View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9088_low_2 (Length: 596)
Name: NF9088_low_2
Description: NF9088
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9088_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 324; Significance: 0; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 103 - 438
Target Start/End: Complemental strand, 51344081 - 51343746
Alignment:
| Q |
103 |
gatatggaaattcgtagagttgatggaaatactgtcttttgtttagctgctatttcaggaaacgtgaaaattgcaagaattttatgtgaaaagaatccag |
202 |
Q |
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| T |
51344081 |
gatatggaaattcgtagagttgatggaaatactgtcttttgtttagctgctatttcaggaaacgtgaaaattgcaagaattttatgtgaaaagaatccag |
51343982 |
T |
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| Q |
203 |
aattggtatggattaaaggtcatgaagaaaagttgccaattcaattggcatcctcagccgggcaacttcatatggtggagtttttgtttcaaaggattca |
302 |
Q |
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| T |
51343981 |
aattggtatggattaaaggtcatgaagaaaagttgccaattcaattggcatcctcagccgggcaacttcatatggtggagtttttgtttcaaaggattca |
51343882 |
T |
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| Q |
303 |
acaattcaacaacattaatttactaccatttcaagatattgtcaatctatttttcttgacccttaccaacaacatttacagtaagtagagtacaaatata |
402 |
Q |
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| T |
51343881 |
acaattcaacaacattaatttactaccatttcaagatattgtcaatctatttttcttgacccttaccaacaacatttacagtaagcagagtacaaatata |
51343782 |
T |
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| Q |
403 |
tatacttgtctacgatatcaactttttcacacattt |
438 |
Q |
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| T |
51343781 |
tatacttgtctacgatatcaacttttacgcacattt |
51343746 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 103 - 389
Target Start/End: Complemental strand, 51320074 - 51319791
Alignment:
| Q |
103 |
gatatggaaattcgtagagttgatggaaatactgtcttttgtttagctgctatttcaggaaacgtgaaaattgcaagaattttatgtgaaaagaatccag |
202 |
Q |
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| T |
51320074 |
gatatggaaattcgtagaaccgatggaaatactgtcttttgtttagctgctgtttcaggaaatgtgaaaattgcaagaattttatgtgaaaagaatccag |
51319975 |
T |
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| Q |
203 |
aattggtatggattaaaggtcatgaagaaaagttgccaattcaattggcatcctcagccgggcaacttcatatggtggagtttttgtttcaaaggattca |
302 |
Q |
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| T |
51319974 |
aattggtatggattaaaggccatgaagaacagttaccaattcaattggcttccttagctggacaacttcatatggtgaagtttttgtttcaaaggattga |
51319875 |
T |
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| Q |
303 |
acaattcaacaacattaatttactaccatttcaagatattgtcaatctatttttcttgacccttaccaacaacatttacagtaagta |
389 |
Q |
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| T |
51319874 |
acaagacaacaacattaatt---taccatttcaagatataatcaaactatttttcttgaccctgaccaacaacatttatggtaagta |
51319791 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 501 - 544
Target Start/End: Complemental strand, 51343728 - 51343685
Alignment:
| Q |
501 |
cacatatgctctatgaaacatggacacagccatgacatcgatac |
544 |
Q |
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| T |
51343728 |
cacatatgctctatgaaacatggacacagccatgacaccgatac |
51343685 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 124 - 291
Target Start/End: Complemental strand, 51314220 - 51314056
Alignment:
| Q |
124 |
gatggaaatactgtcttttgtttagctgctatttcaggaaacgtgaaaattgcaagaattttatgtgaaaagaatccagaattggtatggattaaaggtc |
223 |
Q |
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| T |
51314220 |
gatggcaataccgccttttgtatagctgcaatttcaggaaatgtgaaaattgctgtaatattatttggcaagaacccaagattgttgtggattagaggcc |
51314121 |
T |
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| Q |
224 |
atgaagaaaagttgccaattcaattggcatcctcagccgggcaacttcatatggtggagtttttgttt |
291 |
Q |
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| T |
51314120 |
aaaaagatatgttgccaattcatttggca---tcagctgggcatcttcatatggttaattttttgttt |
51314056 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 18 - 55
Target Start/End: Complemental strand, 51344166 - 51344129
Alignment:
| Q |
18 |
ggatggagacacagctcttcatattgcagtgaggatgg |
55 |
Q |
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| T |
51344166 |
ggatggagatacagctcttcatattgcagtgaggatgg |
51344129 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 55
Target Start/End: Complemental strand, 51320159 - 51320122
Alignment:
| Q |
18 |
ggatggagacacagctcttcatattgcagtgaggatgg |
55 |
Q |
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| T |
51320159 |
ggatggagacacagctctccatattgcagtgagaatgg |
51320122 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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