View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9088_low_4 (Length: 412)
Name: NF9088_low_4
Description: NF9088
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9088_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 346; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 18 - 399
Target Start/End: Original strand, 2016457 - 2016837
Alignment:
| Q |
18 |
aggaattgcttctgaatgtatcactgtttgctgagcttactttgttgatcattttgttattcaattaaccatgtgtcatgtgcggttttttgttattctg |
117 |
Q |
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| T |
2016457 |
aggaattgcttctgaatgtatcactgtt-gctgagcttactttgttgatcattttgttattcaattaaccatgtggcatgtgcggttttttgttattctg |
2016555 |
T |
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| Q |
118 |
caagtgaaatcattttgtatgcaaataccttttaattaattaatcactagtttgagtttactattgtactccctatggacctttttagaagtgacaaatg |
217 |
Q |
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| T |
2016556 |
caagtgaaatcattttgtatgcaaataccttttaattaattaatcactaatttgagtttactattgtactccctctggacttttttataagtgacaaatg |
2016655 |
T |
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| Q |
218 |
agtcaataaaagttgatgtaattggttcttatatagaccaaatacatcaattttattgatctattcgtctcttataaaaatgaccggaggaggtattgtc |
317 |
Q |
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| T |
2016656 |
agtcgataaaagttgatgtaattggttcttatatagaccaaatacatcaattttattgatctattcgtctcttataaaaatgactggaggaggtattgtc |
2016755 |
T |
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| Q |
318 |
tgcattcttcattccttgtctgcgctttgtagtcttggtcatgttgtggcaattgagaaagtaagcatcattcaacacatct |
399 |
Q |
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| T |
2016756 |
tgcattcttcattccttgtctgcgctttgtagtcttggtcatgttgtggcaattgagaaagtaagcatcattcaacacatct |
2016837 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 184 - 307
Target Start/End: Complemental strand, 30443858 - 30443733
Alignment:
| Q |
184 |
tactccctatggacctttttagaagtgacaaatgagtcaataaaagttgatgtaattggttc-ttatatagaccaaatacatcaa-ttttattgatctat |
281 |
Q |
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| T |
30443858 |
tactccctccggtcctttttacaagagacaaattggtcaactaaagttgatgtatttggttcataatatagaccaaatacattaacttttgttgacccat |
30443759 |
T |
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| Q |
282 |
tcgtctcttataaaaatgaccggagg |
307 |
Q |
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| T |
30443758 |
ttgtttcttataaaaaagacgggagg |
30443733 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 197 - 267
Target Start/End: Complemental strand, 3938404 - 3938333
Alignment:
| Q |
197 |
cctttttagaagtgacaaatgagtcaataaaagttgatgtaattggttctta-tatagaccaaatacatcaa |
267 |
Q |
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| T |
3938404 |
cctttttataagagagaaatgagtcattaaaaattgatgtatttggttcataataaagaccaaatacatcaa |
3938333 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 184 - 245
Target Start/End: Complemental strand, 48051033 - 48050972
Alignment:
| Q |
184 |
tactccctatggacctttttagaagtgacaaatgagtcaataaaagttgatgtaattggttc |
245 |
Q |
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| T |
48051033 |
tactccctatggtcctttttataagagacaaattggtcaactaaagttgatgtatttggttc |
48050972 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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