View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9088_low_17 (Length: 242)

Name: NF9088_low_17

Description: NF9088

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF9088_low_17

[»] chr4 (3 HSPs)

Target: chr4 (Bit Score: 48; Significance: 1e-18; HSPs: 3)

Name: chr4

Description:

Target: chr4; HSP #1

Raw Score: 48; E-Value: 1e-18

Query Start/End: Original strand, 183 - 242

Target Start/End: Original strand, 34484341 - 34484400

Alignment:

Q	183	cattgcacttaaatataagcttaacagtgactttaatttaaatttgagtcatttaattct	242	Q
		\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\| \|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	34484341	cattgcacttcaatataaacttaactgtgactttaatttaaatttgagtcatttaattct	34484400	T

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Target: chr4; HSP #2

Raw Score: 47; E-Value: 6e-18

Query Start/End: Original strand, 131 - 201

Target Start/End: Original strand, 34493035 - 34493105

Alignment:

Q	131	atttcttatactctttgttcattttgctatatatatgcatctctttgtacaccattgcacttaaatataag	201	Q
		\|\|\|\|\| \|\|\| \|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|
T	34493035	atttcatatgctttttgttcattttgccttatatatgcatctctttgtacaccattgcacttcaatataag	34493105	T

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Target: chr4; HSP #3

Raw Score: 38; E-Value: 0.000000000001

Query Start/End: Original strand, 86 - 160

Target Start/End: Complemental strand, 48205377 - 48205299

Alignment:

Q	86	aagctttgatccagttagctcatggaagttacatgtaa----gtttcagatttcttatactctttgttcattttgctat	160	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \| \|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|
T	48205377	aagctttgatccagctagctaatggaagttacatgtaattatgtttcagatttcttatgttttttgttcatttggctat	48205299	T

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