View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9086_low_12 (Length: 265)

Name: NF9086_low_12
Description: NF9086
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9086_low_12
NF9086_low_12
[»] chr4 (6 HSPs)
chr4 (15-251)||(6020418-6020654)
chr4 (40-162)||(48804142-48804262)
chr4 (20-202)||(26070742-26070923)
chr4 (20-93)||(42912510-42912583)
chr4 (35-193)||(51702150-51702303)
chr4 (137-215)||(42912426-42912504)
[»] chr2 (2 HSPs)
chr2 (20-197)||(20262652-20262825)
chr2 (106-196)||(28772046-28772136)
[»] chr1 (2 HSPs)
chr1 (35-197)||(24886629-24886787)
chr1 (36-104)||(27292234-27292303)
[»] chr3 (2 HSPs)
chr3 (41-199)||(51925801-51925956)
chr3 (106-207)||(28690213-28690314)
[»] chr7 (1 HSPs)
chr7 (20-168)||(26285960-26286104)
[»] chr8 (1 HSPs)
chr8 (35-203)||(26130118-26130285)
[»] chr5 (2 HSPs)
chr5 (35-196)||(12658521-12658677)
chr5 (39-102)||(25640394-25640458)


Alignment Details
Target: chr4 (Bit Score: 213; Significance: 1e-117; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 15 - 251
Target Start/End: Complemental strand, 6020654 - 6020418
Alignment:
Q  15 acatcagtggttaagacaataactctaaacaacactactacggatagtccagcaaacccacgtgtggatgcgaaaccgacttgcaaaaaataaaatgcag 114  Q
    |||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6020654 acataagtggttaagacaataactctaaacaacactactatggatagtccagcaaacccacgtgtggatgcgaaaccgacttgcaaaaaataaaatgcag 6020555  T
Q  115 agtgaatgtttagagtatccaagtaggtgtatgaatcgtctaccaacatagaaacgttcgaaggtccaaaagctccctaaaaaacatcaacaaaccataa 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  6020554 agtgaatgtttagagtatccaagtaggtgtatgaatcgtctaccaacatagaaacgttccaaggtccaaaagctccctaaaaaacatcaacaaaccataa 6020455  T
Q  215 acaccctttcggatcaaaccaatcagagtgatgtcca 251  Q
    || |||||||||| ||||||||||||||||| |||||    
T  6020454 acgccctttcggaccaaaccaatcagagtgaagtcca 6020418  T

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Target: chr4; HSP #2
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 40 - 162
Target Start/End: Complemental strand, 48804262 - 48804142
Alignment:
Q  40 taaacaacactactacggatagtccagcaaacccacgtgtggatgcgaaaccgacttgcaaaaaataaaatgcagagtgaatgtttagagtatccaagta 139  Q
    ||||||||||||||||||| || ||||| ||||||||||||||| |||||||||  ||||||||  |||||||||||||| || |||||||||| | |||    
T  48804262 taaacaacactactacggacagcccagcgaacccacgtgtggatacgaaaccgaactgcaaaaa--aaaatgcagagtgagtggttagagtatcaaggta 48804165  T
Q  140 ggtgtatgaatcgtctaccaaca 162  Q
    || ||||||||||||| ||||||    
T  48804164 ggcgtatgaatcgtctgccaaca 48804142  T

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Target: chr4; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 20 - 202
Target Start/End: Complemental strand, 26070923 - 26070742
Alignment:
Q  20 agtggttaagacaataactctaaacaacactactacggatagtccagcaaacccacgtgtggatgcgaaaccgacttgcaaaaaataaaatgcagagtga 119  Q
    |||||| |||| || |||||||||||||||||||||||||||  |||| ||||||| ||||||| |||| ||||  |||||||   || | |||||||||    
T  26070923 agtggtaaagaaaacaactctaaacaacactactacggatagcgcagcgaacccacatgtggatacgaagccgaaatgcaaaa---aagacgcagagtga 26070827  T
Q  120 atgtttagagtat--ccaagtaggtgtatgaatcgtctaccaacatagaaacgttcgaaggtccaaaagctccctaaaaaacatc 202  Q
    ||||| | |||||    | |||||  | |||||||||  |||||| |||||||  | ||||||||| | ||||||||||||||||    
T  26070826 atgttcaaagtattataaggtaggcatttgaatcgtccgccaacacagaaacgacccaaggtccaacaactccctaaaaaacatc 26070742  T

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Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 20 - 93
Target Start/End: Complemental strand, 42912583 - 42912510
Alignment:
Q  20 agtggttaagacaataactctaaacaacactactacggatagtccagcaaacccacgtgtggatgcgaaaccga 93  Q
    |||||| |||| || |||||||||||||||||| ||||| | |||||| || ||||||||||||||||||||||    
T  42912583 agtggtaaagaaaacaactctaaacaacactaccacggacaatccagcgaatccacgtgtggatgcgaaaccga 42912510  T

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Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 35 - 193
Target Start/End: Complemental strand, 51702303 - 51702150
Alignment:
Q  35 aactctaaacaacactactacggatagtccagcaaacccacgtgtggatgcgaaaccgacttgcaaaaaataaaatgcagagtgaatgtttagagtatcc 134  Q
    |||||||||||||||| | ||||  | |||||| ||||||||| ||||| ||||||||| || ||||||| || ||  ||||||||||||  |||||| |    
T  51702303 aactctaaacaacacttccacgggcaatccagcgaacccacgtatggattcgaaaccgaattacaaaaaaaaacat--agagtgaatgttccgagtat-c 51702207  T
Q  135 aagtaggtgtatgaatcgtctaccaacatagaaacgttcgaaggtccaaaagctcccta 193  Q
    ||||  | ||||||||||||| |||| | ||||||| || ||||||||  |||||||||    
T  51702206 aagt--gcgtatgaatcgtctgccaaaacagaaacgatccaaggtccagcagctcccta 51702150  T

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Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 137 - 215
Target Start/End: Complemental strand, 42912504 - 42912426
Alignment:
Q  137 gtaggtgtatgaatcgtctaccaacatagaaacgttcgaaggtccaaaagctccctaaaaaacatcaacaaaccataaa 215  Q
    ||||||||||||||||||| | |||| |||| || || ||||||||| |||||||| |||||||||| ||| |||||||    
T  42912504 gtaggtgtatgaatcgtctgctaacacagaagcgatccaaggtccaacagctccctgaaaaacatcagcaagccataaa 42912426  T

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Target: chr2 (Bit Score: 61; Significance: 3e-26; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 20 - 197
Target Start/End: Original strand, 20262652 - 20262825
Alignment:
Q  20 agtggttaagacaataactctaaacaacactactacggatagtccagcaaacccacgtgtggatgcgaaaccgacttgcaaaaaataaaatgcagagtga 119  Q
    |||||| |||| || |||||||||||||| ||||||||| |  ||||| ||||||||| ||||| |||||  ||  ||||||    ||||||||||||||    
T  20262652 agtggtaaagaaaacaactctaaacaacaatactacggacaacccagcgaacccacgtatggatacgaaattgaactgcaaa----aaaatgcagagtga 20262747  T
Q  120 atgtttagagtatccaagtaggtgtatgaatcgtctaccaacatagaaacgttcgaaggtccaaaagctccctaaaaa 197  Q
    | |||||||||||  | ||||| ||||||||||||| |||||| ||||||| |  ||||||||| |||||||||||||    
T  20262748 aagtttagagtattaaggtaggcgtatgaatcgtctgccaacacagaaacgattcaaggtccaacagctccctaaaaa 20262825  T

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Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 106 - 196
Target Start/End: Original strand, 28772046 - 28772136
Alignment:
Q  106 aaaatgcagagtgaatgtttagagtatccaagtaggtgtatgaatcgtctaccaacatagaaacgttcgaaggtccaaaagctccctaaaa 196  Q
    ||||||||| |||||||||||||||||| | ||||||||||||||||| | ||| || |||||   || ||||||||| ||||||||||||    
T  28772046 aaaatgcagcgtgaatgtttagagtatcaaggtaggtgtatgaatcgtttgccagcacagaaatcatccaaggtccaacagctccctaaaa 28772136  T

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Target: chr1 (Bit Score: 58; Significance: 2e-24; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 35 - 197
Target Start/End: Complemental strand, 24886787 - 24886629
Alignment:
Q  35 aactctaaacaacactactacggatagtccagcaaacccacgtgtggatgcgaaaccgacttgcaaaaaataaaatgcagagtgaatgtttagagtatcc 134  Q
    ||||||||||||||||||||| || || ||||| ||||||||| ||||| |||||||||  ||||||    |||| ||| |||||| |||||||||||      
T  24886787 aactctaaacaacactactacagacagcccagcgaacccacgtatggatacgaaaccgaactgcaaa----aaaacgcatagtgaaagtttagagtatta 24886692  T
Q  135 aagtaggtgtatgaatcgtctaccaacatagaaacgttcgaaggtccaaaagctccctaaaaa 197  Q
    | |||||  ||||||||||||||||||| ||||||| |  ||||||||| |||||| ||||||    
T  24886691 aggtaggaatatgaatcgtctaccaacacagaaacgattcaaggtccaacagctccataaaaa 24886629  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 36 - 104
Target Start/End: Original strand, 27292234 - 27292303
Alignment:
Q  36 actctaaacaa-cactactacggatagtccagcaaacccacgtgtggatgcgaaaccgacttgcaaaaaa 104  Q
    ||||||||||| |||||| ||||| |  |||||||||||||||||||   ||||||||| ||||||||||    
T  27292234 actctaaacaatcactaccacggacaaaccagcaaacccacgtgtgggcacgaaaccgaattgcaaaaaa 27292303  T

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Target: chr3 (Bit Score: 49; Significance: 4e-19; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 41 - 199
Target Start/End: Original strand, 51925801 - 51925956
Alignment:
Q  41 aaacaacactactacggatagtccagcaaacccacgtgtggatgcgaaaccgacttgcaaaaaataaaatgcagagtgaatgtttagagtatccaagtag 140  Q
    ||||||||||||||| |  || ||| | ||||||| ||||||| ||||||| |  || ||||   |||||||||  ||||||||||||||||| | ||||    
T  51925801 aaacaacactactacagccagcccaacgaacccacatgtggatacgaaaccaaactggaaaa---aaaatgcagcatgaatgtttagagtatcaaggtag 51925897  T
Q  141 gtgtatgaatcgtctaccaacatagaaacgttcgaaggtccaaaagctccctaaaaaac 199  Q
    | ||||||||||||| |||||| | |||||  | ||||||||| |||||||||||||||    
T  51925898 gcgtatgaatcgtctgccaacacataaacgacccaaggtccaacagctccctaaaaaac 51925956  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 106 - 207
Target Start/End: Complemental strand, 28690314 - 28690213
Alignment:
Q  106 aaaatgcagagtgaatgtttagagtatccaagtaggtgtatgaatcgtctaccaacatagaaacgttcgaaggtccaaaagctccctaaaaaacatcaac 205  Q
    |||| |||| ||||||||||| |||||| | ||| | |||||||||| || |||||| | ||||| || ||||||||| | || |||||||||  |||||    
T  28690314 aaaacgcagcgtgaatgtttatagtatcgaggtaagcgtatgaatcgcctgccaacacataaacgatccaaggtccaacaacttcctaaaaaaattcaac 28690215  T
Q  206 aa 207  Q
    ||    
T  28690214 aa 28690213  T

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Target: chr7 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 20 - 168
Target Start/End: Original strand, 26285960 - 26286104
Alignment:
Q  20 agtggttaagacaataactctaaacaacactactacggatagtccagcaaacccacgtgtggatgcgaaaccgacttgcaaaaaataaaatgcagagtga 119  Q
    ||||||||||| || |||||||||||| |||||||| || ||  |||  ||||| ||||||||| | ||||| |  |||||||||    | |||||||||    
T  26285960 agtggttaagaaaacaactctaaacaagactactacagacagatcagtgaaccctcgtgtggatacaaaaccaaactgcaaaaaa----acgcagagtga 26286055  T
Q  120 atgtttagagtatccaagtaggtgtatgaatcgtctaccaacatagaaa 168  Q
    | |||||||||||| ||||||| ||||||||||||| |||||| |||||    
T  26286056 aagtttagagtatcaaagtaggcgtatgaatcgtctgccaacacagaaa 26286104  T

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Target: chr8 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 35 - 203
Target Start/End: Complemental strand, 26130285 - 26130118
Alignment:
Q  35 aactctaaacaacactactacgg---atagtccagcaaacccacgtgtggatgcgaaaccgacttgcaaaaaataaaatgcagagtgaatgtttagagta 131  Q
    |||||||||||||| |||||| |   | || ||||| ||||||||||||||| ||||||| |  |||||||||  |    | |||||  |||||||||||    
T  26130285 aactctaaacaacagtactactgcagacagcccagcgaacccacgtgtggatacgaaaccaaactgcaaaaaaaca----ctgagtgggtgtttagagta 26130190  T
Q  132 tccaagtaggtgtatgaatcgtctaccaacatagaaacgttcgaaggtccaaaagctccctaaaaaacatca 203  Q
    || | ||||| ||||||||||||| |||| | ||||||| |  ||| ||||| |||||||||||||||||||    
T  26130189 tctaggtaggcgtatgaatcgtctgccaaaacagaaacgattcaagatccaacagctccctaaaaaacatca 26130118  T

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Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 35 - 196
Target Start/End: Complemental strand, 12658677 - 12658521
Alignment:
Q  35 aactctaaacaacactactacggatagtccagcaaacccacgtgtggatgcgaaaccgacttgcaaaaaataaaatgcagagtgaatgtttagagtatcc 134  Q
    |||||||||| | ||||| ||||| | ||||||| | |||||| ||||||||||||||| |||||||     ||||||||||||  |||| | |||||      
T  12658677 aactctaaaccaaactaccacggacaatccagcacaaccacgtatggatgcgaaaccgaattgcaaa-----aaatgcagagtggttgttcatagtatta 12658583  T
Q  135 aagtaggtgtatgaatcgtctaccaacatagaaacgttcgaaggtccaaaagctccctaaaa 196  Q
    ||||||  ||||| ||| ||| |||||| | ||||| || ||||||||  ||||||||||||    
T  12658582 aagtagacgtatggatcatctgccaacacataaacgatccaaggtccagcagctccctaaaa 12658521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 39 - 102
Target Start/End: Original strand, 25640394 - 25640458
Alignment:
Q  39 ctaaacaa-cactactacggatagtccagcaaacccacgtgtggatgcgaaaccgacttgcaaaa 102  Q
    |||||||| |||||| ||||| | |||||| |||||||||||||  |||||||||| ||||||||    
T  25640394 ctaaacaatcactaccacggacaatccagcgaacccacgtgtgggcgcgaaaccgaattgcaaaa 25640458  T

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