View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9086_low_3 (Length: 615)
Name: NF9086_low_3
Description: NF9086
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9086_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 517; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 517; E-Value: 0
Query Start/End: Original strand, 9 - 594
Target Start/End: Complemental strand, 10751034 - 10750447
Alignment:
| Q |
9 |
gagaagcagagagagtatagtacaatgaaaacaatatataatgctaatgcatgatgagacttcaaattagaagcaacaataatgttagttctactcatgt |
108 |
Q |
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| T |
10751034 |
gagaatcaaagagagtatagtacaatgaaaacaatatataatgctaatgcatgatgagacttcaaattagaagcaacaataatgttagttctactcatgt |
10750935 |
T |
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| Q |
109 |
cccttaatgaacacccaaagtgtttgtataaaaaacaaaatatattttattaaacaaatgtgtaaaatgcctcaactaggcccatccttcatgatgtaaa |
208 |
Q |
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| T |
10750934 |
cccttaatgaacacccaaactatttgtataaaaaacaaaatatattttattaaacaaatgtgtaaaatgcctcaactaggcccatccttcatgatgtaaa |
10750835 |
T |
|
| Q |
209 |
ccttaattccctatctttattttgtttaaaacctaatccatccaaagcctccctcattcacaattgaaaacaca--aataaacaaaccactttctctccc |
306 |
Q |
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| T |
10750834 |
ccttaattccctatctttattttgtttaaaacctaatccatccaaagcctccctcattcacaattgaaaacacacaaataaacaaaccactttctctccc |
10750735 |
T |
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| Q |
307 |
acttatttggcatactaagaaacacacgacaataatgtcttaccataatggtatgcatcataacaacaatgttgttgaagatcatgaaactctgacatac |
406 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10750734 |
acttatttggcatgctaagaaacacacgacaataatgtcttaccataatggtatgcatcataacaacaatgttgttgaagatcatgaaactctgacatac |
10750635 |
T |
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| Q |
407 |
caaacctacccgtgtggatactatgttcaaagcccctccacagtctcccatgcaaatagcattgacaaacatagcaacatccaaaacgacgtcgaatcaa |
506 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
10750634 |
caaacctacccgtgtggatactatgttcaaagcccctccacagtctcccatgcaaatagcattgacaaacatagcaacatccaaaacgacaccgaatcaa |
10750535 |
T |
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| Q |
507 |
ctttccactccccgaatcgatctgagacccaccggacaaatccggcccacgaacaagaacccaaccgttttgccctttgccgctactc |
594 |
Q |
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||||||| |||||||| ||||| ||||||| | || |||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
10750534 |
ctttccattccccgaaccgatccgagacccttccgataaatccggtccacgaacaagaacccaaccgttttgccctttgccgctactc |
10750447 |
T |
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