View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9086_low_11 (Length: 291)
Name: NF9086_low_11
Description: NF9086
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9086_low_11 |
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Alignment Details
Target: chr5 (Bit Score: 273; Significance: 1e-152; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 1 - 281
Target Start/End: Complemental strand, 28411367 - 28411087
Alignment:
| Q |
1 |
cctctctgaagtgatcacgatgatcaaatgatattgttgtagagattggtattagtattttagtattctgtcctggtattccataatccgatttctcgtg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28411367 |
cctctctgaagtgatcacgatgatcaaatgatattgttgtagagattggtattagtattttagtattctgtcctggtattccataatccgatttctcgtg |
28411268 |
T |
|
| Q |
101 |
aagtaattgttgataacaatcttgttctgcatacatctatctcttgctagtatttcctgctcaatgtagctctctcatatatgtcatcgtctgacatcga |
200 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
28411267 |
aagtaattgtcgataacaatcttgttctgcatacatctatctcttgctagtatttcctgctcaatgtagcactctcatatatgtcatcgtctgacatcga |
28411168 |
T |
|
| Q |
201 |
tacatgcggttatactcaaatatttccactttttcaaattattaccagcaaccacatatcagtgtcatgtctgatgtccat |
281 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28411167 |
tacatgcggttatactcaaatatttccactttttcaaattattaccagcaaccacatatcagtgtcatgtctgatgtccat |
28411087 |
T |
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