View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9084_low_8 (Length: 346)

Name: NF9084_low_8
Description: NF9084
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9084_low_8
NF9084_low_8
[»] chr5 (27 HSPs)
chr5 (1-333)||(34112588-34112900)
chr5 (24-98)||(12425499-12425573)
chr5 (27-98)||(9202819-9202890)
chr5 (26-96)||(11700092-11700162)
chr5 (24-98)||(39105392-39105466)
chr5 (44-95)||(706394-706445)
chr5 (36-98)||(4014504-4014566)
chr5 (24-98)||(42569048-42569122)
chr5 (54-98)||(42573877-42573921)
chr5 (27-98)||(7674576-7674647)
chr5 (45-96)||(40590457-40590508)
chr5 (36-98)||(5963362-5963424)
chr5 (36-93)||(37112338-37112395)
chr5 (26-98)||(465882-465954)
chr5 (44-96)||(1465107-1465159)
chr5 (54-98)||(5559658-5559702)
chr5 (47-95)||(11054117-11054165)
chr5 (39-95)||(42582843-42582899)
chr5 (25-87)||(14714909-14714970)
chr5 (36-98)||(19460466-19460528)
chr5 (28-98)||(40848685-40848755)
chr5 (44-93)||(32022004-32022053)
chr5 (24-89)||(32172590-32172655)
chr5 (65-98)||(39248028-39248061)
chr5 (27-87)||(9927524-9927584)
chr5 (24-95)||(16945051-16945120)
chr5 (46-98)||(28776903-28776955)
[»] chr1 (31 HSPs)
chr1 (23-98)||(23544707-23544782)
chr1 (26-101)||(15784260-15784336)
chr1 (26-89)||(7028229-7028292)
chr1 (24-97)||(29793711-29793784)
chr1 (32-88)||(50319230-50319286)
chr1 (24-95)||(1432446-1432517)
chr1 (24-98)||(9572176-9572250)
chr1 (32-89)||(48748659-48748715)
chr1 (23-88)||(49888705-49888770)
chr1 (24-87)||(4200168-4200231)
chr1 (67-98)||(5894274-5894305)
chr1 (24-83)||(6074417-6074476)
chr1 (24-95)||(44928224-44928295)
chr1 (29-79)||(10280596-10280646)
chr1 (24-98)||(37841926-37842000)
chr1 (44-86)||(37842443-37842485)
chr1 (32-89)||(1255507-1255564)
chr1 (44-89)||(3887720-3887765)
chr1 (24-98)||(9656574-9656652)
chr1 (57-98)||(15942261-15942302)
chr1 (24-89)||(34619446-34619511)
chr1 (65-98)||(38116294-38116327)
chr1 (24-89)||(38160071-38160135)
chr1 (24-97)||(41163072-41163145)
chr1 (24-85)||(45990126-45990187)
chr1 (26-95)||(46499924-46499993)
chr1 (24-88)||(172646-172709)
chr1 (25-89)||(4549803-4549867)
chr1 (25-89)||(15687142-15687206)
chr1 (24-87)||(38758514-38758578)
chr1 (30-82)||(38867907-38867959)
[»] chr6 (18 HSPs)
chr6 (24-98)||(9093624-9093698)
chr6 (24-89)||(29274297-29274362)
chr6 (35-96)||(9559620-9559681)
chr6 (23-98)||(264299-264374)
chr6 (27-98)||(24476530-24476601)
chr6 (32-88)||(103391-103447)
chr6 (47-94)||(2514634-2514681)
chr6 (30-101)||(4578137-4578208)
chr6 (28-87)||(10749300-10749358)
chr6 (24-82)||(281916-281974)
chr6 (23-89)||(7351675-7351741)
chr6 (26-87)||(20671935-20671996)
chr6 (24-89)||(21959665-21959730)
chr6 (28-84)||(323753-323809)
chr6 (44-88)||(430464-430508)
chr6 (24-80)||(1402942-1402998)
chr6 (1-33)||(4081513-4081545)
chr6 (24-88)||(22742304-22742368)
[»] chr8 (19 HSPs)
chr8 (24-97)||(14280469-14280542)
chr8 (26-98)||(37444485-37444557)
chr8 (24-98)||(16210954-16211028)
chr8 (24-87)||(4558737-4558800)
chr8 (44-98)||(26215424-26215478)
chr8 (24-98)||(10114418-10114491)
chr8 (28-94)||(13652147-13652213)
chr8 (28-94)||(13710790-13710856)
chr8 (24-89)||(1112790-1112855)
chr8 (24-85)||(1470924-1470985)
chr8 (29-98)||(41475133-41475202)
chr8 (45-93)||(1929984-1930032)
chr8 (25-93)||(7514511-7514579)
chr8 (24-76)||(35374441-35374493)
chr8 (24-88)||(42597339-42597403)
chr8 (28-87)||(29056063-29056122)
chr8 (36-98)||(37353329-37353390)
chr8 (57-98)||(27492887-27492928)
chr8 (47-95)||(8060593-8060641)
[»] scaffold0024 (2 HSPs)
scaffold0024 (26-98)||(21348-21420)
scaffold0024 (24-94)||(27508-27578)
[»] chr2 (21 HSPs)
chr2 (24-95)||(18066059-18066130)
chr2 (36-98)||(42457876-42457938)
chr2 (26-97)||(44600468-44600541)
chr2 (24-95)||(25609727-25609798)
chr2 (30-85)||(40837502-40837557)
chr2 (24-98)||(43570344-43570416)
chr2 (24-94)||(2416245-2416315)
chr2 (36-98)||(3611154-3611216)
chr2 (24-94)||(18962106-18962176)
chr2 (36-98)||(42420374-42420436)
chr2 (28-95)||(3673738-3673805)
chr2 (44-98)||(4026745-4026799)
chr2 (24-98)||(9395058-9395132)
chr2 (66-96)||(15288716-15288746)
chr2 (25-95)||(17952770-17952840)
chr2 (60-94)||(40682477-40682511)
chr2 (28-89)||(5133709-5133770)
chr2 (25-94)||(11393724-11393793)
chr2 (25-94)||(11410385-11410454)
chr2 (35-88)||(44119722-44119775)
chr2 (66-98)||(32364834-32364866)
[»] chr3 (32 HSPs)
chr3 (28-98)||(402614-402683)
chr3 (26-98)||(34638034-34638107)
chr3 (36-98)||(30573994-30574054)
chr3 (26-95)||(905040-905109)
chr3 (36-95)||(2128331-2128390)
chr3 (24-87)||(32703077-32703140)
chr3 (26-85)||(42809242-42809301)
chr3 (24-95)||(44061091-44061162)
chr3 (24-86)||(1395611-1395673)
chr3 (21-95)||(41028916-41028990)
chr3 (24-98)||(50952262-50952334)
chr3 (29-81)||(15304420-15304472)
chr3 (24-76)||(33405235-33405287)
chr3 (23-98)||(36783401-36783477)
chr3 (24-92)||(37689452-37689519)
chr3 (28-88)||(52597626-52597686)
chr3 (66-98)||(54194447-54194479)
chr3 (28-83)||(52618946-52619001)
chr3 (24-98)||(25447312-25447386)
chr3 (36-98)||(35127451-35127513)
chr3 (47-97)||(35394792-35394842)
chr3 (24-82)||(49586984-49587042)
chr3 (57-98)||(2304342-2304383)
chr3 (24-89)||(8007763-8007828)
chr3 (28-81)||(10101548-10101601)
chr3 (28-81)||(10212473-10212526)
chr3 (57-98)||(23815981-23816022)
chr3 (36-81)||(30956706-30956751)
chr3 (36-81)||(30972518-30972563)
chr3 (28-101)||(35328236-35328308)
chr3 (66-98)||(20669107-20669139)
chr3 (36-80)||(36631131-36631175)
[»] chr4 (28 HSPs)
chr4 (24-101)||(51630036-51630113)
chr4 (36-96)||(7601689-7601749)
chr4 (21-89)||(25487610-25487678)
chr4 (24-98)||(49004040-49004112)
chr4 (36-86)||(3155543-3155593)
chr4 (24-98)||(26520297-26520371)
chr4 (24-89)||(30338660-30338725)
chr4 (24-88)||(40174503-40174565)
chr4 (24-96)||(6364079-6364151)
chr4 (32-84)||(7731712-7731764)
chr4 (58-98)||(17751224-17751264)
chr4 (24-88)||(30024638-30024702)
chr4 (30-89)||(9680601-9680660)
chr4 (24-95)||(18630611-18630682)
chr4 (24-87)||(44119230-44119293)
chr4 (28-89)||(437504-437566)
chr4 (24-89)||(8422907-8422970)
chr4 (24-98)||(11389454-11389528)
chr4 (28-86)||(49803151-49803209)
chr4 (24-97)||(26883924-26883997)
chr4 (23-88)||(54392886-54392950)
chr4 (26-94)||(7368126-7368194)
chr4 (47-87)||(21193937-21193977)
chr4 (21-89)||(22684581-22684649)
chr4 (24-76)||(23459578-23459630)
chr4 (24-92)||(27043898-27043966)
chr4 (24-88)||(44007940-44008004)
chr4 (66-98)||(53137967-53137999)
[»] chr7 (17 HSPs)
chr7 (26-88)||(27121656-27121718)
chr7 (28-89)||(35536044-35536105)
chr7 (24-77)||(40689054-40689107)
chr7 (24-89)||(45813248-45813313)
chr7 (66-98)||(33552931-33552963)
chr7 (65-101)||(33673003-33673039)
chr7 (24-87)||(48157188-48157251)
chr7 (25-87)||(2012683-2012745)
chr7 (25-87)||(2030648-2030710)
chr7 (25-95)||(22759117-22759187)
chr7 (24-98)||(47177564-47177638)
chr7 (29-82)||(35266843-35266896)
chr7 (24-84)||(43152969-43153030)
chr7 (27-87)||(1417203-1417263)
chr7 (36-96)||(8960707-8960767)
chr7 (57-101)||(19214492-19214536)
chr7 (26-94)||(33894555-33894622)
[»] scaffold0590 (1 HSPs)
scaffold0590 (47-95)||(1165-1213)
[»] scaffold0275 (1 HSPs)
scaffold0275 (47-95)||(2762-2810)


Alignment Details
Target: chr5 (Bit Score: 264; Significance: 1e-147; HSPs: 27)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 1 - 333
Target Start/End: Complemental strand, 34112900 - 34112588
Alignment:
Q  1 tttattttatcttttactatagaatagcttatatgaaaacaacttaactttaattaatcttttactatagaaatagcttatacataagcgcttatcataa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34112900 tttattttatcttttactatagaatagcttatatgaaaacaacttaactttaattaatcttttactatagaaatagcttatacataagcgcttatcataa 34112801  T
Q  101 tgcgcctatcaaataagttgtttatccaaacggggttgtaacaattctttaaagggaaacaacctcaacaagaagttggtaaagacaacaatggcaaaag 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  34112800 tgcgcctatcaaataagttgtttatccaaacggggttgtaacaattctttcaagggaaacaacctcaacaagaagttggtaaagacaacaatggcaaaag 34112701  T
Q  201 ggtacgtgcataacctcttaaataagagttttttgtgaacaaaaaagaaagagaaaattgtttacctgagtatcaatggcaacaagggtgtattgaggaa 300  Q
    ||                    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34112700 gg--------------------taagagttttttgtgaacaaaaaagaaagagaaaattgtttacctgagtatcaatggcaacaagggtgtattgaggaa 34112621  T
Q  301 catcgaggaagagaagggtgacaccgtttttga 333  Q
    |||||||||||||||||||||||||||||||||    
T  34112620 catcgaggaagagaagggtgacaccgtttttga 34112588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 24 - 98
Target Start/End: Complemental strand, 12425573 - 12425499
Alignment:
Q  24 atagcttatatgaaaacaacttaactttaattaatcttttactatagaaatagcttatacataagcgcttatcat 98  Q
    |||||||||| |||||||| ||||||||| || ||||||||||||| |||||| ||||||||||||| |||||||    
T  12425573 atagcttatacgaaaacaatttaactttattttatcttttactatataaatagtttatacataagcgtttatcat 12425499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 27 - 98
Target Start/End: Original strand, 9202819 - 9202890
Alignment:
Q  27 gcttatatgaaaacaacttaactttaattaatcttttactatagaaatagcttatacataagcgcttatcat 98  Q
    |||||||||||||||| ||||||||| || ||||||| ||| |||||||||||||| |||||| ||||||||    
T  9202819 gcttatatgaaaacaatttaactttattttatcttttgctacagaaatagcttatatataagcacttatcat 9202890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 26 - 96
Target Start/End: Complemental strand, 11700162 - 11700092
Alignment:
Q  26 agcttatatgaaaacaacttaactttaattaatcttttactatagaaatagcttatacataagcgcttatc 96  Q
    |||||||| ||||||||| ||||||||||| || ||||  |||||||||||||||||||||||| ||||||    
T  11700162 agcttatacgaaaacaacataactttaatttatttttttatatagaaatagcttatacataagcacttatc 11700092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 24 - 98
Target Start/End: Complemental strand, 39105466 - 39105392
Alignment:
Q  24 atagcttatatgaaaacaacttaactttaattaatcttttactatagaaatagcttatacataagcgcttatcat 98  Q
    |||||||||| |||||||| ||||||| | || || |||  ||||||||||||||||||||||||||||||||||    
T  39105466 atagcttatacgaaaacaatttaacttcatttcatatttagctatagaaatagcttatacataagcgcttatcat 39105392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 44 - 95
Target Start/End: Complemental strand, 706445 - 706394
Alignment:
Q  44 ttaactttaattaatcttttactatagaaatagcttatacataagcgcttat 95  Q
    |||||| || || |||||||||||||||||||||||||||||||||||||||    
T  706445 ttaactatattttatcttttactatagaaatagcttatacataagcgcttat 706394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 36 - 98
Target Start/End: Original strand, 4014504 - 4014566
Alignment:
Q  36 aaaacaacttaactttaattaatcttttactatagaaatagcttatacataagcgcttatcat 98  Q
    |||||||  |||||||| || ||||||| |||||||||||||||||||||| |||||||||||    
T  4014504 aaaacaatctaactttattttatcttttgctatagaaatagcttatacataggcgcttatcat 4014566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 24 - 98
Target Start/End: Original strand, 42569048 - 42569122
Alignment:
Q  24 atagcttatatgaaaacaacttaactttaattaatcttttactatagaaatagcttatacataagcgcttatcat 98  Q
    |||||||||| |||||||| |  |||||| || ||||||| ||||||||||||||| | ||||||||||||||||    
T  42569048 atagcttatacgaaaacaattagactttattttatcttttgctatagaaatagctttttcataagcgcttatcat 42569122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 54 - 98
Target Start/End: Original strand, 42573877 - 42573921
Alignment:
Q  54 ttaatcttttactatagaaatagcttatacataagcgcttatcat 98  Q
    ||||||||||  |||||||||||||||||||||||||||||||||    
T  42573877 ttaatcttttgttatagaaatagcttatacataagcgcttatcat 42573921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 27 - 98
Target Start/End: Complemental strand, 7674647 - 7674576
Alignment:
Q  27 gcttatatgaaaacaacttaactttaattaatcttttactatagaaatagcttatacataagcgcttatcat 98  Q
    ||||||| |||||||| |||| |||| || |||||||  ||||||||||||||||| ||||| |||||||||    
T  7674647 gcttataagaaaacaatttaaatttattttatcttttggtatagaaatagcttatatataagtgcttatcat 7674576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 45 - 96
Target Start/End: Complemental strand, 40590508 - 40590457
Alignment:
Q  45 taactttaattaatcttttactatagaaatagcttatacataagcgcttatc 96  Q
    |||||||| || ||||||| |||||||| |||||||||||||||||||||||    
T  40590508 taactttattttatctttttctatagaagtagcttatacataagcgcttatc 40590457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 36 - 98
Target Start/End: Original strand, 5963362 - 5963424
Alignment:
Q  36 aaaacaacttaactttaattaatcttttactatagaaatagcttatacataagcgcttatcat 98  Q
    ||||||| ||||||||| || |||||| | ||||||||||| || ||||||||||||||||||    
T  5963362 aaaacaatttaactttattttatctttcattatagaaatagtttgtacataagcgcttatcat 5963424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 36 - 93
Target Start/End: Original strand, 37112338 - 37112395
Alignment:
Q  36 aaaacaacttaactttaattaatcttttactatagaaatagcttatacataagcgctt 93  Q
    ||||||| ||||||||  || ||||||| || ||||||||||||||||||||||||||    
T  37112338 aaaacaatttaactttgttttatcttttgctgtagaaatagcttatacataagcgctt 37112395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 26 - 98
Target Start/End: Complemental strand, 465954 - 465882
Alignment:
Q  26 agcttatatgaaaacaacttaactttaattaatcttttactatagaaatagcttatacataagcgcttatcat 98  Q
    ||||||||  ||||||| ||||||||| || |||||||   |||||||||||||||| ||||| |||||||||    
T  465954 agcttatacaaaaacaatttaactttattttatcttttgtcatagaaatagcttatatataagtgcttatcat 465882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 44 - 96
Target Start/End: Original strand, 1465107 - 1465159
Alignment:
Q  44 ttaactttaattaatcttttactatagaaatagcttatacataagcgcttatc 96  Q
    ||||||||| || ||| | | ||||||||||||||||||||||||||||||||    
T  1465107 ttaactttattttatcctatgctatagaaatagcttatacataagcgcttatc 1465159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 54 - 98
Target Start/End: Complemental strand, 5559702 - 5559658
Alignment:
Q  54 ttaatcttttactatagaaatagcttatacataagcgcttatcat 98  Q
    |||||||||||||||||||||| || ||||| |||||||||||||    
T  5559702 ttaatcttttactatagaaataactcatacacaagcgcttatcat 5559658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 47 - 95
Target Start/End: Complemental strand, 11054165 - 11054117
Alignment:
Q  47 actttaattaatcttttactatagaaatagcttatacataagcgcttat 95  Q
    |||||| || |||||||| ||||||||||||||||||||||||| ||||    
T  11054165 actttattttatcttttattatagaaatagcttatacataagcgtttat 11054117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 39 - 95
Target Start/End: Complemental strand, 42582899 - 42582843
Alignment:
Q  39 acaacttaactttaattaatcttttactatagaaatagcttatacataagcgcttat 95  Q
    |||| ||||||||| || ||||||||  || ||||||||||||||||||||||||||    
T  42582899 acaatttaactttatttcatcttttatcatggaaatagcttatacataagcgcttat 42582843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 25 - 87
Target Start/End: Original strand, 14714909 - 14714970
Alignment:
Q  25 tagcttatatgaaaacaacttaactttaattaatcttttactatagaaatagcttatacataa 87  Q
    ||||||||||||||||| |||||||||  || || ||||  ||||||||||||||||||||||    
T  14714909 tagcttatatgaaaacagcttaacttt-gtttatgttttgttatagaaatagcttatacataa 14714970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 36 - 98
Target Start/End: Original strand, 19460466 - 19460528
Alignment:
Q  36 aaaacaacttaactttaattaatcttttactatagaaatagcttatacataagcgcttatcat 98  Q
    ||||||| ||||||||| | ||| ||||  ||||||||||| ||||||||||| |||||||||    
T  19460466 aaaacaatttaactttattcaatgttttgatatagaaatagtttatacataagtgcttatcat 19460528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 28 - 98
Target Start/End: Complemental strand, 40848755 - 40848685
Alignment:
Q  28 cttatatgaaaacaacttaactttaattaatcttttactatagaaatagcttatacataagcgcttatcat 98  Q
    |||||||||||||||  || ||| | || ||||||| || ||||||||| ||||||||||| |||||||||    
T  40848755 cttatatgaaaacaatctatcttcatttcatcttttgctctagaaatagtttatacataagtgcttatcat 40848685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 44 - 93
Target Start/End: Complemental strand, 32022053 - 32022004
Alignment:
Q  44 ttaactttaattaatcttttactatagaaatagcttatacataagcgctt 93  Q
    |||||||||||| ||||||| ||||| || |||||||| |||||||||||    
T  32022053 ttaactttaatttatcttttgctataaaactagcttatgcataagcgctt 32022004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 24 - 89
Target Start/End: Complemental strand, 32172655 - 32172590
Alignment:
Q  24 atagcttatatgaaaacaacttaactttaattaatcttttactatagaaatagcttatacataagc 89  Q
    |||||||||||| ||||||||| |||| | || |||||||  | ||||||||| ||||||||||||    
T  32172655 atagcttatatgtaaacaacttgacttcattttatcttttgttgtagaaatagtttatacataagc 32172590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 65 - 98
Target Start/End: Complemental strand, 39248061 - 39248028
Alignment:
Q  65 ctatagaaatagcttatacataagcgcttatcat 98  Q
    ||||||||||||||| ||||||||||||||||||    
T  39248061 ctatagaaatagcttttacataagcgcttatcat 39248028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 27 - 87
Target Start/End: Complemental strand, 9927584 - 9927524
Alignment:
Q  27 gcttatatgaaaacaacttaactttaattaatcttttactatagaaatagcttatacataa 87  Q
    |||||||||||||||| || || | | || ||||||||||||| ||||| |||||||||||    
T  9927584 gcttatatgaaaacaatttgacgtaattttatcttttactatacaaataacttatacataa 9927524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 24 - 95
Target Start/End: Original strand, 16945051 - 16945120
Alignment:
Q  24 atagcttatatgaaaacaacttaactttaattaatcttttactatagaaatagcttatacataagcgcttat 95  Q
    ||||||| ||||||||||| |||||| |  || |||||||  | |||||||||||||||||||||| |||||    
T  16945051 atagcttctatgaaaacaatttaactat--tttatcttttcttgtagaaatagcttatacataagcacttat 16945120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 46 - 98
Target Start/End: Complemental strand, 28776955 - 28776903
Alignment:
Q  46 aactttaattaatcttttactatagaaatagcttatacataagcgcttatcat 98  Q
    ||||||| || ||||||| | ||| ||||||||||||||||||| ||||||||    
T  28776955 aactttattttatctttttcaataaaaatagcttatacataagcacttatcat 28776903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 48; Significance: 2e-18; HSPs: 31)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 23 - 98
Target Start/End: Original strand, 23544707 - 23544782
Alignment:
Q  23 aatagcttatatgaaaacaacttaactttaattaatcttttactatagaaatagcttatacataagcgcttatcat 98  Q
    |||||||||||||||||||| || |||| | || ||||||| | ||||||||||||||||||||||||||||||||    
T  23544707 aatagcttatatgaaaacaatttgacttaattttatctttttccatagaaatagcttatacataagcgcttatcat 23544782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 26 - 101
Target Start/End: Complemental strand, 15784336 - 15784260
Alignment:
Q  26 agcttatatgaaaacaacttaactttaattaatctttt-actatagaaatagcttatacataagcgcttatcataat 101  Q
    |||||||| |||||||| ||||||||| || | ||||| ||| ||||||||||||||||||||||||||||||||||    
T  15784336 agcttatacgaaaacaatttaactttattttacctttttactttagaaatagcttatacataagcgcttatcataat 15784260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 26 - 89
Target Start/End: Complemental strand, 7028292 - 7028229
Alignment:
Q  26 agcttatatgaaaacaacttaactttaattaatcttttactatagaaatagcttatacataagc 89  Q
    ||||||||  ||||||||||||||||| || ||||||| |||||||||||| ||||||||||||    
T  7028292 agcttatacaaaaacaacttaactttattttatcttttgctatagaaatagtttatacataagc 7028229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 24 - 97
Target Start/End: Complemental strand, 29793784 - 29793711
Alignment:
Q  24 atagcttatatgaaaacaacttaactttaattaatcttttactatagaaatagcttatacataagcgcttatca 97  Q
    |||||||||| ||||||||||||||||||  | |||||||  | |||||||||||| ||||||||| |||||||    
T  29793784 atagcttatacgaaaacaacttaactttatgttatcttttgttgtagaaatagcttgtacataagcacttatca 29793711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 32 - 88
Target Start/End: Complemental strand, 50319286 - 50319230
Alignment:
Q  32 tatgaaaacaacttaactttaattaatcttttactatagaaatagcttatacataag 88  Q
    |||||||||||||| |||||| || |||||||  |||||||||||||||||||||||    
T  50319286 tatgaaaacaacttgactttattttatcttttgttatagaaatagcttatacataag 50319230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 24 - 95
Target Start/End: Complemental strand, 1432517 - 1432446
Alignment:
Q  24 atagcttatatgaaaacaacttaactttaattaatcttttactatagaaatagcttatacataagcgcttat 95  Q
    ||||||||||  ||||||| | |||| || || |||||||||||||||||||||||||||||| | ||||||    
T  1432517 atagcttataaaaaaacaattgaactctattttatcttttactatagaaatagcttatacatatgtgcttat 1432446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 24 - 98
Target Start/End: Original strand, 9572176 - 9572250
Alignment:
Q  24 atagcttatatgaaaacaacttaactttaattaatcttttactatagaaatagcttatacataagcgcttatcat 98  Q
    ||||||||||  ||| ||| ||||||||| || ||||||| |||||||||||||| |||||| |||||| |||||    
T  9572176 atagcttatacaaaagcaatttaactttattttatcttttgctatagaaatagctaatacattagcgctgatcat 9572250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 32 - 89
Target Start/End: Original strand, 48748659 - 48748715
Alignment:
Q  32 tatgaaaacaacttaactttaattaatcttttactatagaaatagcttatacataagc 89  Q
    ||||||||||| ||||||||| || |||||||  ||||||||||||||||||||||||    
T  48748659 tatgaaaacaatttaactttatttcatcttttg-tatagaaatagcttatacataagc 48748715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 23 - 88
Target Start/End: Complemental strand, 49888770 - 49888705
Alignment:
Q  23 aatagcttatatgaaaacaacttaactttaattaatcttttactatagaaatagcttatacataag 88  Q
    ||||||||||| |||||||| | ||||||| || ||||||| | | ||||||||||||||||||||    
T  49888770 aatagcttatacgaaaacaattaaactttattttatctttttccaaagaaatagcttatacataag 49888705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 24 - 87
Target Start/End: Complemental strand, 4200231 - 4200168
Alignment:
Q  24 atagcttatatgaaaacaacttaactttaattaatcttttactatagaaatagcttatacataa 87  Q
    |||||||||||||||||||||| |||||| || |||||||  |||| ||||| |||||| ||||    
T  4200231 atagcttatatgaaaacaacttgactttattttatcttttgttataaaaataacttatatataa 4200168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 67 - 98
Target Start/End: Original strand, 5894274 - 5894305
Alignment:
Q  67 atagaaatagcttatacataagcgcttatcat 98  Q
    ||||||||||||||||||||||||||||||||    
T  5894274 atagaaatagcttatacataagcgcttatcat 5894305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 24 - 83
Target Start/End: Complemental strand, 6074476 - 6074417
Alignment:
Q  24 atagcttatatgaaaacaacttaactttaattaatcttttactatagaaatagcttatac 83  Q
    ||||||||||||||||||  |||||||||  | |||||||  ||||||||||||||||||    
T  6074476 atagcttatatgaaaacagtttaactttatatcatcttttgttatagaaatagcttatac 6074417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 24 - 95
Target Start/End: Original strand, 44928224 - 44928295
Alignment:
Q  24 atagcttatatgaaaacaacttaactttaattaatcttttactatagaaatagcttatacataagcgcttat 95  Q
    |||||||||||||||||| ||| ||||||  | ||||||| | |  |||||||||||||||||||| |||||    
T  44928224 atagcttatatgaaaacagcttgactttatcttatcttttgcaactgaaatagcttatacataagcacttat 44928295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 29 - 79
Target Start/End: Complemental strand, 10280646 - 10280596
Alignment:
Q  29 ttatatgaaaacaacttaactttaattaatcttttactatagaaatagctt 79  Q
    ||||||| |||||||||||||||| || |||||||  ||||||||||||||    
T  10280646 ttatatggaaacaacttaactttactttatcttttgttatagaaatagctt 10280596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 24 - 98
Target Start/End: Complemental strand, 37842000 - 37841926
Alignment:
Q  24 atagcttatatgaaaacaacttaactttaattaatcttttactatagaaatagcttatacataagcgcttatcat 98  Q
    |||||||||| |||||||| ||||||||| || ||| |||  ||||| |||||||||||||| ||  ||||||||    
T  37842000 atagcttatacgaaaacaatttaactttattttatcatttgttataggaatagcttatacatgagtacttatcat 37841926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 44 - 86
Target Start/End: Original strand, 37842443 - 37842485
Alignment:
Q  44 ttaactttaattaatcttttactatagaaatagcttatacata 86  Q
    ||||||||| || ||||||| ||||||||||||||||||||||    
T  37842443 ttaactttatttcatcttttgctatagaaatagcttatacata 37842485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 32 - 89
Target Start/End: Original strand, 1255507 - 1255564
Alignment:
Q  32 tatgaaaacaacttaactttaattaatcttttactatagaaatagcttatacataagc 89  Q
    |||||||| || || |||| | || ||||||||||||||||||||||| |||||||||    
T  1255507 tatgaaaagaatttgacttcatttcatcttttactatagaaatagcttctacataagc 1255564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 44 - 89
Target Start/End: Original strand, 3887720 - 3887765
Alignment:
Q  44 ttaactttaattaatcttttactatagaaatagcttatacataagc 89  Q
    ||||||||| || ||||||| |||| ||||||||||||||||||||    
T  3887720 ttaactttattttatcttttgctattgaaatagcttatacataagc 3887765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 24 - 98
Target Start/End: Complemental strand, 9656652 - 9656574
Alignment:
Q  24 atagcttatatgaaaacaacttaactttaattaatcttttactataga----aatagcttatacataagcgcttatcat 98  Q
    |||||||||||||||| || ||||||||| || || |||| |||||||    ||||||||||||||| | |||||||||    
T  9656652 atagcttatatgaaaataatttaactttattttattttttgctatagaaataaatagcttatacataggtgcttatcat 9656574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 57 - 98
Target Start/End: Complemental strand, 15942302 - 15942261
Alignment:
Q  57 atcttttactatagaaatagcttatacataagcgcttatcat 98  Q
    ||||||| ||||| ||||||||||||||||||| ||||||||    
T  15942302 atctttttctatataaatagcttatacataagcacttatcat 15942261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 24 - 89
Target Start/End: Original strand, 34619446 - 34619511
Alignment:
Q  24 atagcttatatgaaaacaacttaactttaattaatcttttactatagaaatagcttatacataagc 89  Q
    ||||||||||  ||||||| ||||| ||| || |||||||  ||||||||| ||||||||||||||    
T  34619446 atagcttatacaaaaacaatttaaccttattttatcttttgttatagaaatggcttatacataagc 34619511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 65 - 98
Target Start/End: Original strand, 38116294 - 38116327
Alignment:
Q  65 ctatagaaatagcttatacataagcgcttatcat 98  Q
    |||| |||||||||||||||||||||||||||||    
T  38116294 ctattgaaatagcttatacataagcgcttatcat 38116327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 24 - 89
Target Start/End: Original strand, 38160071 - 38160135
Alignment:
Q  24 atagcttatatgaaaacaacttaactttaattaatcttttactatagaaatagcttatacataagc 89  Q
    |||||||||| |||||||| | ||||||| || ||||||| || ||||||| ||||||||||||||    
T  38160071 atagcttatacgaaaacaattgaactttagtttatctttt-ctctagaaatggcttatacataagc 38160135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 24 - 97
Target Start/End: Original strand, 41163072 - 41163145
Alignment:
Q  24 atagcttatatgaaaacaacttaactttaattaatcttttactatagaaatagcttatacataagcgcttatca 97  Q
    |||||||||| |||| ||| ||||||| | || ||||||| | ||| ||||| || ||||||||||||||||||    
T  41163072 atagcttatacgaaagcaatttaacttcattttatcttttgcaataaaaataactcatacataagcgcttatca 41163145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 24 - 85
Target Start/End: Original strand, 45990126 - 45990187
Alignment:
Q  24 atagcttatatgaaaacaacttaactttaattaatcttttactatagaaatagcttatacat 85  Q
    ||||||||||||||||||| || |||||| || |||||||  |||| ||||||| |||||||    
T  45990126 atagcttatatgaaaacaattttactttattttatcttttgatataaaaatagcatatacat 45990187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 26 - 95
Target Start/End: Original strand, 46499924 - 46499993
Alignment:
Q  26 agcttatatgaaaacaacttaactttaattaatcttttactatagaaatagcttatacataagcgcttat 95  Q
    |||||| || ||||||| || |||||| || |||||||  ||||||||||||||||| |||||| |||||    
T  46499924 agcttaaataaaaacaatttgactttattttatcttttcttatagaaatagcttatagataagcacttat 46499993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 24 - 88
Target Start/End: Original strand, 172646 - 172709
Alignment:
Q  24 atagcttatatgaaaacaacttaactttaattaatcttttactatagaaatagcttatacataag 88  Q
    ||||| |||| ||||| ||||||||||||  | |||||||  |||||||||||||||||||||||    
T  172646 atagcctataagaaaa-aacttaactttatgttatcttttgttatagaaatagcttatacataag 172709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 25 - 89
Target Start/End: Complemental strand, 4549867 - 4549803
Alignment:
Q  25 tagcttatatgaaaacaacttaactttaattaatcttttactatagaaatagcttatacataagc 89  Q
    |||||| | |||| |||| ||||||||| || |||||||  |||||||||||||| |||||||||    
T  4549867 tagcttgtttgaagacaatttaactttattttatcttttgttatagaaatagcttgtacataagc 4549803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 25 - 89
Target Start/End: Original strand, 15687142 - 15687206
Alignment:
Q  25 tagcttatatgaaaacaacttaactttaattaatcttttactatagaaatagcttatacataagc 89  Q
    ||||||||| |||||||| ||||||||| || || ||||  |||||||||||||| ||| |||||    
T  15687142 tagcttatacgaaaacaatttaactttattttatattttgttatagaaatagcttgtacttaagc 15687206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 24 - 87
Target Start/End: Original strand, 38758514 - 38758578
Alignment:
Q  24 atagcttatatgaaaacaacttaactttaattaatcttttacta-tagaaatagcttatacataa 87  Q
    |||| ||||||||||||||||| | |||| || |||||||| || |||||| |||||||||||||    
T  38758514 atagtttatatgaaaacaacttgattttatttcatcttttattattagaaacagcttatacataa 38758578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 30 - 82
Target Start/End: Original strand, 38867907 - 38867959
Alignment:
Q  30 tatatgaaaacaacttaactttaattaatcttttactatagaaatagcttata 82  Q
    ||||||||||||  || |||||| ||||||||||  |||||||||||||||||    
T  38867907 tatatgaaaacattttgactttatttaatcttttggtatagaaatagcttata 38867959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 47; Significance: 9e-18; HSPs: 18)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 24 - 98
Target Start/End: Original strand, 9093624 - 9093698
Alignment:
Q  24 atagcttatatgaaaacaacttaactttaattaatcttttactatagaaatagcttatacataagcgcttatcat 98  Q
    |||||||||| |||||||| ||||||||| || |||||||  |||||||||||||||| ||||||||||||||||    
T  9093624 atagcttatacgaaaacaatttaactttattttatcttttgatatagaaatagcttatccataagcgcttatcat 9093698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 24 - 89
Target Start/End: Original strand, 29274297 - 29274362
Alignment:
Q  24 atagcttatatgaaaacaacttaactttaattaatcttttactatagaaatagcttatacataagc 89  Q
    ||||||||||||||||||| || |||||| || ||||||| |||||||||||||||||||||||||    
T  29274297 atagcttatatgaaaacaatttgactttattttatcttttgctatagaaatagcttatacataagc 29274362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 35 - 96
Target Start/End: Original strand, 9559620 - 9559681
Alignment:
Q  35 gaaaacaacttaactttaattaatcttttactatagaaatagcttatacataagcgcttatc 96  Q
    |||||||| |||| |||| || ||||||| ||||||||||| ||||||||||||||||||||    
T  9559620 gaaaacaatttaaatttattttatcttttgctatagaaataacttatacataagcgcttatc 9559681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 23 - 98
Target Start/End: Complemental strand, 264374 - 264299
Alignment:
Q  23 aatagcttatatgaaaacaacttaactttaattaatcttttactatagaaatagcttatacataagcgcttatcat 98  Q
    ||||||||| | |||||| | ||||||||| || ||||||| || ||||||||||||||| |||||| ||||||||    
T  264374 aatagcttagacgaaaacgatttaactttattttatcttttgctttagaaatagcttatatataagcacttatcat 264299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 27 - 98
Target Start/End: Complemental strand, 24476601 - 24476530
Alignment:
Q  27 gcttatatgaaaacaacttaactttaattaatcttttactatagaaatagcttatacataagcgcttatcat 98  Q
    ||||||||||||| || ||||||  | || ||||||| |||||||||||||||||||||||| | |||||||    
T  24476601 gcttatatgaaaataatttaactacattttatcttttgctatagaaatagcttatacataagtgtttatcat 24476530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 32 - 88
Target Start/End: Complemental strand, 103447 - 103391
Alignment:
Q  32 tatgaaaacaacttaactttaattaatcttttactatagaaatagcttatacataag 88  Q
    ||||||||||||||||||| |  | ||||||| ||||||||||||||||||| ||||    
T  103447 tatgaaaacaacttaacttcatattatcttttgctatagaaatagcttatacgtaag 103391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 47 - 94
Target Start/End: Complemental strand, 2514681 - 2514634
Alignment:
Q  47 actttaattaatcttttactatagaaatagcttatacataagcgctta 94  Q
    |||||| || |||||||| |||||||||||||||||||||||| ||||    
T  2514681 actttattttatcttttattatagaaatagcttatacataagcactta 2514634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 30 - 101
Target Start/End: Original strand, 4578137 - 4578208
Alignment:
Q  30 tatatgaaaacaacttaactttaattaatcttttactatagaaatagcttatacataagcgcttatcataat 101  Q
    ||||||||||||| ||||| | |||| ||||||| || ||||||||| |||| |||||| ||| ||||||||    
T  4578137 tatatgaaaacaatttaacataaatttatcttttgctgtagaaatagtttatgcataagtgctcatcataat 4578208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 28 - 87
Target Start/End: Original strand, 10749300 - 10749358
Alignment:
Q  28 cttatatgaaaacaacttaactttaattaatcttttactatagaaatagcttatacataa 87  Q
    |||||||||||| || ||||||||| || |||||||| |||||||||| |||||||||||    
T  10749300 cttatatgaaaataatttaactttattttatcttttattatagaaata-cttatacataa 10749358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 24 - 82
Target Start/End: Original strand, 281916 - 281974
Alignment:
Q  24 atagcttatatgaaaacaacttaactttaattaatcttttactatagaaatagcttata 82  Q
    ||||||||||||||||||| || |||||| || |||||||  ||||| |||||||||||    
T  281916 atagcttatatgaaaacaagttgactttattttatcttttgttataggaatagcttata 281974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 23 - 89
Target Start/End: Original strand, 7351675 - 7351741
Alignment:
Q  23 aatagcttatatgaaaacaacttaactttaattaatcttttactatagaaatagcttatacataagc 89  Q
    |||||||||||||||||||  ||||||||| || ||  |||| |||| |||||| ||||||||||||    
T  7351675 aatagcttatatgaaaacagtttaactttattttatagtttattatataaatagtttatacataagc 7351741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 26 - 87
Target Start/End: Original strand, 20671935 - 20671996
Alignment:
Q  26 agcttatatgaaaacaacttaactttaattaatcttttactatagaaatagcttatacataa 87  Q
    |||||||| |||||||| || |||||| || |||||||  | ||||||||||||||||||||    
T  20671935 agcttatacgaaaacaatttgactttattttatcttttgatctagaaatagcttatacataa 20671996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 24 - 89
Target Start/End: Complemental strand, 21959730 - 21959665
Alignment:
Q  24 atagcttatatgaaaacaacttaactttaattaatcttttactatagaaatagcttatacataagc 89  Q
    |||||||||||| |||||| || |||||| || |||||||  ||| |||||||||||||| |||||    
T  21959730 atagcttatatgcaaacaaattgactttattttatcttttgttatggaaatagcttatacttaagc 21959665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 28 - 84
Target Start/End: Complemental strand, 323809 - 323753
Alignment:
Q  28 cttatatgaaaacaacttaactttaattaatcttttactatagaaatagcttataca 84  Q
    ||||||||||||||  || | |||| || |||||||| |||||||||||||||||||    
T  323809 cttatatgaaaacagtttgaatttattttatcttttaatatagaaatagcttataca 323753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 44 - 88
Target Start/End: Original strand, 430464 - 430508
Alignment:
Q  44 ttaactttaattaatcttttactatagaaatagcttatacataag 88  Q
    ||||||||| || |||||||  |||||||||||||||||||||||    
T  430464 ttaactttatttcatctttttatatagaaatagcttatacataag 430508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 24 - 80
Target Start/End: Complemental strand, 1402998 - 1402942
Alignment:
Q  24 atagcttatatgaaaacaacttaactttaattaatcttttactatagaaatagctta 80  Q
    |||||||||||||||| |  ||||||||| || |||||||  |||||||||||||||    
T  1402998 atagcttatatgaaaatagtttaactttattttatcttttgttatagaaatagctta 1402942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 4081513 - 4081545
Alignment:
Q  1 tttattttatcttttactatagaatagcttata 33  Q
    |||||||||||||||| ||||||||||||||||    
T  4081513 tttattttatcttttattatagaatagcttata 4081545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 24 - 88
Target Start/End: Complemental strand, 22742368 - 22742304
Alignment:
Q  24 atagcttatatgaaaacaacttaactttaattaatcttttactatagaaatagcttatacataag 88  Q
    ||||||||||||||||||| || |||||| || ||| |||  |||| |||||||||||| |||||    
T  22742368 atagcttatatgaaaacaatttgactttattttatcctttgttatacaaatagcttatagataag 22742304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 46; Significance: 3e-17; HSPs: 19)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 24 - 97
Target Start/End: Original strand, 14280469 - 14280542
Alignment:
Q  24 atagcttatatgaaaacaacttaactttaattaatcttttactatagaaatagcttatacataagcgcttatca 97  Q
    ||||||||||||||||||| |||| || | || ||||||| |||||||||||| ||||||||||||||||||||    
T  14280469 atagcttatatgaaaacaatttaatttaattttatcttttgctatagaaataggttatacataagcgcttatca 14280542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 26 - 98
Target Start/End: Original strand, 37444485 - 37444557
Alignment:
Q  26 agcttatatgaaaacaacttaactttaattaatcttttactatagaaatagcttatacataagcgcttatcat 98  Q
    |||||||| |||||||| ||||||||| || |||||||  ||||| |||||||||||||||||||||||||||    
T  37444485 agcttatacgaaaacaatttaactttactttatcttttgttatagtaatagcttatacataagcgcttatcat 37444557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 24 - 98
Target Start/End: Original strand, 16210954 - 16211028
Alignment:
Q  24 atagcttatatgaaaacaacttaactttaattaatcttttactatagaaatagcttatacataagcgcttatcat 98  Q
    |||||||||||||||||||  |||||||| || ||| ||||||||||||||||||||||||| || || ||||||    
T  16210954 atagcttatatgaaaacaatgtaactttattttatcatttactatagaaatagcttatacatgagtgcgtatcat 16211028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 24 - 87
Target Start/End: Complemental strand, 4558800 - 4558737
Alignment:
Q  24 atagcttatatgaaaacaacttaactttaattaatcttttactatagaaatagcttatacataa 87  Q
    ||||| |||||||||| || ||||||||| || |||||||| ||||||||||||||||||||||    
T  4558800 atagcatatatgaaaataatttaactttattttatcttttattatagaaatagcttatacataa 4558737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 44 - 98
Target Start/End: Complemental strand, 26215478 - 26215424
Alignment:
Q  44 ttaactttaattaatcttttactatagaaatagcttatacataagcgcttatcat 98  Q
    ||||||||| || |||||||  |||||||||||||||||||||||||||||||||    
T  26215478 ttaactttattttatcttttgttatagaaatagcttatacataagcgcttatcat 26215424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 24 - 98
Target Start/End: Complemental strand, 10114491 - 10114418
Alignment:
Q  24 atagcttatatgaaaacaacttaactttaattaatcttttactatagaaatagcttatacataagcgcttatcat 98  Q
    ||||||||||  ||||||| | ||||| | || ||||||| ||||||||||||||||||||||||| ||||||||    
T  10114491 atagcttataccaaaacaattcaactt-attttatcttttgctatagaaatagcttatacataagcacttatcat 10114418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 28 - 94
Target Start/End: Complemental strand, 13652213 - 13652147
Alignment:
Q  28 cttatatgaaaacaacttaactttaattaatcttttactatagaaatagcttatacataagcgctta 94  Q
    ||||||||||||||| || |||| | |  ||||||| ||||||||||||||||||||||||| ||||    
T  13652213 cttatatgaaaacaatttcacttcattccatcttttgctatagaaatagcttatacataagcactta 13652147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 28 - 94
Target Start/End: Complemental strand, 13710856 - 13710790
Alignment:
Q  28 cttatatgaaaacaacttaactttaattaatcttttactatagaaatagcttatacataagcgctta 94  Q
    ||||||||||||||| || |||| | |  ||||||| ||||||||||||||||||||||||| ||||    
T  13710856 cttatatgaaaacaatttcacttcattccatcttttgctatagaaatagcttatacataagcactta 13710790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 24 - 89
Target Start/End: Complemental strand, 1112855 - 1112790
Alignment:
Q  24 atagcttatatgaaaacaacttaactttaattaatcttttactatagaaatagcttatacataagc 89  Q
    ||||||||| ||||||||| ||||| ||| || |||||||  |||||||||||| |||||||||||    
T  1112855 atagcttatgtgaaaacaatttaaccttattttatcttttgttatagaaatagcatatacataagc 1112790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 24 - 85
Target Start/End: Original strand, 1470924 - 1470985
Alignment:
Q  24 atagcttatatgaaaacaacttaactttaattaatcttttactatagaaatagcttatacat 85  Q
    |||||||||||||||  || || |||||| || |||||||| ||||||||||||||||||||    
T  1470924 atagcttatatgaaagtaatttgactttattttatcttttattatagaaatagcttatacat 1470985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 29 - 98
Target Start/End: Original strand, 41475133 - 41475202
Alignment:
Q  29 ttatatgaaaacaacttaactttaattaatcttttactatagaaatagcttatacataagcgcttatcat 98  Q
    ||||| |||||||| |||||| || || ||||||| ||||| || ||||||||||||||| |||||||||    
T  41475133 ttatacgaaaacaatttaactgtattttatcttttgctataaaattagcttatacataagtgcttatcat 41475202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 45 - 93
Target Start/End: Complemental strand, 1930032 - 1929984
Alignment:
Q  45 taactttaattaatcttttactatagaaatagcttatacataagcgctt 93  Q
    |||||||| || ||||||| ||||||||||| |||||||||||||||||    
T  1930032 taactttattttatctttttctatagaaataacttatacataagcgctt 1929984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 25 - 93
Target Start/End: Complemental strand, 7514579 - 7514511
Alignment:
Q  25 tagcttatatgaaaacaacttaactttaattaatcttttactatagaaatagcttatacataagcgctt 93  Q
    |||||||||||||||||| | ||| ||| || |  |||| |||||||||||||||||||||||| ||||    
T  7514579 tagcttatatgaaaacaattgaacattattttagtttttgctatagaaatagcttatacataagggctt 7514511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 24 - 76
Target Start/End: Original strand, 35374441 - 35374493
Alignment:
Q  24 atagcttatatgaaaacaacttaactttaattaatcttttactatagaaatag 76  Q
    ||||||||||||||||||| ||||||||| || ||||||  ||||||||||||    
T  35374441 atagcttatatgaaaacaatttaactttattttatctttcgctatagaaatag 35374493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 24 - 88
Target Start/End: Complemental strand, 42597403 - 42597339
Alignment:
Q  24 atagcttatatgaaaacaacttaactttaattaatcttttactatagaaatagcttatacataag 88  Q
    |||||||  |||||||||| || |||||| || |||||||  |||||||||||||||||||||||    
T  42597403 atagcttgcatgaaaacaattttactttattttatcttttgttatagaaatagcttatacataag 42597339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 28 - 87
Target Start/End: Original strand, 29056063 - 29056122
Alignment:
Q  28 cttatatgaaaacaacttaactttaattaatcttttactatagaaatagcttatacataa 87  Q
    ||||||||||||||| || |||||| || ||||||| || ||||| ||||||||||||||    
T  29056063 cttatatgaaaacaaattgactttattttatcttttgctctagaagtagcttatacataa 29056122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 36 - 98
Target Start/End: Original strand, 37353329 - 37353390
Alignment:
Q  36 aaaacaacttaactttaattaatcttttactatagaaatagcttatacataagcgcttatcat 98  Q
    ||||||| ||||||||| ||| ||||||  ||||||||||| || ||||||||||||||||||    
T  37353329 aaaacaatttaactttattta-tcttttgttatagaaatagtttgtacataagcgcttatcat 37353390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 57 - 98
Target Start/End: Complemental strand, 27492928 - 27492887
Alignment:
Q  57 atcttttactatagaaatagcttatacataagcgcttatcat 98  Q
    ||||||| ||||||||||| |||||||||||| |||||||||    
T  27492928 atcttttgctatagaaataccttatacataagtgcttatcat 27492887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 47 - 95
Target Start/End: Complemental strand, 8060641 - 8060593
Alignment:
Q  47 actttaattaatcttttactatagaaatagcttatacataagcgcttat 95  Q
    ||||||||||||  |||| ||||||||||||||||| |||||| |||||    
T  8060641 actttaattaatgctttagtatagaaatagcttatatataagcacttat 8060593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 26 - 98
Target Start/End: Original strand, 21348 - 21420
Alignment:
Q  26 agcttatatgaaaacaacttaactttaattaatcttttactatagaaatagcttatacataagcgcttatcat 98  Q
    |||||||| |||||||| ||||||||| || ||||||| ||||| |||||||||||||||||| |||||||||    
T  21348 agcttatacgaaaacaatttaactttattttatcttttcctataaaaatagcttatacataagtgcttatcat 21420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 24 - 94
Target Start/End: Complemental strand, 27578 - 27508
Alignment:
Q  24 atagcttatatgaaaacaacttaactttaattaatcttttactatagaaatagcttatacataagcgctta 94  Q
    |||| |||||||||||||| || |||||| || ||||| |  |||||||||| ||||||||||||| ||||    
T  27578 atagtttatatgaaaacaatttgactttattttatcttctgttatagaaataacttatacataagcactta 27508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 44; Significance: 5e-16; HSPs: 21)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 24 - 95
Target Start/End: Complemental strand, 18066130 - 18066059
Alignment:
Q  24 atagcttatatgaaaacaacttaactttaattaatcttttactatagaaatagcttatacataagcgcttat 95  Q
    ||||||||||||||||||| ||||||||| || || ||||||| |||||||||||| ||||| |||||||||    
T  18066130 atagcttatatgaaaacaatttaactttatttcatattttactgtagaaatagcttctacatgagcgcttat 18066059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 36 - 98
Target Start/End: Complemental strand, 42457938 - 42457876
Alignment:
Q  36 aaaacaacttaactttaattaatcttttactatagaaatagcttatacataagcgcttatcat 98  Q
    ||||||| ||||||||| || |||||||||||||||||||| ||||||||||  |||||||||    
T  42457938 aaaacaatttaactttattttatcttttactatagaaatagattatacataaatgcttatcat 42457876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 26 - 97
Target Start/End: Complemental strand, 44600541 - 44600468
Alignment:
Q  26 agcttatatgaaaacaacttaactttaattaatctttta--ctatagaaatagcttatacataagcgcttatca 97  Q
    ||||||||||||||| | ||||||||| || |||||||   ||||||||||||||||||||||||| |||||||    
T  44600541 agcttatatgaaaactatttaactttattttatctttttggctatagaaatagcttatacataagcacttatca 44600468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 24 - 95
Target Start/End: Complemental strand, 25609798 - 25609727
Alignment:
Q  24 atagcttatatgaaaacaacttaactttaattaatcttttactatagaaatagcttatacataagcgcttat 95  Q
    |||||||||| ||||| || || |||||| || |||||||  |||||||||||||||||||||||| |||||    
T  25609798 atagcttatacgaaaataaattgactttattttatcttttcttatagaaatagcttatacataagcacttat 25609727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 30 - 85
Target Start/End: Original strand, 40837502 - 40837557
Alignment:
Q  30 tatatgaaaacaacttaactttaattaatcttttactatagaaatagcttatacat 85  Q
    ||||||||||||| || ||||||||| |||||||  ||||||||||||||||||||    
T  40837502 tatatgaaaacaatttgactttaatttatcttttgttatagaaatagcttatacat 40837557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 24 - 98
Target Start/End: Complemental strand, 43570416 - 43570344
Alignment:
Q  24 atagcttatatgaaaacaacttaactttaattaatcttttactatagaaatagcttatacataagcgcttatcat 98  Q
    |||||||| |||||||||| ||||||| | || || ||||||||||||| ||||||||||  |||||||||||||    
T  43570416 atagcttaaatgaaaacaatttaacttcattttatattttactatagaattagcttatac--aagcgcttatcat 43570344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 24 - 94
Target Start/End: Complemental strand, 2416315 - 2416245
Alignment:
Q  24 atagcttatatgaaaacaacttaactttaattaatcttttactatagaaatagcttatacataagcgctta 94  Q
    ||||||||||| ||||||| ||||||| | || ||||||| ||| ||||||| ||||||||||||| ||||    
T  2416315 atagcttatatcaaaacaatttaacttcattttatcttttgctacagaaataacttatacataagcactta 2416245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 36 - 98
Target Start/End: Complemental strand, 3611216 - 3611154
Alignment:
Q  36 aaaacaacttaactttaattaatcttttactatagaaatagcttatacataagcgcttatcat 98  Q
    ||||||| ||||||||| || | ||||| ||||||||||| ||||||||||||| ||||||||    
T  3611216 aaaacaatttaactttattttaccttttgctatagaaataacttatacataagcacttatcat 3611154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 24 - 94
Target Start/End: Original strand, 18962106 - 18962176
Alignment:
Q  24 atagcttatatgaaaacaacttaactttaattaatcttttactatagaaatagcttatacataagcgctta 94  Q
    ||||||||||||||||||  ||||||||| || |||||||  |||| |||||||| |||||||||| ||||    
T  18962106 atagcttatatgaaaacagtttaactttattttatcttttgttataaaaatagctaatacataagcactta 18962176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 36 - 98
Target Start/End: Original strand, 42420374 - 42420436
Alignment:
Q  36 aaaacaacttaactttaattaatcttttactatagaaatagcttatacataagcgcttatcat 98  Q
    ||||||| ||||| ||| || ||||||| ||||| ||||||||||||| ||||||||||||||    
T  42420374 aaaacaatttaacgttattttatcttttgctataaaaatagcttatacgtaagcgcttatcat 42420436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 28 - 95
Target Start/End: Complemental strand, 3673805 - 3673738
Alignment:
Q  28 cttatatgaaaacaacttaactttaattaatcttttactatagaaatagcttatacataagcgcttat 95  Q
    ||||||||||||||| ||||||||| || || ||||  |||||||||| || |||||||||| |||||    
T  3673805 cttatatgaaaacaatttaactttattttatattttgttatagaaataactaatacataagcacttat 3673738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 44 - 98
Target Start/End: Complemental strand, 4026799 - 4026745
Alignment:
Q  44 ttaactttaattaatcttttactatagaaatagcttatacataagcgcttatcat 98  Q
    ||||||||| || ||||||| ||||| |||||||||||| |||||| ||||||||    
T  4026799 ttaactttattttatcttttgctataaaaatagcttatagataagcacttatcat 4026745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 24 - 98
Target Start/End: Complemental strand, 9395132 - 9395058
Alignment:
Q  24 atagcttatatgaaaacaacttaactttaattaatcttttactatagaaatagcttatacataagcgcttatcat 98  Q
    |||| |||||||||||||| ||| ||||| || ||||||| ||||||||| | ||||||||| || | |||||||    
T  9395132 atagattatatgaaaacaatttagctttattttatctttttctatagaaaaatcttatacatgagtgtttatcat 9395058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 66 - 96
Target Start/End: Original strand, 15288716 - 15288746
Alignment:
Q  66 tatagaaatagcttatacataagcgcttatc 96  Q
    |||||||||||||||||||||||||||||||    
T  15288716 tatagaaatagcttatacataagcgcttatc 15288746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 25 - 95
Target Start/End: Original strand, 17952770 - 17952840
Alignment:
Q  25 tagcttatatgaaaacaacttaactttaattaatcttttactatagaaatagcttatacataagcgcttat 95  Q
    ||||||||||||||| |  || |||||| || |||||||  ||||||||||||||||| |||||| |||||    
T  17952770 tagcttatatgaaaatagtttgactttattttatcttttgttatagaaatagcttatatataagctcttat 17952840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 60 - 94
Target Start/End: Original strand, 40682477 - 40682511
Alignment:
Q  60 ttttactatagaaatagcttatacataagcgctta 94  Q
    |||| ||||||||||||||||||||||||||||||    
T  40682477 ttttgctatagaaatagcttatacataagcgctta 40682511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 28 - 89
Target Start/End: Complemental strand, 5133770 - 5133709
Alignment:
Q  28 cttatatgaaaacaacttaactttaattaatcttttactatagaaatagcttatacataagc 89  Q
    ||||||| ||||||  ||| ||||| || |||||||  ||||||||||||||||||||||||    
T  5133770 cttatataaaaacagtttatctttattttatcttttgttatagaaatagcttatacataagc 5133709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 25 - 94
Target Start/End: Original strand, 11393724 - 11393793
Alignment:
Q  25 tagcttatatgaaaacaacttaactttaattaatcttttactatagaaatagcttatacataagcgctta 94  Q
    ||||||||||||| || | ||| ||||| |  |||||||  |||||||||||||||||||||||| ||||    
T  11393724 tagcttatatgaagacgatttagctttattgtatcttttggtatagaaatagcttatacataagcactta 11393793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 25 - 94
Target Start/End: Original strand, 11410385 - 11410454
Alignment:
Q  25 tagcttatatgaaaacaacttaactttaattaatcttttactatagaaatagcttatacataagcgctta 94  Q
    ||||||||||||| || | ||| ||||| |  |||||||  |||||||||||||||||||||||| ||||    
T  11410385 tagcttatatgaagacgatttagctttattgtatcttttggtatagaaatagcttatacataagcactta 11410454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 35 - 88
Target Start/End: Complemental strand, 44119775 - 44119722
Alignment:
Q  35 gaaaacaacttaactttaattaatcttttactatagaaatagcttatacataag 88  Q
    ||||| || ||||||||| || ||||||||||||| ||||| ||||||||||||    
T  44119775 gaaaaaaaattaactttattttatcttttactataaaaataacttatacataag 44119722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 66 - 98
Target Start/End: Original strand, 32364834 - 32364866
Alignment:
Q  66 tatagaaatagcttatacataagcgcttatcat 98  Q
    ||||||||||||||||||||||| |||||||||    
T  32364834 tatagaaatagcttatacataagtgcttatcat 32364866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 32)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 28 - 98
Target Start/End: Original strand, 402614 - 402683
Alignment:
Q  28 cttatatgaaaacaacttaactttaattaatcttttactatagaaatagcttatacataagcgcttatcat 98  Q
    |||||| |||||||| |||| |||||||| |||||| ||||||||||||||||||||||||| ||||||||    
T  402614 cttatacgaaaacaatttaaatttaatta-tctttttctatagaaatagcttatacataagcccttatcat 402683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 26 - 98
Target Start/End: Original strand, 34638034 - 34638107
Alignment:
Q  26 agcttatatgaaaacaacttaactttaatta-atcttttactatagaaatagcttatacataagcgcttatcat 98  Q
    |||||||| |||||||| ||||||||||||  ||||||| |||||||||||||||||| ||||||| |||||||    
T  34638034 agcttatacgaaaacaatttaactttaattttatctttttctatagaaatagcttatatataagcggttatcat 34638107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 36 - 98
Target Start/End: Original strand, 30573994 - 30574054
Alignment:
Q  36 aaaacaacttaactttaattaatcttttactatagaaatagcttatacataagcgcttatcat 98  Q
    |||| |||||||||||| || |||||||  |||||||||||||||||||||||||||||||||    
T  30573994 aaaaaaacttaactttattttatctttt--tatagaaatagcttatacataagcgcttatcat 30574054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 26 - 95
Target Start/End: Original strand, 905040 - 905109
Alignment:
Q  26 agcttatatgaaaacaacttaactttaattaatcttttactatagaaatagcttatacataagcgcttat 95  Q
    |||||||||| |||||| || |||||| || |||||||  |||||||||||||||||| |||||||||||    
T  905040 agcttatatgcaaacaaattgactttattttatcttttgttatagaaatagcttatacttaagcgcttat 905109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 36 - 95
Target Start/End: Original strand, 2128331 - 2128390
Alignment:
Q  36 aaaacaacttaactttaattaatcttttactatagaaatagcttatacataagcgcttat 95  Q
    ||||||| ||||||||| || |||||||  |||||||||||||||||||||| |||||||    
T  2128331 aaaacaatttaactttattttatcttttgttatagaaatagcttatacataaacgcttat 2128390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 24 - 87
Target Start/End: Complemental strand, 32703140 - 32703077
Alignment:
Q  24 atagcttatatgaaaacaacttaactttaattaatcttttactatagaaatagcttatacataa 87  Q
    ||||||||||||||||||| || | |||| || ||||||||  |||||||||||||||||||||    
T  32703140 atagcttatatgaaaacaatttgagtttattttatcttttataatagaaatagcttatacataa 32703077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 26 - 85
Target Start/End: Complemental strand, 42809301 - 42809242
Alignment:
Q  26 agcttatatgaaaacaacttaactttaattaatcttttactatagaaatagcttatacat 85  Q
    ||||||||||||||||| |||||| || || |||||||  ||||||||||||||||||||    
T  42809301 agcttatatgaaaacaatttaactatattttatcttttgttatagaaatagcttatacat 42809242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 24 - 95
Target Start/End: Original strand, 44061091 - 44061162
Alignment:
Q  24 atagcttatatgaaaacaacttaactttaattaatcttttactatagaaatagcttatacataagcgcttat 95  Q
    ||||||||||  ||||||| ||||| ||| || ||||||| |||||||||||||||||||| ||| ||||||    
T  44061091 atagcttatagaaaaacaatttaaccttattttatcttttgctatagaaatagcttatacagaagtgcttat 44061162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 24 - 86
Target Start/End: Complemental strand, 1395673 - 1395611
Alignment:
Q  24 atagcttatatgaaaacaacttaactttaattaatcttttactatagaaatagcttatacata 86  Q
    |||||||||||||||| || || |||||| || |||||||  |||||||||||||||||||||    
T  1395673 atagcttatatgaaaataatttgactttattttatcttttgttatagaaatagcttatacata 1395611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 21 - 95
Target Start/End: Original strand, 41028916 - 41028990
Alignment:
Q  21 agaatagcttatatgaaaacaacttaactttaattaatcttttactatagaaatagcttatacataagcgcttat 95  Q
    |||||||||||| ||||||||  || |||||| ||  ||||||  |||||||||||||||||||||||| |||||    
T  41028916 agaatagcttatttgaaaacagattgactttattttttcttttgttatagaaatagcttatacataagcacttat 41028990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 24 - 98
Target Start/End: Complemental strand, 50952334 - 50952262
Alignment:
Q  24 atagcttatatgaaaacaacttaactttaattaatcttttactatagaaatagcttatacataagcgcttatcat 98  Q
    ||||||||||||||||||| ||||||||| ||| || |||  ||||||||||||||||||  |||||||||||||    
T  50952334 atagcttatatgaaaacaa-ttaactttattta-tcctttgttatagaaatagcttatactcaagcgcttatcat 50952262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 29 - 81
Target Start/End: Original strand, 15304420 - 15304472
Alignment:
Q  29 ttatatgaaaacaacttaactttaattaatcttttactatagaaatagcttat 81  Q
    |||||||||||||| ||||||||| || |||||||  ||||||||||||||||    
T  15304420 ttatatgaaaacaatttaactttattttatcttttgttatagaaatagcttat 15304472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 24 - 76
Target Start/End: Original strand, 33405235 - 33405287
Alignment:
Q  24 atagcttatatgaaaacaacttaactttaattaatcttttactatagaaatag 76  Q
    ||||||||||||||||||| ||||||||| || | ||||| ||||||||||||    
T  33405235 atagcttatatgaaaacaaattaactttattttaccttttgctatagaaatag 33405287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 23 - 98
Target Start/End: Original strand, 36783401 - 36783477
Alignment:
Q  23 aatagcttatatgaaaacaacttaactttaattaatcttttactatagaaatagc-ttatacataagcgcttatcat 98  Q
    ||||| |||||||||||||| || |||||| || |||||||  |||||||||||| |||||||||| | ||||||||    
T  36783401 aatagtttatatgaaaacaattttactttattttatcttttggtatagaaatagctttatacataaacacttatcat 36783477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 24 - 92
Target Start/End: Original strand, 37689452 - 37689519
Alignment:
Q  24 atagcttatatgaaaacaacttaactttaattaatcttttactatagaaatagcttatacataagcgct 92  Q
    |||||||||||||||| || ||||||||| || |||||||  |||| ||||||||||| ||||||||||    
T  37689452 atagcttatatgaaaataatttaactttactttatcttttgttataaaaatagcttat-cataagcgct 37689519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 28 - 88
Target Start/End: Complemental strand, 52597686 - 52597626
Alignment:
Q  28 cttatatgaaaacaacttaactttaattaatcttttactatagaaatagcttatacataag 88  Q
    |||||||||||||||  | |||| | || |||||||||||| |||||||||||||||||||    
T  52597686 cttatatgaaaacaatgttacttcactttatcttttactatggaaatagcttatacataag 52597626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 66 - 98
Target Start/End: Complemental strand, 54194479 - 54194447
Alignment:
Q  66 tatagaaatagcttatacataagcgcttatcat 98  Q
    |||||||||||||||||||||||||||||||||    
T  54194479 tatagaaatagcttatacataagcgcttatcat 54194447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 28 - 83
Target Start/End: Complemental strand, 52619001 - 52618946
Alignment:
Q  28 cttatatgaaaacaacttaactttaattaatcttttactatagaaatagcttatac 83  Q
    ||||||||||||||| ||||||||| |||||| |||  | ||||||||||||||||    
T  52619001 cttatatgaaaacaatttaactttatttaatcatttgttttagaaatagcttatac 52618946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 24 - 98
Target Start/End: Original strand, 25447312 - 25447386
Alignment:
Q  24 atagcttatatgaaaacaacttaactttaattaatcttttactatagaaatagcttatacataagcgcttatcat 98  Q
    ||||||||||  ||||||| |||| |||| || |||||||||||||||||||| ||| ||| ||| |||| ||||    
T  25447312 atagcttatacaaaaacaatttaagtttattttatcttttactatagaaatagtttacacaaaagtgcttctcat 25447386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 36 - 98
Target Start/End: Original strand, 35127451 - 35127513
Alignment:
Q  36 aaaacaacttaactttaattaatcttttactatagaaatagcttatacataagcgcttatcat 98  Q
    ||||||| ||||||||| |  |||||||  |||||||||||| ||||||||||| ||||||||    
T  35127451 aaaacaatttaactttagtatatcttttgttatagaaatagcctatacataagcacttatcat 35127513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 47 - 97
Target Start/End: Original strand, 35394792 - 35394842
Alignment:
Q  47 actttaattaatcttttactatagaaatagcttatacataagcgcttatca 97  Q
    |||||| || |||||||| ||||||||||| ||||||||||||| ||||||    
T  35394792 actttattttatcttttattatagaaatagattatacataagcgtttatca 35394842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 24 - 82
Target Start/End: Original strand, 49586984 - 49587042
Alignment:
Q  24 atagcttatatgaaaacaacttaactttaattaatcttttactatagaaatagcttata 82  Q
    ||||||||||||||||||  || |||||| || |||||||  |||||||||||||||||    
T  49586984 atagcttatatgaaaacagtttgactttattttatcttttgttatagaaatagcttata 49587042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 57 - 98
Target Start/End: Original strand, 2304342 - 2304383
Alignment:
Q  57 atcttttactatagaaatagcttatacataagcgcttatcat 98  Q
    |||||||| |||||||||||||||||||||| | ||||||||    
T  2304342 atcttttattatagaaatagcttatacataatcacttatcat 2304383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 24 - 89
Target Start/End: Original strand, 8007763 - 8007828
Alignment:
Q  24 atagcttatatgaaaacaacttaactttaattaatcttttactatagaaatagcttatacataagc 89  Q
    ||||||||||||| ||||  || |||||| || |||||||  |||||||| |||||||||||||||    
T  8007763 atagcttatatgataacagtttgactttactttatcttttgttatagaaacagcttatacataagc 8007828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 28 - 81
Target Start/End: Original strand, 10101548 - 10101601
Alignment:
Q  28 cttatatgaaaacaacttaactttaattaatcttttactatagaaatagcttat 81  Q
    ||||||||||||||| ||||||||| || |||||||  |||||||||| |||||    
T  10101548 cttatatgaaaacaatttaactttattttatcttttgttatagaaataacttat 10101601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 28 - 81
Target Start/End: Original strand, 10212473 - 10212526
Alignment:
Q  28 cttatatgaaaacaacttaactttaattaatcttttactatagaaatagcttat 81  Q
    ||||||||||||||| ||||||||| || |||||||  |||||||||| |||||    
T  10212473 cttatatgaaaacaatttaactttattttatcttttgttatagaaataacttat 10212526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 57 - 98
Target Start/End: Complemental strand, 23816022 - 23815981
Alignment:
Q  57 atcttttactatagaaatagcttatacataagcgcttatcat 98  Q
    |||||||| |||||||||| |||||||||||| |||||||||    
T  23816022 atcttttattatagaaataacttatacataagtgcttatcat 23815981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 36 - 81
Target Start/End: Original strand, 30956706 - 30956751
Alignment:
Q  36 aaaacaacttaactttaattaatcttttactatagaaatagcttat 81  Q
    ||||||| ||||||||| || ||||||| |||||||||||||||||    
T  30956706 aaaacaatttaactttattttatcttttgctatagaaatagcttat 30956751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 36 - 81
Target Start/End: Original strand, 30972518 - 30972563
Alignment:
Q  36 aaaacaacttaactttaattaatcttttactatagaaatagcttat 81  Q
    ||||||| ||||||||| || ||||||| |||||||||||||||||    
T  30972518 aaaacaatttaactttattttatcttttgctatagaaatagcttat 30972563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 28 - 101
Target Start/End: Original strand, 35328236 - 35328308
Alignment:
Q  28 cttatatgaaaacaacttaactttaattaatcttttactatagaaatagcttatacataagcgcttatcataat 101  Q
    |||||| |||||||| ||||||||| ||| || ||| |||||| ||||| || |||||||| ||||||||||||    
T  35328236 cttatacgaaaacaatttaactttattta-tcctttgctatagtaataggttgtacataagtgcttatcataat 35328308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 66 - 98
Target Start/End: Complemental strand, 20669139 - 20669107
Alignment:
Q  66 tatagaaatagcttatacataagcgcttatcat 98  Q
    ||||||||||||||||||||||| |||||||||    
T  20669139 tatagaaatagcttatacataagtgcttatcat 20669107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 36 - 80
Target Start/End: Original strand, 36631131 - 36631175
Alignment:
Q  36 aaaacaacttaactttaattaatcttttactatagaaatagctta 80  Q
    ||||||| ||||||||| || ||| ||||||||||||||||||||    
T  36631131 aaaacaatttaactttactttatcctttactatagaaatagctta 36631175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 28)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 24 - 101
Target Start/End: Complemental strand, 51630113 - 51630036
Alignment:
Q  24 atagcttatatgaaaacaacttaactttaattaatcttttactatagaaatagcttatacataagcgcttatcataat 101  Q
    ||||||||||| ||||||| ||||||||| || ||||||| ||||| |||||||||  ||| ||| ||||||||||||    
T  51630113 atagcttatatcaaaacaatttaactttattttatcttttgctatataaatagcttgaacacaagtgcttatcataat 51630036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 36 - 96
Target Start/End: Complemental strand, 7601749 - 7601689
Alignment:
Q  36 aaaacaacttaactttaattaatcttttactatagaaatagcttatacataagcgcttatc 96  Q
    ||||||| ||||||||| || ||| ||| |||||| |||||||||||||||||||||||||    
T  7601749 aaaacaatttaactttattttatcctttgctataggaatagcttatacataagcgcttatc 7601689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 21 - 89
Target Start/End: Original strand, 25487610 - 25487678
Alignment:
Q  21 agaatagcttatatgaaaacaacttaactttaattaatcttttactatagaaatagcttatacataagc 89  Q
    ||||||||||||||||||| ||| | |||||| || || ||||  ||||||||||||||||||||||||    
T  25487610 agaatagcttatatgaaaaaaacgtgactttattttattttttgttatagaaatagcttatacataagc 25487678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 24 - 98
Target Start/End: Original strand, 49004040 - 49004112
Alignment:
Q  24 atagcttatatgaaaacaacttaactttaattaatcttttactatagaaatagcttatacataagcgcttatcat 98  Q
    |||||| ||| |||||||| |||||| |  || ||||||| |||||||||| |||||||||||||||||||||||    
T  49004040 atagctaatacgaaaacaatttaactat--tttatcttttgctatagaaattgcttatacataagcgcttatcat 49004112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 36 - 86
Target Start/End: Complemental strand, 3155593 - 3155543
Alignment:
Q  36 aaaacaacttaactttaattaatcttttactatagaaatagcttatacata 86  Q
    ||||||| ||||||||| || ||||||| ||||||||||||||||||||||    
T  3155593 aaaacaatttaactttattttatcttttgctatagaaatagcttatacata 3155543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 24 - 98
Target Start/End: Original strand, 26520297 - 26520371
Alignment:
Q  24 atagcttatatgaaaacaacttaactttaattaatcttttactatagaaatagcttatacataagcgcttatcat 98  Q
    |||||||| | |||||||| ||||||||| || |||||||  |||||||| || ||||||||||| |||||||||    
T  26520297 atagcttacacgaaaacaatttaactttatttcatcttttgttatagaaacagtttatacataagtgcttatcat 26520371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 24 - 89
Target Start/End: Original strand, 30338660 - 30338725
Alignment:
Q  24 atagcttatatgaaaacaacttaactttaattaatcttttactatagaaatagcttatacataagc 89  Q
    ||||||||||||||||||  ||||||||| |  |||||||  ||||||||||| ||||||||||||    
T  30338660 atagcttatatgaaaacagtttaactttattctatcttttgttatagaaatagtttatacataagc 30338725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 24 - 88
Target Start/End: Complemental strand, 40174565 - 40174503
Alignment:
Q  24 atagcttatatgaaaacaacttaactttaattaatcttttactatagaaatagcttatacataag 88  Q
    ||||||| ||||||||||| |||||||||||| || |||| ||||  ||||||||||||||||||    
T  40174565 atagcttttatgaaaacaatttaactttaatttattttttgctat--aaatagcttatacataag 40174503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 24 - 96
Target Start/End: Complemental strand, 6364151 - 6364079
Alignment:
Q  24 atagcttatatgaaaacaacttaactttaattaatcttttactatagaaatagcttatacataagcgcttatc 96  Q
    ||||||||| |||| | || || |||||| || |||||||  ||||||||||||||||||||||| |||||||    
T  6364151 atagcttatgtgaacagaatttcactttattttatcttttgttatagaaatagcttatacataagtgcttatc 6364079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 32 - 84
Target Start/End: Complemental strand, 7731764 - 7731712
Alignment:
Q  32 tatgaaaacaacttaactttaattaatcttttactatagaaatagcttataca 84  Q
    ||||||||||  ||||||||| ||| ||||||| |||||||||||||||||||    
T  7731764 tatgaaaacagtttaactttatttagtcttttattatagaaatagcttataca 7731712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 58 - 98
Target Start/End: Original strand, 17751224 - 17751264
Alignment:
Q  58 tcttttactatagaaatagcttatacataagcgcttatcat 98  Q
    ||||||| ||||||||||||||||| |||||||||||||||    
T  17751224 tcttttattatagaaatagcttataaataagcgcttatcat 17751264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 24 - 88
Target Start/End: Complemental strand, 30024702 - 30024638
Alignment:
Q  24 atagcttatatgaaaacaacttaactttaattaatcttttactatagaaatagcttatacataag 88  Q
    ||||||||||||||||||| || |||||| || |||||||  |||||||||| ||||| ||||||    
T  30024702 atagcttatatgaaaacaattttactttattttatcttttgttatagaaataacttatgcataag 30024638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 30 - 89
Target Start/End: Complemental strand, 9680660 - 9680601
Alignment:
Q  30 tatatgaaaacaacttaactttaattaatcttttactatagaaatagcttatacataagc 89  Q
    ||||||| ||||| || |||||| || |||||||| ||| ||||||||||||||||||||    
T  9680660 tatatgagaacaatttgactttattttatcttttattatcgaaatagcttatacataagc 9680601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 24 - 95
Target Start/End: Complemental strand, 18630682 - 18630611
Alignment:
Q  24 atagcttatatgaaaacaacttaactttaattaatcttttactatagaaatagcttatacataagcgcttat 95  Q
    ||||||||||||||||| | || |||||| || |||||||  ||| ||||||| |||| |||||||||||||    
T  18630682 atagcttatatgaaaaccaattgactttattttatcttttgttattgaaatagtttatgcataagcgcttat 18630611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 24 - 87
Target Start/End: Original strand, 44119230 - 44119293
Alignment:
Q  24 atagcttatatgaaaacaacttaactttaattaatcttttactatagaaatagcttatacataa 87  Q
    ||||||||||||||||||  || |||||  || ||||||| ||||||||||| |||||||||||    
T  44119230 atagcttatatgaaaacatattgactttgttttatcttttgctatagaaataacttatacataa 44119293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 28 - 89
Target Start/End: Original strand, 437504 - 437566
Alignment:
Q  28 cttatatgaaaacaacttaactttaattaatcttttactatagaaa-tagcttatacataagc 89  Q
    |||||||||| |||| ||||||||| || ||||||| ||||| ||| ||||||||||||||||    
T  437504 cttatatgaacacaatttaactttattttatcttttgctataaaaaatagcttatacataagc 437566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 24 - 89
Target Start/End: Original strand, 8422907 - 8422970
Alignment:
Q  24 atagcttatatgaaaacaacttaactttaattaatcttttactatagaaatagcttatacataagc 89  Q
    |||||||||||||||||||  | |||||| || |||||||  |||| |||||||||||||||||||    
T  8422907 atagcttatatgaaaacaa--tgactttattttatctttttttataaaaatagcttatacataagc 8422970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 24 - 98
Target Start/End: Complemental strand, 11389528 - 11389454
Alignment:
Q  24 atagcttatatgaaaacaacttaactttaattaatcttttactatagaaatagcttatacataagcgcttatcat 98  Q
    |||| |||||| ||||||  ||||||||| || |||||||  ||||||||||  |||||||||||| ||||||||    
T  11389528 atagtttatattaaaacagtttaactttactttatctttttttatagaaataatttatacataagcacttatcat 11389454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 28 - 86
Target Start/End: Complemental strand, 49803209 - 49803151
Alignment:
Q  28 cttatatgaaaacaacttaactttaattaatcttttactatagaaatagcttatacata 86  Q
    ||||| ||||||||| ||||||| | || ||||||| ||||||||||| ||||||||||    
T  49803209 cttatgtgaaaacaatttaacttcattttatcttttgctatagaaataacttatacata 49803151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 24 - 97
Target Start/End: Complemental strand, 26883997 - 26883924
Alignment:
Q  24 atagcttatatgaaaacaacttaactttaattaatcttttactatagaaatagcttatacataagcgcttatca 97  Q
    ||||||||||||||||||| ||||||| | || |||| ||  || ||||||| ||||||||||| | |||||||    
T  26883997 atagcttatatgaaaacaatttaacttcattttatctcttcttagagaaataacttatacataatcacttatca 26883924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 23 - 88
Target Start/End: Original strand, 54392886 - 54392950
Alignment:
Q  23 aatagcttatatgaaaacaacttaactttaattaatcttttactatagaaatagcttatacataag 88  Q
    |||||| ||||  ||||||| ||||||||| ||| | ||||| |||||||||||||||||||||||    
T  54392886 aatagcatatacaaaaacaatttaactttatttatt-ttttattatagaaatagcttatacataag 54392950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 26 - 94
Target Start/End: Original strand, 7368126 - 7368194
Alignment:
Q  26 agcttatatgaaaacaacttaactttaattaatcttttactatagaaatagcttatacataagcgctta 94  Q
    ||||||||||||||||| || |||||| || |  |||||  |||||||||| |||| ||||||||||||    
T  7368126 agcttatatgaaaacaatttgactttattttactttttatcatagaaatagtttattcataagcgctta 7368194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 47 - 87
Target Start/End: Complemental strand, 21193977 - 21193937
Alignment:
Q  47 actttaattaatcttttactatagaaatagcttatacataa 87  Q
    |||||| || ||||||||||||| |||||||||||||||||    
T  21193977 actttattttatcttttactataaaaatagcttatacataa 21193937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 21 - 89
Target Start/End: Original strand, 22684581 - 22684649
Alignment:
Q  21 agaatagcttatatgaaaacaacttaactttaattaatcttttactatagaaatagcttatacataagc 89  Q
    |||| ||||||||||||||||| || |||||| || | | |||  ||||||||||||||||||| ||||    
T  22684581 agaacagcttatatgaaaacaatttgactttattttaccgtttgttatagaaatagcttatacagaagc 22684649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 24 - 76
Target Start/End: Complemental strand, 23459630 - 23459578
Alignment:
Q  24 atagcttatatgaaaacaacttaactttaattaatcttttactatagaaatag 76  Q
    |||||||||| |||||||||||||||| | || ||||||| ||||| ||||||    
T  23459630 atagcttataagaaaacaacttaacttcattttatcttttgctataaaaatag 23459578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 24 - 92
Target Start/End: Original strand, 27043898 - 27043966
Alignment:
Q  24 atagcttatatgaaaacaacttaactttaattaatcttttactatagaaatagcttatacataagcgct 92  Q
    |||||||||| |||||||| ||||||||| || ||| |||  |||| || || ||||||||||||||||    
T  27043898 atagcttatacgaaaacaatttaactttattttatcctttgttatataagtaccttatacataagcgct 27043966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 24 - 88
Target Start/End: Original strand, 44007940 - 44008004
Alignment:
Q  24 atagcttatatgaaaacaacttaactttaattaatcttttactatagaaatagcttatacataag 88  Q
    ||||||||||||||||||| ||  ||||| || |||||||  ||||| ||||||||||| |||||    
T  44007940 atagcttatatgaaaacaatttgtctttattttatcttttggtatagtaatagcttatatataag 44008004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 66 - 98
Target Start/End: Complemental strand, 53137999 - 53137967
Alignment:
Q  66 tatagaaatagcttatacataagcgcttatcat 98  Q
    |||||||||| ||||||||||||||||||||||    
T  53137999 tatagaaataacttatacataagcgcttatcat 53137967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 26 - 88
Target Start/End: Original strand, 27121656 - 27121718
Alignment:
Q  26 agcttatatgaaaacaacttaactttaattaatcttttactatagaaatagcttatacataag 88  Q
    ||||||||||||||||| || |||||| || ||| |||| |||||||||| ||||||||||||    
T  27121656 agcttatatgaaaacaatttgactttattttatcatttattatagaaatatcttatacataag 27121718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 28 - 89
Target Start/End: Complemental strand, 35536105 - 35536044
Alignment:
Q  28 cttatatgaaaacaacttaactttaattaatcttttactatagaaatagcttatacataagc 89  Q
    ||||||||||||||| || |||||| || ||||| |  ||||||||||||||||||||||||    
T  35536105 cttatatgaaaacaatttgactttattttatcttatgttatagaaatagcttatacataagc 35536044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 24 - 77
Target Start/End: Original strand, 40689054 - 40689107
Alignment:
Q  24 atagcttatatgaaaacaacttaactttaattaatcttttactatagaaatagc 77  Q
    |||||||||||||||| || ||||||||| || ||||||| |||||||||||||    
T  40689054 atagcttatatgaaaataatttaactttattttatcttttgctatagaaatagc 40689107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 24 - 89
Target Start/End: Original strand, 45813248 - 45813313
Alignment:
Q  24 atagcttatatgaaaacaacttaactttaattaatcttttactatagaaatagcttatacataagc 89  Q
    |||| |||||||||||||| || |||||| || |||||||  ||||||||||||||||| ||||||    
T  45813248 atagattatatgaaaacaagttgactttattttatcttttggtatagaaatagcttataaataagc 45813313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 66 - 98
Target Start/End: Original strand, 33552931 - 33552963
Alignment:
Q  66 tatagaaatagcttatacataagcgcttatcat 98  Q
    |||||||||||||||||||||||||||||||||    
T  33552931 tatagaaatagcttatacataagcgcttatcat 33552963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 65 - 101
Target Start/End: Complemental strand, 33673039 - 33673003
Alignment:
Q  65 ctatagaaatagcttatacataagcgcttatcataat 101  Q
    |||||||| ||||||||||||||||||||||||||||    
T  33673039 ctatagaagtagcttatacataagcgcttatcataat 33673003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 24 - 87
Target Start/End: Original strand, 48157188 - 48157251
Alignment:
Q  24 atagcttatatgaaaacaacttaactttaattaatcttttactatagaaatagcttatacataa 87  Q
    ||||||||||| ||||||| || |||||| || |||||||| ||||||||||  ||||||||||    
T  48157188 atagcttatattaaaacaatttcactttattttatcttttattatagaaataagttatacataa 48157251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 25 - 87
Target Start/End: Original strand, 2012683 - 2012745
Alignment:
Q  25 tagcttatatgaaaacaacttaactttaattaatcttttactatagaaatagcttatacataa 87  Q
    |||||||||||||||||| || || ||| ||||| ||||   |||||||||||||||||||||    
T  2012683 tagcttatatgaaaacaatttgacattatttaatattttggcatagaaatagcttatacataa 2012745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 25 - 87
Target Start/End: Complemental strand, 2030710 - 2030648
Alignment:
Q  25 tagcttatatgaaaacaacttaactttaattaatcttttactatagaaatagcttatacataa 87  Q
    |||||||||||||||||| || || ||| ||||| ||||   |||||||||||||||||||||    
T  2030710 tagcttatatgaaaacaatttgacattatttaatattttggcatagaaatagcttatacataa 2030648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 25 - 95
Target Start/End: Complemental strand, 22759187 - 22759117
Alignment:
Q  25 tagcttatatgaaaacaacttaactttaattaatcttttactatagaaatagcttatacataagcgcttat 95  Q
    |||||||||||||||||| ||  ||||| || |||||||  |||| |||||||||| |||||| |||||||    
T  22759187 tagcttatatgaaaacaattttcctttattttatcttttgttatacaaatagcttaaacataaacgcttat 22759117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 24 - 98
Target Start/End: Complemental strand, 47177638 - 47177564
Alignment:
Q  24 atagcttatatgaaaacaacttaactttaattaatcttttactatagaaatagcttatacataagcgcttatcat 98  Q
    ||||||||||||||||||| ||||||||  ||  | ||||  |||||||||| |||||||| ||| |||||||||    
T  47177638 atagcttatatgaaaacaatttaactttgttttgtattttgatatagaaataccttatacagaagggcttatcat 47177564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 29 - 82
Target Start/End: Complemental strand, 35266896 - 35266843
Alignment:
Q  29 ttatatgaaaacaacttaactttaattaatcttttactatagaaatagcttata 82  Q
    ||||||||||| || ||||||||| |||||| |||  |||||||||||||||||    
T  35266896 ttatatgaaaaaaatttaactttatttaatcatttgttatagaaatagcttata 35266843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 24 - 84
Target Start/End: Original strand, 43152969 - 43153030
Alignment:
Q  24 atagcttatatgaaaa-caacttaactttaattaatcttttactatagaaatagcttataca 84  Q
    ||||||| |||||||| ||| ||||||||| || |||||||  |||||||||||||||||||    
T  43152969 atagcttgtatgaaaaacaatttaactttattttatcttttgttatagaaatagcttataca 43153030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 27 - 87
Target Start/End: Complemental strand, 1417263 - 1417203
Alignment:
Q  27 gcttatatgaaaacaacttaactttaattaatcttttactatagaaatagcttatacataa 87  Q
    |||||||||||||||| || |||||| || |||||||  |||| |||||| ||||||||||    
T  1417263 gcttatatgaaaacaatttgactttattttatcttttgttatataaatagtttatacataa 1417203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 36 - 96
Target Start/End: Original strand, 8960707 - 8960767
Alignment:
Q  36 aaaacaacttaactttaattaatcttttactatagaaatagcttatacataagcgcttatc 96  Q
    ||||||| ||||||||| || ||| ||| |||||| |||||| ||||||||||| ||||||    
T  8960707 aaaacaatttaactttattttatcatttgctataggaatagcatatacataagcccttatc 8960767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 57 - 101
Target Start/End: Original strand, 19214492 - 19214536
Alignment:
Q  57 atcttttactatagaaatagcttatacataagcgcttatcataat 101  Q
    ||||||| ||||| ||||||||||||||||||  |||||||||||    
T  19214492 atcttttgctataaaaatagcttatacataagttcttatcataat 19214536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 26 - 94
Target Start/End: Complemental strand, 33894622 - 33894555
Alignment:
Q  26 agcttatatgaaaacaacttaactttaattaatcttttactatagaaatagcttatacataagcgctta 94  Q
    ||||||||||||||||  || |||| | || |||||||  |||||||||||||||||||||||| ||||    
T  33894622 agcttatatgaaaacagtttgactt-attttatcttttgttatagaaatagcttatacataagcactta 33894555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0590 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0590
Description:

Target: scaffold0590; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 47 - 95
Target Start/End: Original strand, 1165 - 1213
Alignment:
Q  47 actttaattaatcttttactatagaaatagcttatacataagcgcttat 95  Q
    |||||| || |||||||  |||||||||||||||||||||||| |||||    
T  1165 actttattttatcttttgttatagaaatagcttatacataagcacttat 1213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0275 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0275
Description:

Target: scaffold0275; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 47 - 95
Target Start/End: Complemental strand, 2810 - 2762
Alignment:
Q  47 actttaattaatcttttactatagaaatagcttatacataagcgcttat 95  Q
    |||||| || |||||||  |||||||||||||||||||||||| |||||    
T  2810 actttattttatcttttgttatagaaatagcttatacataagcacttat 2762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University