View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9087_low_5 (Length: 350)
Name: NF9087_low_5
Description: NF9087
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9087_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 287; Significance: 1e-161; HSPs: 8)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 16 - 345
Target Start/End: Complemental strand, 6030846 - 6030518
Alignment:
| Q |
16 |
caattgcagcaaggaatgttttgattccatgtcttcaatttgagattggttttt-aattgaagcaacaatgagggttgattcgtcaagacatttggcaga |
114 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| || |||||||||||||||| |
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| T |
6030846 |
caattgcagcaaggaatgttttgattccatgtcttcaatttgagattggttttttaattgaagcaacaatgagggttgat-cgccaagacatttggcaga |
6030748 |
T |
|
| Q |
115 |
ggtaacagagaatttgaaactgatgtaaatgcagtagtagcatagaaggcaggaaaacaatgaaagtaatgcaattttcattgctgtctactgtgagtct |
214 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6030747 |
ggtaacagagaatttgaaactgatgtaaatgcagtagtagcatagaaggaaggaaaacaatgaaagtaatgcaattttcattgctgtctactgtgagtct |
6030648 |
T |
|
| Q |
215 |
caaccagtgtagtcatattaatttactggttctttgtccttcacttttgaaaaatagtatagcagtaagacactagagaactttagcaaattatttataa |
314 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
6030647 |
caaccagtgtagtcatattaatttactggttctttgtccttcacttttgtaaaata-agtagcagtaagacactagagaactttagcaaattatttataa |
6030549 |
T |
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| Q |
315 |
ccagaagtcggtagaggtacaaacaccaaac |
345 |
Q |
| |
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||||||||||||||||||||||||||||||| |
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| T |
6030548 |
ccagaagtcggtagaggtacaaacaccaaac |
6030518 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 56 - 163
Target Start/End: Original strand, 3750049 - 3750155
Alignment:
| Q |
56 |
tgagattggtttttaattgaagcaacaatgagggttgattcgtcaagacatttggcagaggtaacagagaatttgaaactgatgtaaatgcagtagtagc |
155 |
Q |
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|||||||| |||||||||||||||||||||| |||||| | |||||||||||||||||||||||| ||| || |||||||| || |||| |||||||| |
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| T |
3750049 |
tgagattgttttttaattgaagcaacaatgattgttgatcc-tcaagacatttggcagaggtaacaaagatttggaaactgagatatatgctgtagtagc |
3750147 |
T |
|
| Q |
156 |
atagaagg |
163 |
Q |
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| |||||| |
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| T |
3750148 |
aaagaagg |
3750155 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 56 - 185
Target Start/End: Complemental strand, 5570227 - 5570099
Alignment:
| Q |
56 |
tgagattggtttttaattgaagcaacaatgagggttgattcgtcaagacatttggcagaggtaacagagaatttgaaactgatgtaaatgcagtagtagc |
155 |
Q |
| |
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||||||| |||||| ||| |||||||| || |||||| | |||||||||||||| |||| ||||| || || |||| ||| || ||||||||||||| |
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| T |
5570227 |
tgagattattttttagttggagcaacaacgattgttgatcc-tcaagacatttggctgaggcaacagtgatttggaaagtgagatatatgcagtagtagc |
5570129 |
T |
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| Q |
156 |
atagaaggcaggaaaacaatgaaagtaatg |
185 |
Q |
| |
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|||||||| ||||||||||||||| ||||| |
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| T |
5570128 |
atagaaggaaggaaaacaatgaaactaatg |
5570099 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 101 - 197
Target Start/End: Complemental strand, 5852072 - 5851976
Alignment:
| Q |
101 |
agacatttggcagaggtaacagagaatttgaaactgatgtaaatgcagtagtagcatagaaggcaggaaaacaatgaaagtaatgcaattttcattg |
197 |
Q |
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||||||||||| |||| ||| | || || ||||||||| ||||||||||||||||| |||| | |||||||||||| |||||||| |||| |||||| |
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| T |
5852072 |
agacatttggctgaggcaacggtgatttggaaactgatataaatgcagtagtagcagagaatgaaggaaaacaatggaagtaatgtaattctcattg |
5851976 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 98 - 197
Target Start/End: Original strand, 5554340 - 5554439
Alignment:
| Q |
98 |
tcaagacatttggcagaggtaacagagaatttgaaactgatgtaaatgcagtagtagcatagaaggcaggaaaacaatgaaagtaatgcaattttcattg |
197 |
Q |
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||||||||||||||||||| || ||||| || |||||| | || |||||||| ||||| ||||| ||||||||||||| | ||||| ||||||||||| |
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|
| T |
5554340 |
tcaagacatttggcagaggcaaaagagatttggaaactattatatatgcagtaatagcagcgaaggaaggaaaacaatgacactaatgtaattttcattg |
5554439 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 56 - 185
Target Start/End: Complemental strand, 5885418 - 5885290
Alignment:
| Q |
56 |
tgagattggtttttaattgaagcaacaatgagggttgattcgtcaagacatttggcagaggtaacagagaatttgaaactgatgtaaatgcagtagtagc |
155 |
Q |
| |
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|||||||| |||||||||| ||||||| ||| |||||| | ||||||||||||||||||| || |||| | |||| ||| ||||||||||||||| |
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| T |
5885418 |
tgagattgttttttaattggagcaacagtgattgttgatcc-tcaagacatttggcagaggcaagagagttctggaaagtgaaaaaaatgcagtagtagc |
5885320 |
T |
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| Q |
156 |
atagaaggcaggaaaacaatgaaagtaatg |
185 |
Q |
| |
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| | |||| ||||||| |||||||||||| |
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| T |
5885319 |
agataaggatggaaaacgatgaaagtaatg |
5885290 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 98 - 206
Target Start/End: Original strand, 5859202 - 5859310
Alignment:
| Q |
98 |
tcaagacatttggcagaggtaacagagaatttgaaactgatgtaaatgcagtagtagcatagaaggcaggaaaacaatgaaagtaatgcaattttcattg |
197 |
Q |
| |
|
||||||||||||||||||| | ||||| || |||| |||| || ||||||||| || | ||||| |||||||||||||||||| || |||| |||||| |
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| T |
5859202 |
tcaagacatttggcagaggctaaagagatttggaaagtgatatatatgcagtagcagaagagaagaaaggaaaacaatgaaagtattgtaattctcattg |
5859301 |
T |
|
| Q |
198 |
ctgtctact |
206 |
Q |
| |
|
||| |||| |
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|
| T |
5859302 |
ttgtttact |
5859310 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 56 - 116
Target Start/End: Original strand, 5560106 - 5560165
Alignment:
| Q |
56 |
tgagattggtttttaattgaagcaacaatgagggttgattcgtcaagacatttggcagagg |
116 |
Q |
| |
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|||||||| ||||||||||| |||||||||| ||||| || ||||||||||||| ||||| |
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| T |
5560106 |
tgagattgttttttaattgatgcaacaatgattgttga-tcctcaagacatttggtagagg |
5560165 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 56 - 190
Target Start/End: Original strand, 23268519 - 23268652
Alignment:
| Q |
56 |
tgagattggtttttaattgaagcaacaatgagggttgattcgtcaagacatttggcagaggtaacagagaatttgaaactgatgtaaatgcagtagtagc |
155 |
Q |
| |
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|||||||| |||||||||||||||||| | |||||| | ||||||||||| ||||||| || ||| || |||| || |||||||||||| || |
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| T |
23268519 |
tgagattgttttttaattgaagcaacagagttcgttgatcc-tcaagacatttagcagaggaaagagaagtttggaaaaagaaaaaaatgcagtagtggc |
23268617 |
T |
|
| Q |
156 |
atagaaggcaggaaaacaatgaaagtaatgcaatt |
190 |
Q |
| |
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| | |||| ||||||||||||||||||||| |||| |
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|
| T |
23268618 |
agaaaaggaaggaaaacaatgaaagtaatgtaatt |
23268652 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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