View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9087_low_11 (Length: 298)
Name: NF9087_low_11
Description: NF9087
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9087_low_11 |
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Alignment Details
Target: chr1 (Bit Score: 148; Significance: 4e-78; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 60 - 275
Target Start/End: Complemental strand, 8139395 - 8139189
Alignment:
| Q |
60 |
gagcagagacatcgttccaaaaacagtgatattcaagcatgcattcagtaacaaagactcaatnnnnnnnnnnnnnnnntcaacagatgcgcttcaaaaa |
159 |
Q |
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| T |
8139395 |
gagcagagacatcattccaaaaacagtgatattcaagcatgcattcagtaacaaagactaaa---------aaaaaaaatcaacagatgcgcttcaaaaa |
8139305 |
T |
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| Q |
160 |
cacagattcatcattcatggaaatgatcatgattgcagaaataaatgatcaagatttttaaataaatgagaaagatttttacataaatgattaagattta |
259 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8139304 |
cacagattcatcattcatagaaatgatcatgattgcagaaataaatgatcaagatttttaaataaatgagaaagatttttacataaatgattaagattta |
8139205 |
T |
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| Q |
260 |
tacttaatgatcaaga |
275 |
Q |
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|||||||||||||||| |
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| T |
8139204 |
tacttaatgatcaaga |
8139189 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 60 - 241
Target Start/End: Original strand, 7499529 - 7499701
Alignment:
| Q |
60 |
gagcagagacatcgttccaaaaacagtgatattcaagcatgcattcagtaacaaagactcaatnnnnnnnnnnnnnnnntcaacagatgcgcttcaaaaa |
159 |
Q |
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||||||| ||||| |||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||| ||||||||| |
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| T |
7499529 |
gagcagaaacatcattccaaaaacagtgatgttcaagcatgcattcagtaacaaagactcaa--------aaaaaaaaatcaacagatgagcttcaaaa- |
7499619 |
T |
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| Q |
160 |
cacagattcatcattcatggaaatgatcatgattgcagaaataaatgatcaagatttttaaataaatgagaaagatttttac |
241 |
Q |
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| T |
7499620 |
cacagattcatcattcatagaagtgatcatgattgcagaaataaatgataaagatttttagataaatgattaagatttttac |
7499701 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 159 - 275
Target Start/End: Original strand, 7502967 - 7503088
Alignment:
| Q |
159 |
acacagattcatcattcatggaaatgatcat--gattgcagaaataaatgatcaagatttttaaataaatgagaa---agatttttacataaatgattaa |
253 |
Q |
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| T |
7502967 |
acacagattcatcattcatagaagtgatcatatgattgcagaaataaatgatcaatatttttacataaatgattaatgatatttttacataaatgatcag |
7503066 |
T |
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| Q |
254 |
gatttatacttaatgatcaaga |
275 |
Q |
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||||| |||||||||||||||| |
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| T |
7503067 |
gatttttacttaatgatcaaga |
7503088 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 66 - 116
Target Start/End: Original strand, 7502878 - 7502928
Alignment:
| Q |
66 |
agacatcgttccaaaaacagtgatattcaagcatgcattcagtaacaaaga |
116 |
Q |
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| T |
7502878 |
agacatcattccaaaaacagtgatatccaagcatgcaatcagtaacaaaga |
7502928 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 160 - 201
Target Start/End: Original strand, 7503119 - 7503160
Alignment:
| Q |
160 |
cacagattcatcattcatggaaatgatcatgattgcagaaat |
201 |
Q |
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|||| ||||||||||||| ||| ||||||||||||||||||| |
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| T |
7503119 |
cacaaattcatcattcatagaagtgatcatgattgcagaaat |
7503160 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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