View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9088_low_21 (Length: 221)
Name: NF9088_low_21
Description: NF9088
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9088_low_21 |
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Alignment Details
Target: chr3 (Bit Score: 204; Significance: 1e-111; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 208
Target Start/End: Complemental strand, 42835966 - 42835759
Alignment:
| Q |
1 |
aatcaaaattaattagttccagcatggcatcaacaatgtccccattgtaagtcttgagagccttgacagccttgcttcttgacactcctgcctgtatcat |
100 |
Q |
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| T |
42835966 |
aatcaaaattaattagttccagcatggcatcaacaatgtccccattgtaagtcttgagagccttgacagccttgcttcttgacactcctgcctgtatcat |
42835867 |
T |
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| Q |
101 |
taccatctcaatattttgggcctgcatgccagtttcatcaacctcttcttcctcttcaggctgtgctccatcagctccagcaccttgttcttgagcagat |
200 |
Q |
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| T |
42835866 |
taccatctcaatattttgggcctgcatgccagtttcatcaacctcttcttcctcttcaggctgtgctccatcagctccagcaccttgttcttgagcagct |
42835767 |
T |
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| Q |
201 |
tgcgtttg |
208 |
Q |
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|||||||| |
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| T |
42835766 |
tgcgtttg |
42835759 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 15 - 193
Target Start/End: Complemental strand, 42503155 - 42502977
Alignment:
| Q |
15 |
agttccagcatggcatcaacaatgtccccattgtaagtcttgagagccttgacagccttgcttcttgacactcctgcctgtatcattaccatctcaatat |
114 |
Q |
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| T |
42503155 |
agttccatgatggcaccaacaatgtcaccattgtgagttttaagagccttgacagccttggcttttgacactcctgcttgtgtcattaccagctcaatgt |
42503056 |
T |
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| Q |
115 |
tttgggcctgcatgccagtttcatcaacctcttcttcctcttcaggctgtgctccatcagctccagcaccttgttcttg |
193 |
Q |
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| T |
42503055 |
cgtgggcctccacgccagtttcatcaacctcctcttcctcttcaggctgtgctccatcagctgcagcaccttgttcttg |
42502977 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 15 - 138
Target Start/End: Complemental strand, 42819916 - 42819793
Alignment:
| Q |
15 |
agttccagcatggcatcaacaatgtccccattgtaagtcttgagagccttgacagccttgcttcttgacactcctgcctgtatcattaccatctcaatat |
114 |
Q |
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||||||| |||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||| ||||||||| |||||||| |
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| T |
42819916 |
agttccatgatggcaccaacaatgtccccattgtgagtcttgagagccttgacagccttgcttcttgacacccctgcctgtgtcattaccagctcaatat |
42819817 |
T |
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| Q |
115 |
tttgggcctgcatgccagtttcat |
138 |
Q |
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| |||| || ||||||||||| |
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| T |
42819816 |
cgtcagcctccacgccagtttcat |
42819793 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 35 - 114
Target Start/End: Complemental strand, 42820026 - 42819946
Alignment:
| Q |
35 |
aatgtccccattgtaagtcttgagagccttgacagccttgc-ttcttgacactcctgcctgtatcattaccatctcaatat |
114 |
Q |
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||||||||| |||| |||||||||||||||||||||||||| || ||||||||||||| ||| ||||||||| |||||||| |
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| T |
42820026 |
aatgtccccgttgtgagtcttgagagccttgacagccttgcttttttgacactcctgcatgtgtcattaccagctcaatat |
42819946 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 24 - 160
Target Start/End: Complemental strand, 42499845 - 42499706
Alignment:
| Q |
24 |
atggcatcaacaatgtccccattgtaagtcttgagagccttgacagccttgcttcttgacactcctgcctgtatcattaccatctcaatattttgggcct |
123 |
Q |
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|||||| |||||||||||||||||| |||||||||||||||||| |||||||| | |||||||| || ||| |||| |||| ||||| | |||| || |
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| T |
42499845 |
atggcaccaacaatgtccccattgtgagtcttgagagccttgacggccttgctcttagacactcccgcttgtgtcataaccaaatcaatgtcatggggct |
42499746 |
T |
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| Q |
124 |
gcatgccagtttcatcaa---cctcttcttcctcttcagg |
160 |
Q |
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|| ||||||||||||| ||||||||||||| ||||| |
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| T |
42499745 |
ccacaccagtttcatcaatttcctcttcttcctcctcagg |
42499706 |
T |
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