View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9087_high_2 (Length: 357)
Name: NF9087_high_2
Description: NF9087
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9087_high_2 |
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Alignment Details
Target: chr3 (Bit Score: 281; Significance: 1e-157; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 24 - 304
Target Start/End: Original strand, 52583163 - 52583443
Alignment:
| Q |
24 |
attctagtctgtctattattatctctctcaaataagctcagttgagacaatccactattaattttaggtacatcctgaaacagttttcttttctcagcat |
123 |
Q |
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| T |
52583163 |
attctagtctgtctattattatctctctcaaataagctcagttgagacaatccactattaattttaggtacatcctgaaacagttttcttttctcagcat |
52583262 |
T |
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| Q |
124 |
ttatttgggacattatggcatctcttaagctacaaaaatgcctagacattgcttgaagtgccagagcagtgtaacactttgcagctcccaaacctgctat |
223 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52583263 |
ttatttgggacattatggcatctcttaagctacaaaaatgcctagacattgcttgaagtgccagagcagtgtaacactttgcagctcccaaacctgctat |
52583362 |
T |
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| Q |
224 |
catttcaaaagatgatactacttcttccatttgatggtagtacttctcatatctaccctcaacctgaaaattaagcacaac |
304 |
Q |
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| T |
52583363 |
catttcaaaagatgatactacttcttccatttgatggtagtacttctcatatctaccctcaacctgaaaattaagcacaac |
52583443 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 311 - 357
Target Start/End: Original strand, 52583650 - 52583696
Alignment:
| Q |
311 |
atagaaatagcttataccatgtctataaattctcaaagatagcttat |
357 |
Q |
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| T |
52583650 |
atagaaatagcttataccatgtctataaattctcaaagatagcttat |
52583696 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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