View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9088_low_3 (Length: 445)
Name: NF9088_low_3
Description: NF9088
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9088_low_3 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 143; Significance: 6e-75; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 143; E-Value: 6e-75
Query Start/End: Original strand, 1 - 245
Target Start/End: Original strand, 54713213 - 54713461
Alignment:
| Q |
1 |
ttgttgaaatcggagctgggacgaaaggatggtcggagtttgcggcgatggcaatggatggtggtggggagagagaagagatccgtttttagagaagctg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
54713213 |
ttgttgaaatcggagctgggacgaaaggatggtcggagtttgcggcgatggcaatgtatggtggtggggagagagaagagatccgtttttagagaagatg |
54713312 |
T |
|
| Q |
101 |
agggttgggacttaa-----nnnnnnnnngtcttcttttatgagatggcac-tttcataagattattttata-tattttttagacatgtggaaggtgtac |
193 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||| | ||||||||||| ||||||||||||| |
|
|
| T |
54713313 |
agggttgggacttaattttttttttttttgtcttcttttatgagatggcacttttcataagattattttatatttttttttagacacgtggaaggtgtac |
54713412 |
T |
|
| Q |
194 |
aaagagtggtagccatataaggtggttgttcatgtataaccactcgaaaaat |
245 |
Q |
| |
|
||||||||||||||| ||| |||| |||||||||||| ||||| |||||| |
|
|
| T |
54713413 |
aaagagtggtagccacatagggtg---gttcatgtataatcactcaaaaaat |
54713461 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 310 - 431
Target Start/End: Original strand, 54713732 - 54713853
Alignment:
| Q |
310 |
tttgattggtagatatgatttaacacatcagatgttgactccaacatagtaaaattgaccattcatctagcatattagtattaatggaataaatttaata |
409 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54713732 |
tttgattggtagatatgatttaacacatcagatgttgactccaacatagtaaaattgaccattcatctagcatattagtattaatggaataaatttaata |
54713831 |
T |
|
| Q |
410 |
taacgatgaacccaaacaattg |
431 |
Q |
| |
|
||||||||||| |||||||||| |
|
|
| T |
54713832 |
taacgatgaacgcaaacaattg |
54713853 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 310 - 407
Target Start/End: Original strand, 54679876 - 54679973
Alignment:
| Q |
310 |
tttgattggtagatatgatttaacacatcagatgttgactccaacatagtaaaattgaccattcatctagcatattagtattaatggaataaatttaa |
407 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||| |||||||||||| ||||||||||| ||||||||||| |
|
|
| T |
54679876 |
tttgattggtagatatgatttaacacatcagatgttgagtacaacatagtaaaattgacccttcatctagcattgtagtattaatgtaataaatttaa |
54679973 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 241 - 283
Target Start/End: Original strand, 54713475 - 54713517
Alignment:
| Q |
241 |
aaaattgttgcaatatttataaactagatttcaacccttttga |
283 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54713475 |
aaaattgttgcaatatttataaactagatttcaacccttttga |
54713517 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 241 - 289
Target Start/End: Original strand, 54679839 - 54679886
Alignment:
| Q |
241 |
aaaattgttgcaatatttataaactagatttcaacccttttgattggta |
289 |
Q |
| |
|
|||||| ||||||| ||||||||||||||||||| |||||||||||||| |
|
|
| T |
54679839 |
aaaattattgcaatttttataaactagatttcaa-ccttttgattggta |
54679886 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 100; Significance: 3e-49; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 32971952 - 32971718
Alignment:
| Q |
1 |
ttgttgaaatcggagctgggacgaaaggatggtcggagtttgcggcgatggcaatggatggtggtggggagagagaagaga--tccgtttttagagaagc |
98 |
Q |
| |
|
||||||||||||||| |||| || | || |||||||||||||||||| ||||| ||||||| ||| ||||||||||||||| || |||||||||||||| |
|
|
| T |
32971952 |
ttgttgaaatcggagttggggcggaggggtggtcggagtttgcggcggtggcagtggatggcggttgggagagagaagagagatctgtttttagagaagc |
32971853 |
T |
|
| Q |
99 |
tgagggttgggacttaannnnnnnnngtcttcttttatgagatggcactttcataagattattttatatattttttagacatgtggaaggtgtacaaaga |
198 |
Q |
| |
|
||||||||||||||| ||||||||||||||| |||||||||||||||||||||| |||| ||| ||||||||||| |||||||||||||| |
|
|
| T |
32971852 |
a-agggttgggacttaatttttttttgtcttcttttatgagctggcactttcataagattattt-atatttttcttagacatgtgaaaggtgtacaaaga |
32971755 |
T |
|
| Q |
199 |
gtggtagccatataaggtggttgttcatgtataaccactc |
238 |
Q |
| |
|
|||||||||| ||| | || |||||||||||||||||| |
|
|
| T |
32971754 |
gtggtagccacataggatg---gttcatgtataaccactc |
32971718 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 92; Significance: 2e-44; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 41665011 - 41665254
Alignment:
| Q |
1 |
ttgttgaaatcggagctgggacgaaaggatggtcggagtttgcggcgatggcaatggatggtggtggggagagaga-agagatccgtttttagagaagct |
99 |
Q |
| |
|
|||||||||||||||||||| || | || ||||||||||||||||| ||||| ||||||| |||||||||||| | ||||||| |||||||||||||| |
|
|
| T |
41665011 |
ttgttgaaatcggagctggggcggaggggtggtcggagtttgcggcagtggcagtggatggcggtggggagagaaagagagatctgtttttagagaagcg |
41665110 |
T |
|
| Q |
100 |
gagggttgggacttaannnnnnnnn-------gtcttcttttatgagatggcactttcataagattattttatatatttt-ttagacatgtggaaggtgt |
191 |
Q |
| |
|
||||||| |||||||| ||||||||||||||| || |||||||||||||||||||||||| |||| ||||||||||||||||||| |
|
|
| T |
41665111 |
gagggttaggacttaattttttatttttttttgtcttcttttatgagctgacactttcataagattattttatatttttttttagacatgtggaaggtgt |
41665210 |
T |
|
| Q |
192 |
acaaagagtggtagccatataaggtggttgttcatgtataaccactc |
238 |
Q |
| |
|
||||||||||||||||| ||| | || |||||||||||||||||| |
|
|
| T |
41665211 |
acaaagagtggtagccacataggatg---gttcatgtataaccactc |
41665254 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University