View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9084_low_4 (Length: 584)
Name: NF9084_low_4
Description: NF9084
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9084_low_4 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 522; Significance: 0; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 522; E-Value: 0
Query Start/End: Original strand, 11 - 565
Target Start/End: Complemental strand, 34442275 - 34441715
Alignment:
| Q |
11 |
acctgtggaagaagagttgagtctttccttcaaagacataatcttggagtgtgagtgactggaagccacacattctagtgcatatcatgcatcgcaagag |
110 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
34442275 |
acctatggaagaagagttgagtctttccttcaaagacataatcttggagtgtgagtgactggaagccacgcattctagtgcatatcatgcatcgcaagag |
34442176 |
T |
|
| Q |
111 |
gtgcttgttgcttccatgaaaacactggcttcagcgtcacacgatccaagatgtgcaaaatatagactatgaagaatccaaatataatatgaagaaatcg |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34442175 |
gtgcttgttgcttccatgaaaacactggcttcagcgtcacacgatccaagatgtgcaaaatatagactatgaagaatccaaatataatatgaagaaatcg |
34442076 |
T |
|
| Q |
211 |
taaaggaggagtcaccatctggaacagttggtggtgtgcagggtttgttaccactaatatatccctccaaatctcttgcaataagaagagagttacattt |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34442075 |
taaaggaggagtcaccatctggaacagttggtggtgtgcagggtttgttaccactaatatatccctccaaatctcttgcaataagaagagagttacattt |
34441976 |
T |
|
| Q |
311 |
cttgtatgatgcaggataatggataaggtcatttcttgaggaagtcatggtatcaatttgcagttaaaagaattagaaggttgataccatgaatataaat |
410 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34441975 |
cttgtatgatgcaggataatggataaagtcatttcttgaggaagtcatggtatcaatttgcaattaaaagaattagaaggttgataccatgaatataaat |
34441876 |
T |
|
| Q |
411 |
gattcagttcattgattacattcaaagtacatcaacatatagattacaaaagtttagataaaatctacggtttgttacagtaaacatattggattaggat |
510 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34441875 |
gattcagttcattgattacattcaaagtacatcaacatatagattacaaaagtttagataaaatctacggtttgttacagtaaacatattggattaggat |
34441776 |
T |
|
| Q |
511 |
ttacaatttgaatt------tgaaaatagattacaataacaaactatgagaatattactcc |
565 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34441775 |
ttacaatttgaatttgaatttgaaaatagattacaataacaaactatgagaatattactcc |
34441715 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 355 - 445
Target Start/End: Complemental strand, 34451716 - 34451625
Alignment:
| Q |
355 |
tcatggtatcaatttgcagttaaaagaattagaaggttgataccatgaatataaatgattcagttcattgattaca-ttcaaagtacatcaa |
445 |
Q |
| |
|
|||||| |||||||||| |||| ||||||||||| ||||| ||||||||||||||||||| ||||||||| | | ||||||||||||||| |
|
|
| T |
34451716 |
tcatgggatcaatttgcgactaaacgaattagaaggctgataacatgaatataaatgattcaattcattgatgaaatttcaaagtacatcaa |
34451625 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 508 - 565
Target Start/End: Complemental strand, 34451613 - 34451556
Alignment:
| Q |
508 |
gatttacaatttgaatttgaaaatagattacaataacaaactatgagaatattactcc |
565 |
Q |
| |
|
||||||||||||||||||||||| ||| || ||||||||||||||||||||||||| |
|
|
| T |
34451613 |
gatttacaatttgaatttgaaaacagagtaaggtaacaaactatgagaatattactcc |
34451556 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 455 - 540
Target Start/End: Original strand, 334513 - 334598
Alignment:
| Q |
455 |
tacaaaagtttagataaaatctacggtttgttacagtaaacatattggattaggatttacaatttgaatttgaaaatagattacaa |
540 |
Q |
| |
|
|||||| ||| ||| || ||||| |||||||||| |||||| || |||||||||||||||||||||||| ||||||| ||||| |
|
|
| T |
334513 |
tacaaaggttgagagaatatctagagtttgttacaacaaacatcttagattaggatttacaatttgaatttagaaatagaatacaa |
334598 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 374 - 423
Target Start/End: Complemental strand, 34468037 - 34467988
Alignment:
| Q |
374 |
ttaaaagaattagaaggttgataccatgaatataaatgattcagttcatt |
423 |
Q |
| |
|
||||| ||||||||||||||||||||| ||| ||||||||||| |||||| |
|
|
| T |
34468037 |
ttaaacgaattagaaggttgataccattaatgtaaatgattcaattcatt |
34467988 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 217 - 305
Target Start/End: Complemental strand, 34468185 - 34468097
Alignment:
| Q |
217 |
aggagtcaccatctggaacagttggtggtgtgcagggtttgttaccactaatatatccctccaaatctcttgcaataagaagagagtta |
305 |
Q |
| |
|
||||| |||||||||||| | |||| | || ||| |||||| |||||||||||||| |||| |||||||||||| |||| ||||||| |
|
|
| T |
34468185 |
aggagccaccatctggaatacttggagatgagcaaagtttgtcaccactaatatatcgttccagatctcttgcaatgagaaaagagtta |
34468097 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 474 - 561
Target Start/End: Original strand, 17881572 - 17881665
Alignment:
| Q |
474 |
tctacggtttgttacagtaaacatattggattaggatttacaatttgaatttgaaaa-------tagattacaataacaaactatgagaatatta |
561 |
Q |
| |
|
||||| |||||||||| ||||| ||||||||||| |||||||||||||||| |||| |||||||||||||||||||||||| |||||| |
|
|
| T |
17881572 |
tctacagtttgttacacgaaacacattggattagg-tttacaatttgaatttaaaaattaaaaatagattacaataacaaactatgaggatatta |
17881665 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 346 - 390
Target Start/End: Original strand, 17881470 - 17881514
Alignment:
| Q |
346 |
ttgaggaagtcatggtatcaatttgcagttaaaagaattagaagg |
390 |
Q |
| |
|
||||||||||||||| |||||||||| ||||| ||||||||||| |
|
|
| T |
17881470 |
ttgaggaagtcatgggatcaatttgctgttaagcgaattagaagg |
17881514 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University