View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9086_low_7 (Length: 380)
Name: NF9086_low_7
Description: NF9086
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9086_low_7 |
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| [»] scaffold1034 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 140; Significance: 3e-73; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 99 - 300
Target Start/End: Complemental strand, 12196626 - 12196428
Alignment:
| Q |
99 |
tattttctaggttctgtcgagcatccaaatctagaatctcttccaacagaattcttttcatatgcttgatttcaagatcgacccgaagatcacaagcttg |
198 |
Q |
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| T |
12196626 |
tattttctaggttct---gacaatccaaatctagaacctcttcctatagaattattttcatacgcttgatttcgagatcgacccgaagatcacatgcttg |
12196530 |
T |
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| Q |
199 |
taagctcctttcactcacaagtcacaacatataggtttttgagatatctagtatgccatcacagctgcaattgcaacacaatcgcaacctcaattccatt |
298 |
Q |
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| T |
12196529 |
taaacccctttcactcacaagtcacaacatataggtttttgagatatctagtatgccatcagagctgcaattgcaacacaatcgcaacctcaattccatt |
12196430 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 99 - 300
Target Start/End: Complemental strand, 12441054 - 12440856
Alignment:
| Q |
99 |
tattttctaggttctgtcgagcatccaaatctagaatctcttccaacagaattcttttcatatgcttgatttcaagatcgacccgaagatcacaagcttg |
198 |
Q |
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| T |
12441054 |
tattttctaggttct---gacaatccaaatctagaacctcttcctatagaattattttcatacgcttgatttcgagatcgacccgaagatcacatgcttg |
12440958 |
T |
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| Q |
199 |
taagctcctttcactcacaagtcacaacatataggtttttgagatatctagtatgccatcacagctgcaattgcaacacaatcgcaacctcaattccatt |
298 |
Q |
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| T |
12440957 |
taaacccctttcactcacaagtcacaacatataggtttttgagatatctagtatgccatcagagctgcaattgcaacacaatcgcaacctcaattccatt |
12440858 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 316 - 364
Target Start/End: Complemental strand, 12196277 - 12196229
Alignment:
| Q |
316 |
ataagaaccaatcatcaagtagatcaaaatgtaaatgaaggaactataa |
364 |
Q |
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| T |
12196277 |
ataagaaccaatcatcaagtagatcaaaatgtaaatgaaggaaccataa |
12196229 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 316 - 364
Target Start/End: Complemental strand, 12440705 - 12440657
Alignment:
| Q |
316 |
ataagaaccaatcatcaagtagatcaaaatgtaaatgaaggaactataa |
364 |
Q |
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| T |
12440705 |
ataagaaccaatcatcaagtagatcaaaatgtaaatgaaggaaccataa |
12440657 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 316 - 354
Target Start/End: Original strand, 4960813 - 4960851
Alignment:
| Q |
316 |
ataagaaccaatcatcaagtagatcaaaatgtaaatgaa |
354 |
Q |
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| T |
4960813 |
ataagaaccaaacatcaagtagatcaaaatgtaaatgaa |
4960851 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 67 - 102
Target Start/End: Complemental strand, 12196710 - 12196675
Alignment:
| Q |
67 |
aataaaccctaagaatccactagtcatatgtttatt |
102 |
Q |
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| T |
12196710 |
aataaaccctaagtatccactagtcatatgtttatt |
12196675 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 67 - 102
Target Start/End: Complemental strand, 12441138 - 12441103
Alignment:
| Q |
67 |
aataaaccctaagaatccactagtcatatgtttatt |
102 |
Q |
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| T |
12441138 |
aataaaccctaagtatccactagtcatatgtttatt |
12441103 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1034 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold1034
Description:
Target: scaffold1034; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 21 - 67
Target Start/End: Original strand, 1434 - 1480
Alignment:
| Q |
21 |
gaagaatacatattgtctgcaacaaaatttaatttcataagaataaa |
67 |
Q |
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| T |
1434 |
gaagaatacatattctctacaacaaaatctaatttcataagaataaa |
1480 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 316 - 364
Target Start/End: Original strand, 50249167 - 50249215
Alignment:
| Q |
316 |
ataagaaccaatcatcaagtagatcaaaatgtaaatgaaggaactataa |
364 |
Q |
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| T |
50249167 |
ataagaatcaatcaacaagtagatcaaattgtaaatgaaggaattataa |
50249215 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 316 - 364
Target Start/End: Complemental strand, 48885545 - 48885497
Alignment:
| Q |
316 |
ataagaaccaatcatcaagtagatcaaaatgtaaatgaaggaactataa |
364 |
Q |
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| T |
48885545 |
ataagaaccaatcaacaagtagatcaaaatgcaaattaatgaattataa |
48885497 |
T |
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