View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9085_low_2 (Length: 299)

Name: NF9085_low_2
Description: NF9085
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9085_low_2
NF9085_low_2
[»] chr5 (1 HSPs)
chr5 (1-299)||(11670915-11671211)


Alignment Details
Target: chr5 (Bit Score: 262; Significance: 1e-146; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 1 - 299
Target Start/End: Original strand, 11670915 - 11671211
Alignment:
Q  1 ctataacagcactcatggttaatataagaaattaaaaatcaattatcaaataccatactatacaagacactagcacaagtaattaaatttttggaactat 100  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11670915 ctataacagcactcatggttaatataacaaattaaaaatcaattatcaaataccatactatacaagacactagcacaagtaattaaatttttggaactat 11671014  T
Q  101 t-atagtaacattaaaaacatgaacttcactgattcatacagcagcaccacgtgaaaacaaaagtactacacaggaaactcacgagccagctgaaaaaca 199  Q
    | ||||||||||||||||||||||||||||||||||||||||||   | |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11671015 ttatagtaacattaaaaacatgaacttcactgattcatacagca---caacgtgaaaacaaaagtactacacaggaaactcacgagccagctgaaaaaca 11671111  T
Q  200 ttatctgttgttggattcacaagatgtttcctaggaccacgatggcttccatgattcatccatgtcttcttttgccatctctttcgcggttctcgagctt 299  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  11671112 ttctctgttgttggattcacaagatgtttcctaggaccacgatggcttccatgattcatccatgtcttcttttgccatctctttcgcggttttcgagctt 11671211  T

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