View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9084_low_3 (Length: 1079)

Name: NF9084_low_3
Description: NF9084
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9084_low_3
NF9084_low_3
[»] chr2 (2 HSPs)
chr2 (279-660)||(274714-275091)
chr2 (19-286)||(275120-275382)
[»] chr8 (4 HSPs)
chr8 (19-234)||(43617313-43617533)
chr8 (936-1033)||(43618600-43618697)
chr8 (232-288)||(43618453-43618509)
chr8 (279-342)||(43618536-43618599)
[»] chr3 (8 HSPs)
chr3 (693-853)||(5565257-5565417)
chr3 (862-995)||(5565170-5565302)
chr3 (779-895)||(31896518-31896633)
chr3 (897-977)||(14175288-14175364)
chr3 (779-895)||(31945875-31945990)
chr3 (761-806)||(13539573-13539618)
chr3 (779-895)||(31912227-31912342)
chr3 (933-970)||(13539487-13539524)
[»] chr7 (1 HSPs)
chr7 (933-985)||(7854246-7854298)
[»] chr4 (1 HSPs)
chr4 (932-993)||(31952902-31952963)
[»] scaffold0007 (1 HSPs)
scaffold0007 (884-962)||(257658-257735)
[»] scaffold0003 (1 HSPs)
scaffold0003 (779-878)||(42747-42845)
[»] chr6 (1 HSPs)
chr6 (779-878)||(27444516-27444614)


Alignment Details
Target: chr2 (Bit Score: 225; Significance: 1e-123; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 225; E-Value: 1e-123
Query Start/End: Original strand, 279 - 660
Target Start/End: Complemental strand, 275091 - 274714
Alignment:
Q  279 gcatctttaagctctaccagctttgcttccaccttctctttcacagagtcgggtaccttttctcccagctctttcaattgcttctcagtctggtagacaa 378  Q
    ||||||||||||||||||| ||||||||| ||||| |||||||||| | | |||||||||||||| ||||||||||||||||| ||||||||||||||||    
T  275091 gcatctttaagctctaccaactttgcttcaaccttttctttcacagggccaggtaccttttctcctagctctttcaattgcttttcagtctggtagacaa 274992  T
Q  379 cagagtctgcctggttctttgtgtctattgcatccctcttctccttgtcctcctttgaaaatctctcagcctccttgaccaccctctcaacttgtatatc 478  Q
    ||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||| |||| |||    
T  274991 cagagtccgcctgattctttgtgtctattgcatccctcttctccttgtcctcctttgaaaatctctcagcctcattgaccatcctctcaacctgtacatc 274892  T
Q  479 atctgagagataattataaacaccagaaaaacttcccacatcaatgctggagtaacnnnnnnnntccttccgaagtagtaagtaggtaaagattacatac 578  Q
    |||  ||||||||||||||||||| ||| | |||||||||||||||||||||||||        |||| | ||||||| ||| || ||| ||||||| ||    
T  274891 atccaagagataattataaacaccggaacagcttcccacatcaatgctggagtaacaaaaaaaatcctccagaagtagcaagcagataaggattacaaac 274792  T
Q  579 aatttgtagaagtaaatgaatgattagaagatatacctcatcaccaggcaaggtgctggcaccagtaatggtaatatcttgt 660  Q
    ||||| ||     |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  274791 aatttata----caaatgaatgattggaagatatacctcatcaccaggcaaggtgctggcaccagtaatggtaatatcttgt 274714  T

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Target: chr2; HSP #2
Raw Score: 195; E-Value: 1e-105
Query Start/End: Original strand, 19 - 286
Target Start/End: Complemental strand, 275382 - 275120
Alignment:
Q  19 ccattgacaaaaatcactaccaatttagtacgaatcgaagaagcataaaataaaaacaatcctattaaataatctctataactcatttagagtcggtaaa 118  Q
    ||||||||||||||||||||| |||||| |||    ||||||||| | ||||||| |||||||| ||||||||||||||||||||||||||||| |||||    
T  275382 ccattgacaaaaatcactacccatttagcacg----gaagaagcacataataaaa-caatcctactaaataatctctataactcatttagagtcagtaaa 275288  T
Q  119 atcagcatcaatcacatccccatctgctcccttgcctgatgatgattctgaggggccagactcgctaccaggtggtgtaggtcctgctacatctgcatct 218  Q
    |||||||||||||||||| |||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||| |||||||| ||    
T  275287 atcagcatcaatcacatctccatctgctcccttgcctgatgatgagtctgtggggccagactcgctaccaggtggtgtaggtcctgctgcatctgcagct 275188  T
Q  219 ccaggttggttatatagagactgtccaagctgcataacttcctgattgagggcagccatggcatcttt 286  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  275187 ccgggttggttatatagagactgtccaagctgcataacttcctgattgagggcagccatggcatcttt 275120  T

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Target: chr8 (Bit Score: 150; Significance: 1e-78; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 150; E-Value: 1e-78
Query Start/End: Original strand, 19 - 234
Target Start/End: Original strand, 43617313 - 43617533
Alignment:
Q  19 ccattgacaaaaa-tcactaccaatttagtacgaatcgaagaagcataaaataaaaacaatcctattaaataatctctataactcatttagagtcggtaa 117  Q
    ||||||||||||| |||||||||||||||||||    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  43617313 ccattgacaaaaaatcactaccaatttagtacg----gaagtagcataaaataaaaacaatcctattaaataatctctataactcatttagagtcagtaa 43617408  T
Q  118 aatcagcatcaatcacatccccatctgctcccttgcctgatgatga-------ttctgaggggccagactcgct-accaggtggtgtaggtcctgctaca 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||| |||||||||||||||||||||| ||    
T  43617409 aatcagcatcaatcacatccccatctgctcccttgcctgatgatgattctgacttctgaggggccagactcgctaaccaggtggtgtaggtcctgctgca 43617508  T
Q  210 tctgcatctccaggttggttatata 234  Q
    |||||| ||||||||||||||||||    
T  43617509 tctgcagctccaggttggttatata 43617533  T

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Target: chr8; HSP #2
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 936 - 1033
Target Start/End: Original strand, 43618600 - 43618697
Alignment:
Q  936 gtagaggatgaagagatgaagacgatgatgcttttactttagtgggagaaggctaaaaaattaacgaaatgagggaataagaagaagagtttttgtgt 1033  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||  ||||||||| ||||||||||| ||||||||||    
T  43618600 gtagaagatgaagagatgaagacgatgatgcttttactttagtgggagaaggctaaaaaatgaagcaaatgagggcataagaagaagggtttttgtgt 43618697  T

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Target: chr8; HSP #3
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 232 - 288
Target Start/End: Original strand, 43618453 - 43618509
Alignment:
Q  232 atagagactgtccaagctgcataacttcctgattgagggcagccatggcatctttaa 288  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43618453 atagagactgtccaagctgcataacttcctgattgagggcagccatggcatctttaa 43618509  T

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Target: chr8; HSP #4
Raw Score: 48; E-Value: 7e-18
Query Start/End: Original strand, 279 - 342
Target Start/End: Original strand, 43618536 - 43618599
Alignment:
Q  279 gcatctttaagctctaccagctttgcttccaccttctctttcacagagtcgggtaccttttctc 342  Q
    ||||||||||||||| |||||||||||||||||||||||||||||| |  ||||||||||||||    
T  43618536 gcatctttaagctcttccagctttgcttccaccttctctttcacagggctgggtaccttttctc 43618599  T

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Target: chr3 (Bit Score: 93; Significance: 1e-44; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 93; E-Value: 1e-44
Query Start/End: Original strand, 693 - 853
Target Start/End: Complemental strand, 5565417 - 5565257
Alignment:
Q  693 aaacaaagatcataatcaacgaatgattcagtattagaaatgaggaatacgaaaactgaaaataacaattaaccttgcaaaataaaagaagcttctgaca 792  Q
    ||||||||||||  ||||| |||||||||||||||||||||||||||||| ||| | |||||||||||||||||||||||||||||||||||||||||||    
T  5565417 aaacaaagatcaacatcaatgaatgattcagtattagaaatgaggaatacaaaagcagaaaataacaattaaccttgcaaaataaaagaagcttctgaca 5565318  T
Q  793 gcgaccccgacgcgttgaggagcgaattccaacgcggtgatcaacaacggtggttcaactc 853  Q
    | |||  |||| || ||| ||||||||||| |||| ||| ||||| |||||||| ||||||    
T  5565317 gtgacatcgacacggtgaagagcgaattccgacgcagtggtcaacgacggtggtgcaactc 5565257  T

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Target: chr3; HSP #2
Raw Score: 82; E-Value: 4e-38
Query Start/End: Original strand, 862 - 995
Target Start/End: Complemental strand, 5565302 - 5565170
Alignment:
Q  862 tgaagagcaaattccgatgcgatggtcaacgatggtggtgcaactccgacgtggtggaaagcaagtgggtttttgtagaggatgaagagatgaagacgat 961  Q
    |||||||| |||||||| ||  |||||||||| ||||||||||||||| ||||||||||| |||||||||||| |||||||| |||||||| ||||| ||    
T  5565302 tgaagagcgaattccgacgcagtggtcaacgacggtggtgcaactccggcgtggtggaaaacaagtgggtttt-gtagaggacgaagagattaagactat 5565204  T
Q  962 gatgcttttactttagtgggagaaggctaaaaaa 995  Q
    |||||||||||||||||||||||||||| |||||    
T  5565203 gatgcttttactttagtgggagaaggctgaaaaa 5565170  T

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Target: chr3; HSP #3
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 779 - 895
Target Start/End: Original strand, 31896518 - 31896633
Alignment:
Q  779 agaagcttctgacagcgaccccgacgcgttgaggagcgaattccaacgcggtgatcaacaacggtggttcaactctggtgcgatgaagagcaaattccga 878  Q
    |||||||||| |||||||| | |||||| ||| |||||||| || |||||||||| ||||| |||||| |||||| || ||| | ||||||| |||||||    
T  31896518 agaagcttctaacagcgacactgacgcgatgaagagcgaat-ccgacgcggtgattaacaagggtggtgcaactccggcgcggttaagagcatattccga 31896616  T
Q  879 tgcgatggtcaacgatg 895  Q
     ||| ||||||||||||    
T  31896617 cgcggtggtcaacgatg 31896633  T

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Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 897 - 977
Target Start/End: Original strand, 14175288 - 14175364
Alignment:
Q  897 tggtgcaactccgacgtggtggaaagcaagtgggtttttgtagaggatgaagagatgaagacgatgatgcttttactttag 977  Q
    ||||||||||||| ||||||||||||||| |||| |||||||||||| ||||| ||||||||   ||||||||||||||||    
T  14175288 tggtgcaactccggcgtggtggaaagcaaatggg-ttttgtagaggacgaagaaatgaagac---gatgcttttactttag 14175364  T

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Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 779 - 895
Target Start/End: Original strand, 31945875 - 31945990
Alignment:
Q  779 agaagcttctgacagcgaccccgacgcgttgaggagcgaattccaacgcggtgatcaacaacggtggttcaactctggtgcgatgaagagcaaattccga 878  Q
    |||||||||| |||||||| | | |||| ||| |||||||| || |||||||||| ||||| |||||| |||||| || ||| | ||||||| |||||||    
T  31945875 agaagcttctaacagcgacactggcgcgatgaagagcgaat-ccgacgcggtgattaacaagggtggtgcaactccggcgcggttaagagcatattccga 31945973  T
Q  879 tgcgatggtcaacgatg 895  Q
     ||| ||||||||||||    
T  31945974 cgcggtggtcaacgatg 31945990  T

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Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 761 - 806
Target Start/End: Complemental strand, 13539618 - 13539573
Alignment:
Q  761 ttaaccttgcaaaataaaagaagcttctgacagcgaccccgacgcg 806  Q
    |||||||||||||||||||||||||||||||||| | |||||||||    
T  13539618 ttaaccttgcaaaataaaagaagcttctgacagcaaacccgacgcg 13539573  T

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Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 779 - 895
Target Start/End: Original strand, 31912227 - 31912342
Alignment:
Q  779 agaagcttctgacagcgaccccgacgcgttgaggagcgaattccaacgcggtgatcaacaacggtggttcaactctggtgcgatgaagagcaaattccga 878  Q
    |||||||||| |||||||| | | |||| ||| |||||||| || |||||||||| ||||| |||||| |||||| ||  || | ||||||| |||||||    
T  31912227 agaagcttctaacagcgacactggcgcgatgaagagcgaat-ccgacgcggtgattaacaagggtggtgcaactccggcacggttaagagcatattccga 31912325  T
Q  879 tgcgatggtcaacgatg 895  Q
     ||| ||||||||||||    
T  31912326 cgcggtggtcaacgatg 31912342  T

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Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 933 - 970
Target Start/End: Complemental strand, 13539524 - 13539487
Alignment:
Q  933 tttgtagaggatgaagagatgaagacgatgatgctttt 970  Q
    |||| ||||||||||||||||||||| |||||||||||    
T  13539524 tttgcagaggatgaagagatgaagacaatgatgctttt 13539487  T

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Target: chr7 (Bit Score: 49; Significance: 2e-18; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 933 - 985
Target Start/End: Complemental strand, 7854298 - 7854246
Alignment:
Q  933 tttgtagaggatgaagagatgaagacgatgatgcttttactttagtgggagaa 985  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  7854298 tttgcagaggatgaagagatgaagacgatgatgcttttactttagtgggagaa 7854246  T

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Target: chr4 (Bit Score: 38; Significance: 0.000000000007; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 932 - 993
Target Start/End: Original strand, 31952902 - 31952963
Alignment:
Q  932 ttttgtagaggatgaagagatgaagacgatgatgcttttactttagtgggagaaggctaaaa 993  Q
    |||||||||||||||||||||||||| |||||||  |||| ||||||||||| |||| ||||    
T  31952902 ttttgtagaggatgaagagatgaagatgatgatggctttattttagtgggaggaggccaaaa 31952963  T

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Target: scaffold0007 (Bit Score: 35; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 884 - 962
Target Start/End: Complemental strand, 257735 - 257658
Alignment:
Q  884 tggtcaacgatggtggtgcaactccgacgtggtggaaagcaagtgggtttttgtagaggatgaagagatgaagacgatg 962  Q
    ||||||||||  |||||  ||||||| ||||| ||||||||| |||||||| |||||||| ||||| ||||||||||||    
T  257735 tggtcaacgacagtggtttaactccggcgtggaggaaagcaaatgggtttt-gtagaggacgaagaaatgaagacgatg 257658  T

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Target: scaffold0003 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 779 - 878
Target Start/End: Original strand, 42747 - 42845
Alignment:
Q  779 agaagcttctgacagcgaccccgacgcgttgaggagcgaattccaacgcggtgatcaacaacggtggttcaactctggtgcgatgaagagcaaattccga 878  Q
    |||||||||| |||||||| | |  ||| | | |||||||| || |||||||||| ||||||||||||||||||| || ||| | ||||||| |||||||    
T  42747 agaagcttctaacagcgacactggtgcgataaagagcgaat-ccgacgcggtgattaacaacggtggttcaactccggcgcggttaagagcatattccga 42845  T

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Target: chr6 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 779 - 878
Target Start/End: Complemental strand, 27444614 - 27444516
Alignment:
Q  779 agaagcttctgacagcgaccccgacgcgttgaggagcgaattccaacgcggtgatcaacaacggtggttcaactctggtgcgatgaagagcaaattccga 878  Q
    |||||||||| |||||||| | |  ||| | | |||||||| || |||||||||| ||||||||||||||||||| || ||| | ||||||| |||||||    
T  27444614 agaagcttctaacagcgacactggtgcgataaagagcgaat-ccgacgcggtgattaacaacggtggttcaactccggcgcggttaagagcatattccga 27444516  T

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