View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9088_low_8 (Length: 351)
Name: NF9088_low_8
Description: NF9088
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9088_low_8 |
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Alignment Details
Target: chr5 (Bit Score: 214; Significance: 1e-117; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 45 - 303
Target Start/End: Complemental strand, 34021706 - 34021448
Alignment:
| Q |
45 |
atcaccaccatgcctgatgcaaaaggcaagaatatatatacttagatcatataagtgttgggaataaagatctaatgttannnnnnngttaataaaagtt |
144 |
Q |
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| T |
34021706 |
atcatcaccatgcctgatgcaaaaggcaagaatatatatacttagatcatataagtgttgggaataaagatataatgttatttttttgttaataaaagtt |
34021607 |
T |
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| Q |
145 |
tagggtatgggactcaaatcaataacttttcgaacattatactccactcgatcaacaaatttaaagatcatcatatattgctccttaattcttgttcatg |
244 |
Q |
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| T |
34021606 |
tagggtatgggactcaaatcaataacttttcgaacattagactccactcgatcaacaaatttaaagatcatcttatattgctccttaattcttgttcatg |
34021507 |
T |
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| Q |
245 |
gaatttaagaacataattggttacacaaaattcaacagttattaatttcccatataaat |
303 |
Q |
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| T |
34021506 |
gaatttaaaaacataattggttacataaaattcaacagttattaatttcccatataaat |
34021448 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 301 - 335
Target Start/End: Complemental strand, 34021436 - 34021402
Alignment:
| Q |
301 |
aatgagttaaaatatcaagtaatattcgataattc |
335 |
Q |
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| T |
34021436 |
aatgagttaaaatatcaagtaatattcgataattc |
34021402 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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