View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9088_low_16 (Length: 262)
Name: NF9088_low_16
Description: NF9088
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9088_low_16 |
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Alignment Details
Target: chr1 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 16 - 244
Target Start/End: Complemental strand, 26304211 - 26303984
Alignment:
| Q |
16 |
ttggtgttccttaattgtgctcatgtgcgataatttctcgattttccgtcgtatggaggttgcctccgtacccaagtttattttccctgctgctaccatg |
115 |
Q |
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| T |
26304211 |
ttggtgttccttaattgtgctcatgtgcgataatttctcgatttgccatcgtatggaggttgcctccgtacccaagtttattttccctgctgctaccatg |
26304112 |
T |
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| Q |
116 |
atactgttgctatcattagtcgtaagtgacatttgcattgcaaggttagtgaatgtgggtagagaatagtaaatgattattgggcaaactaccattttag |
215 |
Q |
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|||||||| ||||||| | |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26304111 |
atactgttactatcataaatcgtaa-tgacatttgcattgcaaggttagtgaatgtgggtagagaatagtaaatgattattgggcaaactaccattttag |
26304013 |
T |
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| Q |
216 |
tccctaaaagtgtaacgcgtcatcaattt |
244 |
Q |
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|||||||||||| |||||||||||||||| |
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| T |
26304012 |
tccctaaaagtgcaacgcgtcatcaattt |
26303984 |
T |
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