View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9086_low_13 (Length: 253)
Name: NF9086_low_13
Description: NF9086
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9086_low_13 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 175; Significance: 3e-94; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 11 - 253
Target Start/End: Complemental strand, 31712587 - 31712346
Alignment:
| Q |
11 |
aagcagagatattaacctcttcatggttgaaagtgaaaatcacagatttgtcttttgatcttcaactatggtggcatagcccaattgtttgtatgagttt |
110 |
Q |
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| T |
31712587 |
aagcaaagatattaacctcttcatggttgaaagtgaaaatcacagttttgtcttttgatcttcaactatggtggcatagcccaattgtttgtatgagttt |
31712488 |
T |
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| Q |
111 |
tgttacatcgtcgtgagcttttttgttttctgctcgactttcaaggttgttgtactttgatac--tttagagtcgtttccaagtactcacaccttatgtt |
208 |
Q |
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| T |
31712487 |
tgtta-atcatcgtgaacttttttgttttctgctcgactttcaagataattgtactttgatactttttagagtcgtttcgaagtact--caccttgcgtt |
31712391 |
T |
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| Q |
209 |
ggttttgacactttgctagattaatatattttattttggtgtttt |
253 |
Q |
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| T |
31712390 |
ggttttgacactttgctagattaatatattttattttggtgtttt |
31712346 |
T |
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Target: chr6 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 33 - 116
Target Start/End: Complemental strand, 19220369 - 19220286
Alignment:
| Q |
33 |
atggttgaaagtgaaaatcacagatttgtcttttgatcttcaactatggtggcatagcccaattgtttgtatgagttttgttac |
116 |
Q |
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| T |
19220369 |
atggttgaaagagaaaaacaatgttttggcttttgatcttcaactctagtggcatagcccaattttttgtttgagatttgttac |
19220286 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 74 - 139
Target Start/End: Original strand, 7296501 - 7296566
Alignment:
| Q |
74 |
aactatggtggcatagcccaattgtttgtatgagttttgttacatcgtcgtgagcttttttgtttt |
139 |
Q |
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| T |
7296501 |
aactttggtggcataatccaattatttgtatgagttatgttacataatcgtgtgcttttttgtttt |
7296566 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 36 - 139
Target Start/End: Complemental strand, 12782134 - 12782031
Alignment:
| Q |
36 |
gttgaaagtgaaaatcacagatttgtcttttgatcttcaactatggtggcatagcccaattgtttgtatgagttttgttacatcgtcgtgagcttttttg |
135 |
Q |
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| T |
12782134 |
gttgaaagcgaaaatttcggttttgtcttttgatgttcaacaattgtgggataacacatttgtttgtatgggtttggttacatagttgtgagtttttttc |
12782035 |
T |
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| Q |
136 |
tttt |
139 |
Q |
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|||| |
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| T |
12782034 |
tttt |
12782031 |
T |
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