View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9088_low_10 (Length: 304)
Name: NF9088_low_10
Description: NF9088
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9088_low_10 |
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| [»] chr1 (4 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 300; Significance: 1e-169; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 300; E-Value: 1e-169
Query Start/End: Original strand, 1 - 304
Target Start/End: Original strand, 8777063 - 8777366
Alignment:
| Q |
1 |
aacaatgtgtcaaaagtaattttgggcttcatgaataaatgtaatttgctcatgaacttatgagttaatttgttattgaacttaataaataacattaatc |
100 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8777063 |
aacaatgtgtcaaaagtaattttgagcttcatgaataaatgtaatttgctcatgaacttatgagttaatttgttattgaacttaataaataacattaatc |
8777162 |
T |
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| Q |
101 |
acggattctttgatttctctgtagtcgagctagatcatgatacctattaatcacgggctcattctgtgaccgacaagtaatgatttctaatcatcactat |
200 |
Q |
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| T |
8777163 |
acggattctttgatttctctgtagtcgagctagatcatgatacctattaatcacgggctcattctgtgaccgacaagtaatgatttctaatcatcactat |
8777262 |
T |
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| Q |
201 |
atttgtgttagattttgctgagaacatcatttcagtctatattctaatgtgtggttggtttgtgcaagctttttggtagcttatacttcttttggatttt |
300 |
Q |
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| T |
8777263 |
atttgtgttagattttgctgagaacatcatttcagtctatattctaatgtgtggttggtttgtgcaagctttttggtagcttatacttcttttggatttt |
8777362 |
T |
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| Q |
301 |
caac |
304 |
Q |
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|||| |
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| T |
8777363 |
caac |
8777366 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 135 - 278
Target Start/End: Original strand, 8783244 - 8783389
Alignment:
| Q |
135 |
tcatgatacctattaatcacgggctcattctgtgaccgacaagtaatgatttctaatcatcactatatttgtgttagattttgctga--gaacatcattt |
232 |
Q |
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| T |
8783244 |
tcatgctaccttttaagcacggactcattctacgactgactagtactgattactaatcaccactatattttggttagattttgttgaaagaacgtcattt |
8783343 |
T |
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| Q |
233 |
cagtctatattctaatgtgtggttggtttgtgcaagctttttggta |
278 |
Q |
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| T |
8783344 |
ctgtctatattataatttgtggttagtttgtgcaagttttttggta |
8783389 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 29 - 282
Target Start/End: Original strand, 8789189 - 8789448
Alignment:
| Q |
29 |
tcatgaataaatgtaatttgctcatgaacttatgagttaatttgttatt-gaacttaataaataacattaatcacggat---tctttgatttctctgtag |
124 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||| ||||| || | ||||| || ||| ||| | || ||||| |||||| ||||| |
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| T |
8789189 |
tcatgaataaatgtaatttactcatgaacttatgagttaatttattatttgagcctaatatatgacaataaccgtatatcaatcttttatttctgtgtag |
8789288 |
T |
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| Q |
125 |
tcgagctagatcatgatacctattaatcacgggctcattctgtgaccgacaagtaatgatttctaatcatcactatatttgtgttagattttgctga--g |
222 |
Q |
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|| || || ||||| ||||| |||| | |||| ||||||| ||| ||| | || | |||| ||||||||| ||| || ||||||||||||||| | |
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| T |
8789289 |
tcaaggtatttcatggtaccttttaagtatgggcacattctgcgactgactaatactaatttttaatcatcattatgttgtggttagattttgctgaaag |
8789388 |
T |
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| Q |
223 |
aacatcatttcagtctatattctaatgtgtggttggtttgtgcaagctttttggtagctt |
282 |
Q |
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| T |
8789389 |
aacataatttctgtctatattctaatttgtggtctgtttgtgcaagtattttggtagctt |
8789448 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 32 - 87
Target Start/End: Original strand, 8783148 - 8783203
Alignment:
| Q |
32 |
tgaataaatgtaatttgctcatgaacttatgagttaatttgttattgaacttaata |
87 |
Q |
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| T |
8783148 |
tgaataaatgtagtttgctcatgaacttatgagttaatttattattgagcttaata |
8783203 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 75; Significance: 1e-34; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 253
Target Start/End: Complemental strand, 2540729 - 2540491
Alignment:
| Q |
1 |
aacaatgtgtcaaaagtaattttgggcttcatgaataaatgtaatttgctcatgaacttatgagttaatttgttattgaacttaataaataacattaatc |
100 |
Q |
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||||||||||||| |||||||| | || ||| |||||||||||||||||||||||||||||||||||||| ||||||||| |||| |||||| || |
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| T |
2540729 |
aacaatgtgtcaagagtaatttagagcctca--aataaatgtaatttgctcatgaacttatgagttaatttaatattgaact-aatatataacactaga- |
2540634 |
T |
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| Q |
101 |
acggattctttgatttctctgtagtcgagctagatcatgatacctattaatcacgggctcattctgtgaccgacaagtaatgatttctaatcatcactat |
200 |
Q |
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|||||||| ||||||||||||||| || ||| || ||||||| |||||||||||||||| ||| | || |||||||||||||||| ||| |
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| T |
2540633 |
--ggattctt-gatttctctgtagtcaag---------gatgtcttttaatcatgggctcattctgtgactgactactactgatttctaatcatcagtat |
2540546 |
T |
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| Q |
201 |
atttgtgttagattttgctg--agaacatcatttcagtctatattctaatgtgtg |
253 |
Q |
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|||| ||||||||||||| |||||||||||||||||||||||||||| |||| |
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| T |
2540545 |
gtttggtttagattttgctgaaagaacatcatttcagtctatattctaatttgtg |
2540491 |
T |
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