctggtggtgtttttgtgttggttcatgt |
30414915 |
T |
|
| Q |
908 |
agtattgcggtggtgcggaggtgttgttttgggtctgtcgcgtgtggctttttgtgtgttctgatgtgtcttggctgttgtcgcattttgtcttatgtgt |
1007 |
Q |
| |
|
||||||||||||||||||||||||| |||| |||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||| |
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|
| T |
30414914 |
agtattgcggtggtgcggaggtgttattttaggtctgtcgcgtgtggctttgtgtgtgttctaatgtgtcttggctgttgtcgcattttgtcttatgtgt |
30414815 |
T |
|
| Q |
1008 |
agtgcgagtggggcttggtgtatgtctttcaaccggctaagcaatgttcgtttcccggtgttctcctcgtcttgtggttcacgctcgatgttcagaaccg |
1107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
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| T |
30414814 |
agtgcgagtggggcttggtgtatgtctttcaaccggctaagcaatgttcgtttcccggtgttctcctcgtcttgtggttcacgctcgatgttcagaactg |
30414715 |
T |
|
| Q |
1108 |
tgtgggtttggtctgtgctc |
1127 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
30414714 |
tgtgggtttggtctgtgctc |
30414695 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 116; E-Value: 2e-58
Query Start/End: Original strand, 348 - 533
Target Start/End: Complemental strand, 30432108 - 30431924
Alignment:
| Q |
348 |
tgttatacaaatatgagactgttatttatccactgagaatttctaattgcatctctatt-gtatcactaacattttacagcttagaatcatggacatttc |
446 |
Q |
| |
|
||||||||| |||||||||| || ||||||| |||||| |||||| |||||||||||| ||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
30432108 |
tgttatacatatatgagactatt--ttatccattgagaaattctaactgcatctctatttgtatcactaacgttttacagcttagaatcatggacatttg |
30432011 |
T |
|
| Q |
447 |
aaataatggtgctcctgtctggtgctcttcccaatccacagttgcaaacttcagtcctttctatatggttagtttcttattagtcat |
533 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||| ||| | ||||||||||||||||||||||||||||||||||||| ||||||| |
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|
| T |
30432010 |
aaataatggtgctcctttctggtgctcttcccaacccaaaattgcaaacttcagtcctttctatatggttagtttctttctagtcat |
30431924 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 421 - 523
Target Start/End: Complemental strand, 30380687 - 30380585
Alignment:
| Q |
421 |
ttacagcttagaatcatggacatttcaaataatggtgctcctgtctggtgctcttcccaatccacagttgcaaacttcagtcctttctatatggttagtt |
520 |
Q |
| |
|
|||||| |||||||||||||||||| || |||||||||| || ||||||||||||||||||||| | |||||||| ||||| |||||||||||||||||| |
|
|
| T |
30380687 |
ttacagtttagaatcatggacatttgaactaatggtgcttctttctggtgctcttcccaatccaaaattgcaaacatcagtgctttctatatggttagtt |
30380588 |
T |
|
| Q |
521 |
tct |
523 |
Q |
| |
|
||| |
|
|
| T |
30380587 |
tct |
30380585 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 419 - 521
Target Start/End: Complemental strand, 30476824 - 30476722
Alignment:
| Q |
419 |
ttttacagcttagaatcatggacatttcaaataatggtgctcctgtctggtgctcttcccaatccacagttgcaaacttcagtcctttctatatggttag |
518 |
Q |
| |
|
||||||||||||||||| |||| | | |||||||||| ||||| |||||| ||||||| |||||| | |||||||||||||| ||| |||||||||||| |
|
|
| T |
30476824 |
ttttacagcttagaatcttggatgtatgaaataatggttctcctctctggtactcttcctaatccaaaattgcaaacttcagtgcttgctatatggttag |
30476725 |
T |
|
| Q |
519 |
ttt |
521 |
Q |
| |
|
||| |
|
|
| T |
30476724 |
ttt |
30476722 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 45; E-Value: 5e-16
Query Start/End: Original strand, 401 - 501
Target Start/End: Complemental strand, 30372487 - 30372387
Alignment:
| Q |
401 |
tctattgtatcactaacattttacagcttagaatcatggacatttcaaataatggtgctcctgtctggtgctcttcccaatccacagttgcaaacttcag |
500 |
Q |
| |
|
||||||||||||||| ||| | | || ||||||||||||| ||||||| ||||| | ||||| ||||||||||||||||||||| |||||||| |||| |
|
|
| T |
30372487 |
tctattgtatcactaccatgtcatagtttagaatcatggaaatttcaattaatgctcctcctatctggtgctcttcccaatccaatattgcaaacatcag |
30372388 |
T |
|
| Q |
501 |
t |
501 |
Q |
| |
|
| |
|
|
| T |
30372387 |
t |
30372387 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 594 - 733
Target Start/End: Complemental strand, 30431868 - 30431729
Alignment:
| Q |
594 |
tcagatacaaccattattgctttgttatctgtggctaaatttactttttcatctacagtgttaatatatccggtatgctttggatggtaccgtttggaat |
693 |
Q |
| |
|
||||||||||| |||||| |||||||| | || | |||||||| |||||||| |||| ||||| |||| |||||| |||||||| |||| ||||| | |
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|
| T |
30431868 |
tcagatacaacatttattgttttgttatatatgaccaaatttacattttcatcctcagtattaatgtatctggtatgttttggatgataccatttggggt |
30431769 |
T |
|
| Q |
694 |
tagtgtttctgcaaggttagtagtgcatgctaaactctat |
733 |
Q |
| |
|
|||||| ||| ||||||||| |||||||| | |||||| |
|
|
| T |
30431768 |
cagtgttgctggaaggttagtcttgcatgctgagctctat |
30431729 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 419 - 521
Target Start/End: Complemental strand, 30470455 - 30470353
Alignment:
| Q |
419 |
ttttacagcttagaatcatggacatttcaaataatggtgctcctgtctggtgctcttcccaatccacagttgcaaacttcagtcctttctatatggttag |
518 |
Q |
| |
|
|||| ||||||||||||||||| | | |||||||||||||||| || ||| ||||||| |||||| | |||||||| || || |||||| |||||| || |
|
|
| T |
30470455 |
ttttgcagcttagaatcatggatgtatgaaataatggtgctcctatccggtactcttcctaatccaaaattgcaaacatcggtactttctttatggtaag |
30470356 |
T |
|
| Q |
519 |
ttt |
521 |
Q |
| |
|
||| |
|
|
| T |
30470355 |
ttt |
30470353 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0007 (Bit Score: 43; Significance: 0.000000000000007; HSPs: 2)
Name: scaffold0007
Description:
Target: scaffold0007; HSP #1
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 18 - 60
Target Start/End: Original strand, 77743 - 77785
Alignment:
| Q |
18 |
atttcatgtgcgttactatgcgtgttcatcagctggccattta |
60 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
77743 |
atttcatgtgcgttactatgcgtgttcatcagctggccattta |
77785 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0007; HSP #2
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 81 - 114
Target Start/End: Original strand, 77782 - 77815
Alignment:
| Q |
81 |
tttagggtcaagggtttggcaattagggttgcat |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
77782 |
tttagggtcaagggtttggcaattagggttgcat |
77815 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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