View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9087_high_1 (Length: 364)
Name: NF9087_high_1
Description: NF9087
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9087_high_1 |
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Alignment Details
Target: chr3 (Bit Score: 302; Significance: 1e-170; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 12 - 350
Target Start/End: Complemental strand, 7202573 - 7202231
Alignment:
| Q |
12 |
cagagaagatatgaaagaataagaaaaagggtgacagaaagtaacaaactttgatggagaagacaagaacctaacaaatgggttgttgggatgctacatt |
111 |
Q |
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| T |
7202573 |
cagacaagatatgaaagaataagaaaaagggtgacagaaagtaacaaactttgatggagaagacaagaacctaataaatgggttgttgggatgctacatt |
7202474 |
T |
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| Q |
112 |
ggcattgaagagcatgttgtgttggctatataatggttggataactgtggctgagagagtatgctgtcaataatgacacaaattggaaattgaaaggcca |
211 |
Q |
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| T |
7202473 |
ggcattgaagagcatgttgtgttggctatataatggttggataactgtggctgagagagtatgctgtcaataatgacacaaattggaaattgaaaggcca |
7202374 |
T |
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| Q |
212 |
caaatgtctctgacttaacgactgtccttttctttgtagaggaagtgtcaaatcttttcagatttacacatacaattcaaatcaaaatgaaagtgtctaa |
311 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| || |
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| T |
7202373 |
caaatgtctctgacttaatgactgtccttttctttgtagaggaagtgtcaaatcttgtcagatttacacatacaattcaaatcaaaatgaaagtgtccaa |
7202274 |
T |
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| Q |
312 |
c----ttaattattttggttaggggtgttcacactacatattg |
350 |
Q |
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| T |
7202273 |
ctgaatgaattattttggttaggggtgttcacactacatattg |
7202231 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 170; E-Value: 4e-91
Query Start/End: Original strand, 17 - 347
Target Start/End: Complemental strand, 7195339 - 7195021
Alignment:
| Q |
17 |
aagatatgaaagaataagaaaaagggtgacagaaagtaacaaactttgatggagaagacaagaacctaacaaatgggttgttgggatgctacattggcat |
116 |
Q |
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| T |
7195339 |
aagatatgaaagaataagaaaaagggtgacagaaagta-caaactttgatggagaagacaagaacctaa-aaatgagttgtgtggcagcttc-------- |
7195250 |
T |
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| Q |
117 |
tgaagagcatgttgtgttggctatataatggttggataactgtggctgagagagtatgctgtcaataatgacacaaattggaaattgaaaggccacaaat |
216 |
Q |
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| T |
7195249 |
-gaaaagtatgttgtgtttgctcaataatggttggataactgtggctgagagagtatgttgtaaataatgacacaaattggaaattgaaaggccacaaat |
7195151 |
T |
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| Q |
217 |
gtctctgacttaacgactgtccttttctttgt--agaggaagtgtcaaatcttttcagatttacacatacaattcaaatcaaaatgaaagtgtctaactt |
314 |
Q |
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||||||||| ||| ||||||| |||||||||| ||||||||||||||||| | ||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
7195150 |
gtctctgac-taatgactgtctttttctttgtagagaggaagtgtcaaatc-tatcagatttacacatagaattcaaatcaaaatgaaagtgtctaactt |
7195053 |
T |
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| Q |
315 |
aattattttggttaggggtgttcacactacata |
347 |
Q |
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| T |
7195052 |
aattattttagtt-gtggtgttcacaccacata |
7195021 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 22 - 226
Target Start/End: Complemental strand, 7208970 - 7208776
Alignment:
| Q |
22 |
atgaaagaataagaaaaagggtgacagaaagtaacaaactttgatggagaagacaagaacctaacaaatgggttgttgggatgctacattggcattgaag |
121 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||| ||||| || ||| | ||| |
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| T |
7208970 |
atgaaagaataagaaaaagggtgacagaaaataacaaactttgatggagaagacaagaacctaa-aaatgagttgtgtggcagcttc---------gaaa |
7208881 |
T |
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| Q |
122 |
agcatgttgtgttggctatataatggttggataactgtggctgagagagtatgctgtcaataatgacacaaattggaaattgaaaggccacaaatgtctc |
221 |
Q |
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|| |||||||||| ||| |||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||| ||||||||| |
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| T |
7208880 |
agtatgttgtgtttgctcaataatggttggataactgtggctgagagagtatgttgtaaataatgacacaaattggaaattgaaaggccataaatgtctc |
7208781 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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