View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9086_low_2 (Length: 721)
Name: NF9086_low_2
Description: NF9086
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9086_low_2 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 552; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 552; E-Value: 0
Query Start/End: Original strand, 80 - 703
Target Start/End: Complemental strand, 55337457 - 55336838
Alignment:
| Q |
80 |
taatttcacatgacatgaactcattagcttcattttttaatactaaaaacatgttattttattgtgtgtatacaaatattcctacatttggtccataggt |
179 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55337457 |
taatttcacatgacatgaactcattagcttcattttttaatactaaaaacatgttattttattgtgtgtatacaaatattcctacatttggtccataggt |
55337358 |
T |
|
| Q |
180 |
atctaagaacctatttgtttaatacctcccataactctt-gtcttaaaaaattgaataaaactataacattacaagttgcactcatcctccctgtcacaa |
278 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55337357 |
atctaagaacctatttgtttaatacctcccataactctttgtactaaaaaattgaataaaactataacattacaagttgcactcatcctccctgtcacaa |
55337258 |
T |
|
| Q |
279 |
tagtatagtatatatataaacctttcctcactaacactaaacacaaagcaaaacataattaacatacgtacaatcatttcattttcatggcttccatgca |
378 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55337257 |
tagtata-----tatataaacctttcctcactaacactaaacacaaatcaaaacataattaacatacgtacaatcatttcattttcatggcttccatgca |
55337163 |
T |
|
| Q |
379 |
cacctcaacttcttctttttctttcttgtcttcaaaaagaggaaatgtgaatgcctcaatccatttcccaagacccaattctttacttcctaagaatagg |
478 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55337162 |
cacctcaacttcttctttttctttcttgtcttcaaaaagaggtaatgtgaatgcctcaatccatttcccaagacccaattctttacttcctaagaatagg |
55337063 |
T |
|
| Q |
479 |
atacccactgcaaagctggttgaagggttaaccttcaaagactcagttccttcattattgcttgnnnnnnntgtcatcaataggacacataatttacacc |
578 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
55337062 |
atacccactgcaaagctggttgaagggttaaccttcaaagactcagttccttcattattgcttgaaaaaaatgtcatcaataggacacataatttacacc |
55336963 |
T |
|
| Q |
579 |
atgatttatccaattctacaatcaataactccaacaccgtgcaactctatgctatcttagattctgtatctgacagaattgaaatgcacaaaaacatctg |
678 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
55336962 |
atgatttatccaattcttcaatcaataactccaacaccgtgcaactctatgctatcttagattctgtatctgacagaattgaaatgcacaaaaacatcgg |
55336863 |
T |
|
| Q |
679 |
cgaacagcgtcaaaattggaacaac |
703 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
55336862 |
cgaacagcgtcaaaattggaacaac |
55336838 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 618 - 703
Target Start/End: Complemental strand, 55331485 - 55331400
Alignment:
| Q |
618 |
tgcaactctatgctatcttagattctgtatctgacagaattgaaatgcacaaaaacatctgcgaacagcgtcaaaattggaacaac |
703 |
Q |
| |
|
||||||||||||| || |||||||||||||| |||||||| ||||||||||| ||| || || ||||||| || |||||||||||| |
|
|
| T |
55331485 |
tgcaactctatgcaattttagattctgtatccgacagaatcgaaatgcacaacaacctcagccaacagcgacagaattggaacaac |
55331400 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 31
Target Start/End: Complemental strand, 55337503 - 55337473
Alignment:
| Q |
1 |
tataacatcttgaattattgtctattaattt |
31 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
55337503 |
tataacatcttgaattattgtctattaattt |
55337473 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University