View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9084_low_9 (Length: 288)
Name: NF9084_low_9
Description: NF9084
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9084_low_9 |
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Alignment Details
Target: chr8 (Bit Score: 244; Significance: 1e-135; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 1 - 276
Target Start/End: Original strand, 8606242 - 8606517
Alignment:
| Q |
1 |
tggttcatatatatatttatgctttctgtcctttcattgcgtctttaattaatttggttctaagttctaactttctcctttctaatagttatttcgtttt |
100 |
Q |
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| T |
8606242 |
tggttcatatatatatttatgctttctgtcctttcactgcatctttaattaatttggttctaacttctaactttctcctttctaatagttatttcgtttt |
8606341 |
T |
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| Q |
101 |
ttctgatgtattcaaatgtgatgcaggataaatttgaaaaatgaaaattggaattatcttccaagtttgtttcggaagagaacggaggtgataactgata |
200 |
Q |
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| T |
8606342 |
ttctgatgtgttcaaatgtgatgcaggataaatttgaaaaaagaaaattggaattatcttccaagtttgtttcggaagagaatggaggtgataactgata |
8606441 |
T |
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| Q |
201 |
atcaacgatatgatccacataaatacgatctggcttacacatatgaatagatttggttggaaaggtttttggtctc |
276 |
Q |
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| T |
8606442 |
atcaacgatatgatccacataaatacgatctggcttacatatatgaatagatttggttgtaaaggtttttggtctc |
8606517 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 79 - 194
Target Start/End: Original strand, 8576688 - 8576803
Alignment:
| Q |
79 |
tttctaatagttatttcgttttttctgatgtattcaaatgtgatgcaggataaatttgaaaaatgaaaattggaattatcttccaagtttgtttcggaag |
178 |
Q |
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| T |
8576688 |
tttctaatagttatttagttttttctgatgtattcaaatgtgatgcaggataaatttgaaaaaagaaaatcggaattatcttcaaagttcgtttcgggag |
8576787 |
T |
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| Q |
179 |
agaacggaggtgataa |
194 |
Q |
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| T |
8576788 |
agaacggaggtgataa |
8576803 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 99 - 188
Target Start/End: Original strand, 8580599 - 8580688
Alignment:
| Q |
99 |
ttttctgatgtattcaaatgtgatgcaggataaatttgaaaaatgaaaattggaattatcttccaagtttgtttcggaagagaacggagg |
188 |
Q |
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|||| ||||||||||||||||||||||||||||||||||| || |||||||||||||| ||| |||||||||||| |||||| ||||| |
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| T |
8580599 |
ttttatgatgtattcaaatgtgatgcaggataaatttgaacaaaaaaaattggaattattttcgaagtttgtttcgcgagagaatggagg |
8580688 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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