View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9089_high_2 (Length: 296)

Name: NF9089_high_2
Description: NF9089
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9089_high_2
NF9089_high_2
[»] chr7 (14 HSPs)
chr7 (9-271)||(15653357-15653619)
chr7 (56-271)||(46623966-46624181)
chr7 (26-215)||(12378436-12378625)
chr7 (9-159)||(13440279-13440429)
chr7 (9-84)||(45943077-45943152)
chr7 (9-76)||(45992802-45992869)
chr7 (26-84)||(43105554-43105612)
chr7 (9-76)||(27941341-27941408)
chr7 (9-76)||(33796214-33796281)
chr7 (149-217)||(27941200-27941268)
chr7 (25-83)||(23887326-23887384)
chr7 (25-83)||(23898502-23898560)
chr7 (25-83)||(33821359-33821417)
chr7 (16-72)||(27601773-27601829)
[»] chr5 (8 HSPs)
chr5 (9-265)||(10486578-10486834)
chr5 (9-244)||(34481173-34481408)
chr5 (9-217)||(587742-587950)
chr5 (26-76)||(11574541-11574591)
chr5 (9-56)||(3727266-3727313)
chr5 (26-56)||(23923092-23923122)
chr5 (9-55)||(27324991-27325037)
chr5 (29-82)||(41590342-41590395)
[»] chr1 (9 HSPs)
chr1 (11-271)||(36306012-36306272)
chr1 (34-265)||(21528416-21528647)
chr1 (9-226)||(37530792-37531009)
chr1 (9-101)||(48265540-48265632)
chr1 (9-159)||(32353061-32353211)
chr1 (9-159)||(48073195-48073345)
chr1 (9-84)||(30970447-30970522)
chr1 (9-76)||(25504840-25504907)
chr1 (26-56)||(39477392-39477422)
[»] chr3 (12 HSPs)
chr3 (9-265)||(49731590-49731846)
chr3 (9-271)||(30166996-30167258)
chr3 (9-140)||(9379323-9379454)
chr3 (9-159)||(2813264-2813414)
chr3 (9-159)||(29309634-29309784)
chr3 (9-159)||(6176242-6176392)
chr3 (9-84)||(23601999-23602074)
chr3 (9-76)||(25872955-25873022)
chr3 (9-83)||(27924906-27924980)
chr3 (26-76)||(30435296-30435346)
chr3 (9-82)||(54439954-54440027)
chr3 (16-72)||(28308709-28308765)
[»] chr8 (4 HSPs)
chr8 (9-271)||(7452578-7452840)
chr8 (9-159)||(16420774-16420924)
chr8 (9-61)||(19384572-19384624)
chr8 (9-76)||(4987912-4987979)
[»] chr4 (16 HSPs)
chr4 (9-265)||(47541151-47541406)
chr4 (9-265)||(3129640-3129893)
chr4 (9-250)||(8654746-8654987)
chr4 (9-196)||(7662966-7663153)
chr4 (9-159)||(2631624-2631774)
chr4 (9-215)||(20675248-20675454)
chr4 (9-159)||(55298846-55298996)
chr4 (9-159)||(23873240-23873390)
chr4 (9-159)||(8486745-8486895)
chr4 (9-76)||(19647935-19648002)
chr4 (9-76)||(29553587-29553654)
chr4 (9-76)||(23657621-23657688)
chr4 (9-76)||(49926113-49926180)
chr4 (9-83)||(13158613-13158687)
chr4 (26-76)||(19114679-19114729)
chr4 (149-217)||(29553446-29553514)
[»] chr2 (13 HSPs)
chr2 (9-271)||(45421745-45422008)
chr2 (9-159)||(43627725-43627875)
chr2 (9-159)||(13550350-13550500)
chr2 (13-159)||(26894376-26894522)
chr2 (13-159)||(26899815-26899961)
chr2 (9-108)||(31085452-31085551)
chr2 (9-84)||(33548098-33548173)
chr2 (9-61)||(22052853-22052905)
chr2 (26-76)||(15017919-15017969)
chr2 (9-55)||(22725302-22725348)
chr2 (17-52)||(28598172-28598207)
chr2 (95-159)||(13550889-13550953)
chr2 (20-76)||(26679072-26679128)
[»] scaffold0029 (1 HSPs)
scaffold0029 (9-250)||(134527-134768)
[»] scaffold0002 (2 HSPs)
scaffold0002 (9-250)||(312354-312595)
scaffold0002 (9-250)||(327808-328049)
[»] scaffold0418 (1 HSPs)
scaffold0418 (9-196)||(7901-8088)
[»] scaffold0131 (1 HSPs)
scaffold0131 (134-268)||(4204-4338)
[»] chr6 (11 HSPs)
chr6 (9-159)||(23347231-23347381)
chr6 (9-159)||(25318080-25318230)
chr6 (9-159)||(26205574-26205724)
chr6 (9-159)||(15674051-15674205)
chr6 (9-64)||(33630323-33630378)
chr6 (9-76)||(19255866-19255933)
chr6 (9-76)||(33640144-33640211)
chr6 (9-53)||(1683266-1683310)
chr6 (9-76)||(503379-503446)
chr6 (26-76)||(5085873-5085923)
chr6 (20-76)||(25036029-25036085)
[»] scaffold0112 (1 HSPs)
scaffold0112 (9-67)||(15506-15564)


Alignment Details
Target: chr7 (Bit Score: 203; Significance: 1e-111; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 9 - 271
Target Start/End: Complemental strand, 15653619 - 15653357
Alignment:
Q  9 acatcaagaagtaaagtcctacactccgctaacatctcctcctcccactgccacaatctacgcctccatctccacataaccccctgctgctccgaatcaa 108  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| | |||||||||||||||| ||||||    
T  15653619 acatcaagaagtaaagccctacactccgctaacatctcctcctcccactgccacaatctacgcctccacctccagaaaaccccctgctgctccaaatcaa 15653520  T
Q  109 cagagaacaagtctgccacagacatgaacttattctccgttaactcaaacagtctacgaaaacgaacacagaaaggaaagtcccctaaccacctatcaaa 208  Q
    |||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||  |||| |||||||  ||||||||||||||||||||    
T  15653519 cagagaacaagtctgccatagacatgagcttattctccgttaactcaaacagtctacgaaaacgggcacaaaaaggaacatcccctaaccacctatcaaa 15653420  T
Q  209 ccaaaacaacgtatcagctccgtctccaaccctcctagccacgtggccaacaaaccaaccaca 271  Q
    ||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||| |||||    
T  15653419 ccaaaacaacgtatcagatccatctccaaccctcctagccacgtggccaacaaaccacccaca 15653357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 144; E-Value: 9e-76
Query Start/End: Original strand, 56 - 271
Target Start/End: Original strand, 46623966 - 46624181
Alignment:
Q  56 ctgccacaatctacgcctccatctccacataaccccctgctgctccgaatcaacagagaacaagtctgccacagacatgaacttattctccgttaactca 155  Q
    ||||||||| ||||||||||| ||||| | ||  |||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  46623966 ctgccacaaactacgcctccacctccaaaaaaatccctgctgctccaaatcaacagagaacaagtctgccacagacatgagcttattctccgttaactca 46624065  T
Q  156 aacagtctacgaaaacgaacacagaaaggaaagtcccctaaccacctatcaaaccaaaacaacgtatcagctccgtctccaaccctcctagccacgtggc 255  Q
    |||||||| |||||||| |||||||||||||  |||||||||||||||||||||||||||||||||||||  || |||| |||||||||||||||||| |    
T  46624066 aacagtctgcgaaaacggacacagaaaggaacatcccctaaccacctatcaaaccaaaacaacgtatcagaaccatctctaaccctcctagccacgtgac 46624165  T
Q  256 caacaaaccaaccaca 271  Q
    |||||||||| |||||    
T  46624166 caacaaaccacccaca 46624181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 26 - 215
Target Start/End: Complemental strand, 12378625 - 12378436
Alignment:
Q  26 cctacactccgctaacatctcctcctcccactgccacaatctacgcctccatctccacataaccccctgctgctccgaatcaacagagaacaagtctgcc 125  Q
    ||||||||||||||||||||||||||||||||||||||| || |||||||  ||| ||| | |||||  | ||| ||| | |||| ||||||| | ||||    
T  12378625 cctacactccgctaacatctcctcctcccactgccacaacctgcgcctccgcctcaacaaatccccccaccgcttcgacttaacaaagaacaaatttgcc 12378526  T
Q  126 acagacatgaacttattctccgttaactcaaacagtctacgaaaacgaacacagaaaggaaagtcccctaaccacctatcaaaccaaaac 215  Q
    |||||||||| |||||||||| ||||||||||||||||| || | ||  |||||| |||||  ||||||| |||||||||| ||||||||    
T  12378525 acagacatgatcttattctccattaactcaaacagtctatgataccgctcacagagaggaacatcccctatccacctatcataccaaaac 12378436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 9 - 159
Target Start/End: Original strand, 13440279 - 13440429
Alignment:
Q  9 acatcaagaagtaaagtcctacactccgctaacatctcctcctcccactgccacaatctacgcctccatctccacataaccccctgctgctccgaatcaa 108  Q
    |||||||||||||||| || ||||||  ||| || |||||||||||||| ||| || ||||| ||||| |||||||   |||||  | ||||||||||||    
T  13440279 acatcaagaagtaaagcccaacactcatctagcaactcctcctcccactaccataaactacgtctccacctccacacctccccccaccgctccgaatcaa 13440378  T
Q  109 cagagaacaagtctgccacagacatgaacttattctccgttaactcaaaca 159  Q
    |||||| |||||| || || |||||  |||||||||| |||||||||||||    
T  13440379 cagagagcaagtcggcaacggacatagacttattctctgttaactcaaaca 13440429  T

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Target: chr7; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 9 - 84
Target Start/End: Original strand, 45943077 - 45943152
Alignment:
Q  9 acatcaagaagtaaagtcctacactccgctaacatctcctcctcccactgccacaatctacgcctccatctccaca 84  Q
    |||||||||||||||| |||||||||| ||| || |||||||||||||||||| |||||||  ||||| |||||||    
T  45943077 acatcaagaagtaaagccctacactcctctagcaactcctcctcccactgccataatctacatctccacctccaca 45943152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 9 - 76
Target Start/End: Original strand, 45992802 - 45992869
Alignment:
Q  9 acatcaagaagtaaagtcctacactccgctaacatctcctcctcccactgccacaatctacgcctcca 76  Q
    |||||||| || |||| |||||||||| ||||||||||||||||||||  ||||||||| ||||||||    
T  45992802 acatcaagcagaaaagccctacactccactaacatctcctcctcccacgcccacaatctccgcctcca 45992869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 26 - 84
Target Start/End: Original strand, 43105554 - 43105612
Alignment:
Q  26 cctacactccgctaacatctcctcctcccactgccacaatctacgcctccatctccaca 84  Q
    ||||||||| |||||||||||||||||||| |||||||| || |||||||| |||||||    
T  43105554 cctacactctgctaacatctcctcctcccattgccacaacctgcgcctccacctccaca 43105612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 9 - 76
Target Start/End: Complemental strand, 27941408 - 27941341
Alignment:
Q  9 acatcaagaagtaaagtcctacactccgctaacatctcctcctcccactgccacaatctacgcctcca 76  Q
    |||||||  ||||||||| |||||||| |||||| |||||||||||||  ||||||||| ||||||||    
T  27941408 acatcaaacagtaaagtcttacactcctctaacaactcctcctcccacgcccacaatctccgcctcca 27941341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 9 - 76
Target Start/End: Complemental strand, 33796281 - 33796214
Alignment:
Q  9 acatcaagaagtaaagtcctacactccgctaacatctcctcctcccactgccacaatctacgcctcca 76  Q
    |||||||  |||||||||||||||||| |||||||||| |||||||||  ||||| ||| ||||||||    
T  33796281 acatcaaacagtaaagtcctacactcctctaacatctcttcctcccacgcccacagtctccgcctcca 33796214  T

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Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 149 - 217
Target Start/End: Complemental strand, 27941268 - 27941200
Alignment:
Q  149 taactcaaacagtctacgaaaacgaacacagaaaggaaagtcccctaaccacctatcaaaccaaaacaa 217  Q
    ||||||||||||||||||||| |||||||| |||||||   |||| ||||| |  ||||||||||||||    
T  27941268 taactcaaacagtctacgaaagcgaacacacaaaggaactgcccccaaccaacggtcaaaccaaaacaa 27941200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 25 - 83
Target Start/End: Original strand, 23887326 - 23887384
Alignment:
Q  25 tcctacactccgctaacatctcctcctcccactgccacaatctacgcctccatctccac 83  Q
    |||||||||||||||||||||| |||||||||  ||||| ||| | |||||| ||||||    
T  23887326 tcctacactccgctaacatctcttcctcccacacccacagtcttctcctccacctccac 23887384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 25 - 83
Target Start/End: Original strand, 23898502 - 23898560
Alignment:
Q  25 tcctacactccgctaacatctcctcctcccactgccacaatctacgcctccatctccac 83  Q
    |||||||||||||||||||||| |||||||||  ||||| ||| | |||||| ||||||    
T  23898502 tcctacactccgctaacatctcttcctcccacacccacagtcttctcctccacctccac 23898560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 25 - 83
Target Start/End: Complemental strand, 33821417 - 33821359
Alignment:
Q  25 tcctacactccgctaacatctcctcctcccactgccacaatctacgcctccatctccac 83  Q
    ||||||||||||||| |||||| |||||||||  ||||||||| | |||||| ||||||    
T  33821417 tcctacactccgctagcatctcttcctcccacacccacaatcttctcctccacctccac 33821359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 16 - 72
Target Start/End: Complemental strand, 27601829 - 27601773
Alignment:
Q  16 gaagtaaagtcctacactccgctaacatctcctcctcccactgccacaatctacgcc 72  Q
    |||||||| || |||||||| ||||| ||||||||||||||  |||||| |||||||    
T  27601829 gaagtaaaatcttacactcccctaacttctcctcctcccacgcccacaacctacgcc 27601773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 185; Significance: 1e-100; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 9 - 265
Target Start/End: Complemental strand, 10486834 - 10486578
Alignment:
Q  9 acatcaagaagtaaagtcctacactccgctaacatctcctcctcccactgccacaatctacgcctccatctccacataaccccctgctgctccgaatcaa 108  Q
    |||||||||||||||| |||||||||||||||||| |||||||||||||||||||| ||||| ||||| ||||||||||||||| |||||||||||||||    
T  10486834 acatcaagaagtaaagccctacactccgctaacatgtcctcctcccactgccacaacctacgtctccacctccacataaccccccgctgctccgaatcaa 10486735  T
Q  109 cagagaacaagtctgccacagacatgaacttattctccgttaactcaaacagtctacgaaaacgaacacagaaaggaaagtcccctaaccacctatcaaa 208  Q
    ||||||||||||||||||||||||||||||||||||  |||||||||||||| ||||||||||| ||||| |||||||  ||||||||||||||||| ||    
T  10486734 cagagaacaagtctgccacagacatgaacttattctatgttaactcaaacagcctacgaaaacggacacaaaaaggaagatcccctaaccacctatccaa 10486635  T
Q  209 ccaaaacaacgtatcagctccgtctccaaccctcctagccacgtggccaacaaacca 265  Q
    ||||||||||||||||||||| |||||||||||||||||||| ||  ||||||||||    
T  10486634 ccaaaacaacgtatcagctccatctccaaccctcctagccacatgatcaacaaacca 10486578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 9 - 244
Target Start/End: Original strand, 34481173 - 34481408
Alignment:
Q  9 acatcaagaagtaaagtcctacactccgctaacatctcctcctcccactgccacaatctacgcctccatctccacataaccccctgctgctccgaatcaa 108  Q
    |||||||||||||||| |||||||||| ||| || | |||||||||||||||| || ||||| ||||| |||||||   |||||  | ||||||||||||    
T  34481173 acatcaagaagtaaagccctacactcctctagcaacccctcctcccactgccataacctacgtctccacctccacacttccccccaccgctccgaatcaa 34481272  T
Q  109 cagagaacaagtctgccacagacatgaacttattctccgttaactcaaacagtctacgaaaacgaacacagaaaggaaagtcccctaaccacctatcaaa 208  Q
    |||||| ||| | ||||||||||||  |||||||||| |||||||||||||  | || ||| |  ||||| | |||||  |||||||||||||||||  |    
T  34481273 cagagagcaaatatgccacagacatagacttattctctgttaactcaaacaaccgactaaacctcacacaaagaggaacctcccctaaccacctatcgga 34481372  T
Q  209 ccaaaacaacgtatcagctccgtctccaaccctcct 244  Q
    ||||||| | |||||||| || || ||||| |||||    
T  34481373 ccaaaacgaagtatcagccccatcaccaactctcct 34481408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 9 - 217
Target Start/End: Original strand, 587742 - 587950
Alignment:
Q  9 acatcaagaagtaaagtcctacactccgctaacatctcctcctcccactgccacaatctacgcctccatctccacataaccccctgctgctccgaatcaa 108  Q
    |||||||||||||||| |||||||||| ||||||| ||||||||||||  ||| |  ||||||||||| ||||| | | |||||   |||||||||   |    
T  587742 acatcaagaagtaaagccctacactcctctaacatatcctcctcccacatccatagcctacgcctccacctccagacatccccccaatgctccgaactca 587841  T
Q  109 cagagaacaagtctgccacagacatgaacttattctccgttaactcaaacagtctacgaaaacgaacacagaaaggaaagtcccctaaccacctatcaaa 208  Q
    |||||||||||| |||||  |  |||  ||||||||| ||||| |||||||||| |||||| ||| |||| | || ||   | || |||||||||||| |    
T  587842 cagagaacaagtttgccattgtgatggtcttattctcagttaattcaaacagtcgacgaaaccgatcacacagagaaatccctcccaaccacctatcata 587941  T
Q  209 ccaaaacaa 217  Q
    |||||||||    
T  587942 ccaaaacaa 587950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 26 - 76
Target Start/End: Complemental strand, 11574591 - 11574541
Alignment:
Q  26 cctacactccgctaacatctcctcctcccactgccacaatctacgcctcca 76  Q
    |||||||||| ||||||||||||||||||||  ||||||||| ||||||||    
T  11574591 cctacactcctctaacatctcctcctcccacgcccacaatctccgcctcca 11574541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 9 - 56
Target Start/End: Complemental strand, 3727313 - 3727266
Alignment:
Q  9 acatcaagaagtaaagtcctacactccgctaacatctcctcctcccac 56  Q
    |||||||| || ||||||||||||||| |||||||||| |||||||||    
T  3727313 acatcaagcagaaaagtcctacactcctctaacatctcttcctcccac 3727266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 26 - 56
Target Start/End: Original strand, 23923092 - 23923122
Alignment:
Q  26 cctacactccgctaacatctcctcctcccac 56  Q
    |||||||||||||||||||||||||||||||    
T  23923092 cctacactccgctaacatctcctcctcccac 23923122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 9 - 55
Target Start/End: Original strand, 27324991 - 27325037
Alignment:
Q  9 acatcaagaagtaaagtcctacactccgctaacatctcctcctccca 55  Q
    |||||||||||||| ||||||||||||||||||| | | ||||||||    
T  27324991 acatcaagaagtaatgtcctacactccgctaacaacacttcctccca 27325037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 29 - 82
Target Start/End: Original strand, 41590342 - 41590395
Alignment:
Q  29 acactccgctaacatctcctcctcccactgccacaatctacgcctccatctcca 82  Q
    ||||||| | ||||||||||||||||||  ||||||||| || |||||||||||    
T  41590342 acactcccccaacatctcctcctcccacacccacaatctccgtctccatctcca 41590395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 185; Significance: 1e-100; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 11 - 271
Target Start/End: Original strand, 36306012 - 36306272
Alignment:
Q  11 atcaagaagtaaagtcctacactccgctaacatctcctcctcccactgccacaatctacgcctccatctccacataaccccctgctgctccgaatcaaca 110  Q
    |||||||||||||| |||||||||| ||||||||||||||| |||||||||||||||||||||||| ||||| | |||||||||||||||| ||||||||    
T  36306012 atcaagaagtaaagccctacactcctctaacatctcctccttccactgccacaatctacgcctccacctccaaacaaccccctgctgctccaaatcaaca 36306111  T
Q  111 gagaacaagtctgccacagacatgaacttattctccgttaactcaaacagtctacgaaaacgaacacagaaaggaaagtcccctaaccacctatcaaacc 210  Q
    |||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||| | |||||||||||||  |||||||||||||||||| |||    
T  36306112 gagaacaagtctgccacatacatgagcttattctccgttaactcaaacagtctacgaaaaaggacacagaaaggaacatcccctaaccacctatcatacc 36306211  T
Q  211 aaaacaacgtatcagctccgtctccaaccctcctagccacgtggccaacaaaccaaccaca 271  Q
    |||||||||||||||  || |||||||||||||||||||||||||| |||||||| |||||    
T  36306212 aaaacaacgtatcagaaccatctccaaccctcctagccacgtggccgacaaaccacccaca 36306272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 34 - 265
Target Start/End: Original strand, 21528416 - 21528647
Alignment:
Q  34 ccgctaacatctcctcctcccactgccacaatctacgcctccatctccacataaccccctgctgctccgaatcaacagagaacaagtctgccacagacat 133  Q
    |||||||||| ||||||||||||| ||| || ||||| ||||| |||||||||||||||   ||||||||||||||||||||||||||| | ||||||||    
T  21528416 ccgctaacatgtcctcctcccactaccataacctacgtctccacctccacataaccccccattgctccgaatcaacagagaacaagtctccaacagacat 21528515  T
Q  134 gaacttattctccgttaactcaaacagtctacgaaaacgaacacagaaaggaaagtcccctaaccacctatcaaaccaaaacaacgtatcagctccgtct 233  Q
    |||||||||||| |||||||||||||| ||||||||||| ||||| |||||||  ||||||||||||||||| ||||||||||||||||||||| | |||    
T  21528516 gaacttattctctgttaactcaaacagcctacgaaaacggacacaaaaaggaacatcccctaaccacctatccaaccaaaacaacgtatcagcttcatct 21528615  T
Q  234 ccaaccctcctagccacgtggccaacaaacca 265  Q
    ||||||||||||||||| ||  ||||||||||    
T  21528616 ccaaccctcctagccacatgatcaacaaacca 21528647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 9 - 226
Target Start/End: Original strand, 37530792 - 37531009
Alignment:
Q  9 acatcaagaagtaaagtcctacactccgctaacatctcctcctcccactgccacaatctacgcctccatctccacataaccccctgctgctccgaatcaa 108  Q
    |||||||||||||||| |||||||||| ||| || | |||||||||||||||| || ||||| ||||| |||||||   |||||  | ||||||||||||    
T  37530792 acatcaagaagtaaagccctacactcctctagcaacccctcctcccactgccataacctacgtctccacctccacacttccccccaccgctccgaatcaa 37530891  T
Q  109 cagagaacaagtctgccacagacatgaacttattctccgttaactcaaacagtctacgaaaacgaacacagaaaggaaagtcccctaaccacctatcaaa 208  Q
    |||||| ||||||||||||| ||||   ||||||||| |||||||||||||  | || ||  |  ||||| | |||||  |||||||||||||||||| |    
T  37530892 cagagagcaagtctgccacatacatagtcttattctctgttaactcaaacaaccgactaagtctcacacaaagaggaacctcccctaaccacctatcaga 37530991  T
Q  209 ccaaaacaacgtatcagc 226  Q
    ||||||| | ||||||||    
T  37530992 ccaaaacgaagtatcagc 37531009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 9 - 101
Target Start/End: Complemental strand, 48265632 - 48265540
Alignment:
Q  9 acatcaagaagtaaagtcctacactccgctaacatctcctcctcccactgccacaatctacgcctccatctccacataaccccctgctgctcc 101  Q
    |||||||||||||||| ||||||||||||||||| ||||||||||||||||||||| ||||| ||||| ||||||||||||||| || |||||    
T  48265632 acatcaagaagtaaagccctacactccgctaacaactcctcctcccactgccacaacctacgtctccacctccacataaccccccgccgctcc 48265540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 9 - 159
Target Start/End: Complemental strand, 32353211 - 32353061
Alignment:
Q  9 acatcaagaagtaaagtcctacactccgctaacatctcctcctcccactgccacaatctacgcctccatctccacataaccccctgctgctccgaatcaa 108  Q
    |||||||||||||||| |||||||||  ||| || |||||||| ||||||||| || ||||| ||||| |||||||   |||||  | ||||||||||||    
T  32353211 acatcaagaagtaaagccctacactcatctagcaactcctccttccactgccataacctacgtctccacctccacacctccccccaccgctccgaatcaa 32353112  T
Q  109 cagagaacaagtctgccacagacatgaacttattctccgttaactcaaaca 159  Q
    |||||| |||||| ||||| |||||  |||||||||| |||||||||||||    
T  32353111 cagagagcaagtcggccacggacatagacttattctctgttaactcaaaca 32353061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 9 - 159
Target Start/End: Complemental strand, 48073345 - 48073195
Alignment:
Q  9 acatcaagaagtaaagtcctacactccgctaacatctcctcctcccactgccacaatctacgcctccatctccacataaccccctgctgctccgaatcaa 108  Q
    |||||||||||||||| || ||||||  ||| || |||||||||||||| ||| || ||||| ||||| |||||||   |||||  | ||||||||||||    
T  48073345 acatcaagaagtaaagccccacactcatctagcaactcctcctcccactcccataacctacgtctccacctccacacctccccccaccgctccgaatcaa 48073246  T
Q  109 cagagaacaagtctgccacagacatgaacttattctccgttaactcaaaca 159  Q
    |||||| |||||| || || |||||  |||||||||| |||||||||||||    
T  48073245 cagagagcaagtcggcaacggacatagacttattctctgttaactcaaaca 48073195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 9 - 84
Target Start/End: Complemental strand, 30970522 - 30970447
Alignment:
Q  9 acatcaagaagtaaagtcctacactccgctaacatctcctcctcccactgccacaatctacgcctccatctccaca 84  Q
    |||||||||||||| | |||||||||||| | ||||||||||||||||  |||||||||||||||||| |||||||    
T  30970522 acatcaagaagtaaggccctacactccgccaccatctcctcctcccacgcccacaatctacgcctccacctccaca 30970447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 9 - 76
Target Start/End: Complemental strand, 25504907 - 25504840
Alignment:
Q  9 acatcaagaagtaaagtcctacactccgctaacatctcctcctcccactgccacaatctacgcctcca 76  Q
    |||||||| || |||| |||||||||| ||||||||||||||||||||  ||||||||| ||||||||    
T  25504907 acatcaagcagaaaagccctacactccactaacatctcctcctcccacgcccacaatctccgcctcca 25504840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 26 - 56
Target Start/End: Original strand, 39477392 - 39477422
Alignment:
Q  26 cctacactccgctaacatctcctcctcccac 56  Q
    |||||||||||||||||||||||||||||||    
T  39477392 cctacactccgctaacatctcctcctcccac 39477422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 177; Significance: 2e-95; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 9 - 265
Target Start/End: Complemental strand, 49731846 - 49731590
Alignment:
Q  9 acatcaagaagtaaagtcctacactccgctaacatctcctcctcccactgccacaatctacgcctccatctccacataaccccctgctgctccgaatcaa 108  Q
    |||||||||||||||| |||||||||||| |||| ||||||||||||||||||||| ||||| ||||| ||||||||||||||| ||||||||| |||||    
T  49731846 acatcaagaagtaaagccctacactccgccaacaactcctcctcccactgccacaaactacgtctccacctccacataaccccccgctgctccggatcaa 49731747  T
Q  109 cagagaacaagtctgccacagacatgaacttattctccgttaactcaaacagtctacgaaaacgaacacagaaaggaaagtcccctaaccacctatcaaa 208  Q
    |||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||| ||||| |||||||  ||||||||||||||||||||    
T  49731746 cagagaacaagtctgccacatacatgaacttattctctgttaactcaaacagtctacgaaaacggacacaaaaaggaacatcccctaaccacctatcaaa 49731647  T
Q  209 ccaaaacaacgtatcagctccgtctccaaccctcctagccacgtggccaacaaacca 265  Q
    ||||||||| || |||||||| |||||||||||||||||||| ||  ||||||||||    
T  49731646 ccaaaacaatgtgtcagctccatctccaaccctcctagccacatgatcaacaaacca 49731590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 9 - 271
Target Start/End: Complemental strand, 30167258 - 30166996
Alignment:
Q  9 acatcaagaagtaaagtcctacactccgctaacatctcctcctcccactgccacaatctacgcctccatctccacataaccccctgctgctccgaatcaa 108  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| | ||| ||||||||||||  |||||    
T  30167258 acatcaagaagtaaagtcctacactccgctaacatctcctcctcccactgccacaatctacgcctccacctccaaaaaacaccctgctgctccagatcaa 30167159  T
Q  109 cagagaacaagtctgccacagacatgaacttattctccgttaactcaaacagtctacgaaaacgaacacagaaaggaaagtcccctaaccacctatcaaa 208  Q
    |||||||||||||||||||| |||||| ||||||||| ||||||||||||| |||||||||||| |||||||| ||||  ||||||||||||||||| ||    
T  30167158 cagagaacaagtctgccacaaacatgagcttattctctgttaactcaaacaatctacgaaaacggacacagaacggaacatcccctaaccacctatccaa 30167059  T
Q  209 ccaaaacaacgtatcagctccgtctccaaccctcctagccacgtggccaacaaaccaaccaca 271  Q
    |||||||||||||||||  || || |||||||||||||||||||| ||| ||||||| |||||    
T  30167058 ccaaaacaacgtatcagaaccatcaccaaccctcctagccacgtgaccaccaaaccacccaca 30166996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 9 - 140
Target Start/End: Original strand, 9379323 - 9379454
Alignment:
Q  9 acatcaagaagtaaagtcctacactccgctaacatctcctcctcccactgccacaatctacgcctccatctccacataaccccctgctgctccgaatcaa 108  Q
    |||||||| ||||| | ||||||||||||||||||| |||||||||||||||| || || |||||||| ||||||| | |||||  |||||| |||||||    
T  9379323 acatcaagtagtaatgccctacactccgctaacatcccctcctcccactgccataacctgcgcctccacctccacaaatccccccactgctctgaatcaa 9379422  T
Q  109 cagagaacaagtctgccacagacatgaactta 140  Q
    || ||||||||| ||||||| ||||| |||||    
T  9379423 catagaacaagtttgccacatacatggactta 9379454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 9 - 159
Target Start/End: Complemental strand, 2813414 - 2813264
Alignment:
Q  9 acatcaagaagtaaagtcctacactccgctaacatctcctcctcccactgccacaatctacgcctccatctccacataaccccctgctgctccgaatcaa 108  Q
    |||||||||||||||| |||||||||  ||| || |||||||||||||||||| || ||||| ||||| |||||||   |||||  | ||||||||||||    
T  2813414 acatcaagaagtaaagccctacactcatctagcaactcctcctcccactgccataacctacgtctccacctccacacctccccccaccgctccgaatcaa 2813315  T
Q  109 cagagaacaagtctgccacagacatgaacttattctccgttaactcaaaca 159  Q
    |||||| |||||| || || |||||  |||||||||| |||||||||||||    
T  2813314 cagagagcaagtcggcaacggacatagacttattctctgttaactcaaaca 2813264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 9 - 159
Target Start/End: Original strand, 29309634 - 29309784
Alignment:
Q  9 acatcaagaagtaaagtcctacactccgctaacatctcctcctcccactgccacaatctacgcctccatctccacataaccccctgctgctccgaatcaa 108  Q
    |||||||||||||| | |||||||||  ||| || |||||||||||||||||| || ||||| ||||| |||||||   |||||  | |||||||||| |    
T  29309634 acatcaagaagtaacgccctacactcatctagcaactcctcctcccactgccataacctacgtctccacctccacacctccccccaccgctccgaatcga 29309733  T
Q  109 cagagaacaagtctgccacagacatgaacttattctccgttaactcaaaca 159  Q
    |||||| |||||| ||||| |||||  |||||||||| |||||||||||||    
T  29309734 cagagagcaagtcggccacggacatagacttattctctgttaactcaaaca 29309784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 9 - 159
Target Start/End: Complemental strand, 6176392 - 6176242
Alignment:
Q  9 acatcaagaagtaaagtcctacactccgctaacatctcctcctcccactgccacaatctacgcctccatctccacataaccccctgctgctccgaatcaa 108  Q
    |||||||||||||||| |||||||||  ||| || |||||||||||||||| | || ||||| ||||| |||||||   |||||  | ||||||||||||    
T  6176392 acatcaagaagtaaagccctacactcatctagcaactcctcctcccactgctataacctacgtctccacctccacacctccccccaccgctccgaatcaa 6176293  T
Q  109 cagagaacaagtctgccacagacatgaacttattctccgttaactcaaaca 159  Q
    |||||| |||||| || || |||||  ||||||||||  ||||||||||||    
T  6176292 cagagagcaagtcggcgacggacatagacttattctctattaactcaaaca 6176242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 9 - 84
Target Start/End: Original strand, 23601999 - 23602074
Alignment:
Q  9 acatcaagaagtaaagtcctacactccgctaacatctcctcctcccactgccacaatctacgcctccatctccaca 84  Q
    |||||||||||||||| |||||||||  ||| || |||||||||||||||||| || ||| | ||||| |||||||    
T  23601999 acatcaagaagtaaagccctacactcatctagcaactcctcctcccactgccataacctatgtctccacctccaca 23602074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 9 - 76
Target Start/End: Complemental strand, 25873022 - 25872955
Alignment:
Q  9 acatcaagaagtaaagtcctacactccgctaacatctcctcctcccactgccacaatctacgcctcca 76  Q
    ||||||| |||||||| |||||||||| ||| || | |||||||||||||||| || ||||| |||||    
T  25873022 acatcaaaaagtaaagccctacactcctctagcaacccctcctcccactgccataacctacgtctcca 25872955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 9 - 83
Target Start/End: Complemental strand, 27924980 - 27924906
Alignment:
Q  9 acatcaagaagtaaagtcctacactccgctaacatctcctcctcccactgccacaatctacgcctccatctccac 83  Q
    |||||||| | ||||||| |||||||| |||||| ||||||||||||   |||||||||  |||||||| |||||    
T  27924980 acatcaagcaataaagtcttacactcctctaacacctcctcctcccaagcccacaatctctgcctccatttccac 27924906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 26 - 76
Target Start/End: Original strand, 30435296 - 30435346
Alignment:
Q  26 cctacactccgctaacatctcctcctcccactgccacaatctacgcctcca 76  Q
    |||||||||| |||||| |||||||||||||| |||||| || ||||||||    
T  30435296 cctacactcccctaacagctcctcctcccactcccacaacctccgcctcca 30435346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 9 - 82
Target Start/End: Complemental strand, 54440027 - 54439954
Alignment:
Q  9 acatcaagaagtaaagtcctacactccgctaacatctcctcctcccactgccacaatctacgcctccatctcca 82  Q
    |||||||| ||||||| |||||||||| |||| | ||| || ||||||  ||||| |||||||||||| |||||    
T  54440027 acatcaagcagtaaagccctacactcctctaataactcttcttcccacgcccacagtctacgcctccaactcca 54439954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 16 - 72
Target Start/End: Original strand, 28308709 - 28308765
Alignment:
Q  16 gaagtaaagtcctacactccgctaacatctcctcctcccactgccacaatctacgcc 72  Q
    |||||||| | ||||||||| |||| |||||||||||||||  |||||| |||||||    
T  28308709 gaagtaaaattctacactcccctaagatctcctcctcccacgcccacaacctacgcc 28308765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 175; Significance: 3e-94; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 9 - 271
Target Start/End: Original strand, 7452578 - 7452840
Alignment:
Q  9 acatcaagaagtaaagtcctacactccgctaacatctcctcctcccactgccacaatctacgcctccatctccacataaccccctgctgctccgaatcaa 108  Q
    |||||||||||||||| |||||||||| |||| | | ||||||||||||||||||||||||||||||| ||||| | |||||||||||||||| ||||||    
T  7452578 acatcaagaagtaaagccctacactcctctaataacacctcctcccactgccacaatctacgcctccacctccaaacaaccccctgctgctccaaatcaa 7452677  T
Q  109 cagagaacaagtctgccacagacatgaacttattctccgttaactcaaacagtctacgaaaacgaacacagaaaggaaagtcccctaaccacctatcaaa 208  Q
    ||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||| |||||||||||||  |||||||||||||||||| |    
T  7452678 cagagaacaagtctgccacagacataagcttattctccgttaactcaaacagtctacgaaaacggacacagaaaggaacatcccctaaccacctatcata 7452777  T
Q  209 ccaaaacaacgtatcagctccgtctccaaccctcctagccacgtggccaacaaaccaaccaca 271  Q
    |||||||||||||||||  || |||||||||||||||||||||||| | | |||||| |||||    
T  7452778 ccaaaacaacgtatcagaaccatctccaaccctcctagccacgtgggcgagaaaccacccaca 7452840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 9 - 159
Target Start/End: Complemental strand, 16420924 - 16420774
Alignment:
Q  9 acatcaagaagtaaagtcctacactccgctaacatctcctcctcccactgccacaatctacgcctccatctccacataaccccctgctgctccgaatcaa 108  Q
    ||||| |||||||||| ||||| |||  ||| || |||||||||||||||||| || ||||| ||||| |||||||   |||||  | ||||||||||||    
T  16420924 acatcgagaagtaaagccctacgctcatctagcaactcctcctcccactgccataacctacgtctccacctccacacctccccccaccgctccgaatcaa 16420825  T
Q  109 cagagaacaagtctgccacagacatgaacttattctccgttaactcaaaca 159  Q
    |||||| |||||| |||||||||||  |||||||||| |||||||||||||    
T  16420824 cagagagcaagtcggccacagacatagacttattctctgttaactcaaaca 16420774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 9 - 61
Target Start/End: Complemental strand, 19384624 - 19384572
Alignment:
Q  9 acatcaagaagtaaagtcctacactccgctaacatctcctcctcccactgcca 61  Q
    |||||||||||||||| |||||||||| |||||||||||||||||||||||||    
T  19384624 acatcaagaagtaaagccctacactccactaacatctcctcctcccactgcca 19384572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 9 - 76
Target Start/End: Complemental strand, 4987979 - 4987912
Alignment:
Q  9 acatcaagaagtaaagtcctacactccgctaacatctcctcctcccactgccacaatctacgcctcca 76  Q
    |||||||| || |||| |||||||||| ||||||||||||||||||||  |||||||||  |||||||    
T  4987979 acatcaagcagaaaagccctacactccactaacatctcctcctcccacgcccacaatctctgcctcca 4987912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 169; Significance: 1e-90; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 9 - 265
Target Start/End: Original strand, 47541151 - 47541406
Alignment:
Q  9 acatcaagaagtaaagtcctacactccgctaacatctcctcctcccactgccacaatctacgcctccatctccacataaccccctgctgctccgaatcaa 108  Q
    |||||||||||||||| |||||||||||||||||||||||||| |||||||||||| | ||| ||||| ||||||||||| ||| |||||||||||||||    
T  47541151 acatcaagaagtaaagccctacactccgctaacatctcctccttccactgccacaaacgacgtctccacctccacataactcccggctgctccgaatcaa 47541250  T
Q  109 cagagaacaagtctgccacagacatgaacttattctccgttaactcaaacagtctacgaaaacgaacacagaaaggaaagtcccctaaccacctatcaaa 208  Q
    |||| |||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||| |||||||  ||||||||||||||||||||    
T  47541251 cagaaaacaagtctgccacagacatgaacttattctctgttaactcaaacagtctacaaaaacgaacacaaaaaggaacatcccctaaccacctatcaaa 47541350  T
Q  209 ccaaaacaacgtatcagctccgtctccaaccctcctagccacgtggccaacaaacca 265  Q
    |||||||||||||||| |||| ||||||| ||| |||||||| ||  ||||||||||    
T  47541351 ccaaaacaacgtatcatctccatctccaa-ccttctagccacatgatcaacaaacca 47541406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 9 - 265
Target Start/End: Complemental strand, 3129893 - 3129640
Alignment:
Q  9 acatcaagaagtaaagtcctacactccgctaacatctcctcctcccactgccacaatctacgcctccatctccacataaccccctgctgctccgaatcaa 108  Q
    |||||||||||||||| |||||||||||||||||||||||||   ||||||||||| | ||| ||||| |||||| |||||||  |||||||||||||||    
T  3129893 acatcaagaagtaaagccctacactccgctaacatctcctcc---cactgccacaaacaacgtctccacctccacgtaacccctagctgctccgaatcaa 3129797  T
Q  109 cagagaacaagtctgccacagacatgaacttattctccgttaactcaaacagtctacgaaaacgaacacagaaaggaaagtcccctaaccacctatcaaa 208  Q
     |||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||| ||||| |||||||  ||||||||||||||| ||||    
T  3129796 tagagaacaagtctgccacagacatgaacttattctctgttaactcaaacagtctactaaaacggacacaaaaaggaacatcccctaaccacctaccaaa 3129697  T
Q  209 ccaaaacaacgtatcagctccgtctccaaccctcctagccacgtggccaacaaacca 265  Q
    ||||||||| ||||||||||| |||||||||||||||||||| ||  ||||||||||    
T  3129696 ccaaaacaatgtatcagctccatctccaaccctcctagccacatgatcaacaaacca 3129640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 9 - 250
Target Start/End: Complemental strand, 8654987 - 8654746
Alignment:
Q  9 acatcaagaagtaaagtcctacactccgctaacatctcctcctcccactgccacaatctacgcctccatctccacataaccccctgctgctccgaatcaa 108  Q
    |||||||||||||||| |||||||||||||||||  |||||||||||||||||||| ||||| ||||| ||||||| |||||||  ||||||||||||||    
T  8654987 acatcaagaagtaaagccctacactccgctaacaagtcctcctcccactgccacaacctacgtctccacctccacaaaaccccccactgctccgaatcaa 8654888  T
Q  109 cagagaacaagtctgccacagacatgaacttattctccgttaactcaaacagtctacgaaaacgaacacagaaaggaaagtcccctaaccacctatcaaa 208  Q
    |||| |||||||||||||||||||| ||||||||||| |||||||||||||| ||||| ||||| ||||| |||||||  ||||||||||||||||| ||    
T  8654887 cagataacaagtctgccacagacataaacttattctctgttaactcaaacagcctacggaaacggacacaaaaaggaacatcccctaaccacctatccaa 8654788  T
Q  209 ccaaaacaacgtatcagctccgtctccaaccctcctagccac 250  Q
    |||||||||||||| |||||| ||||||||||||||||||||    
T  8654787 ccaaaacaacgtattagctccatctccaaccctcctagccac 8654746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 9 - 196
Target Start/End: Complemental strand, 7663153 - 7662966
Alignment:
Q  9 acatcaagaagtaaagtcctacactccgctaacatctcctcctcccactgccacaatctacgcctccatctccacataaccccctgctgctccgaatcaa 108  Q
    |||||||||||||||| | |||||||| |||||||||||||||||||||||||||||||||||||||| ||||| | || ||||||||||||| ||||||    
T  7663153 acatcaagaagtaaagccatacactccactaacatctcctcctcccactgccacaatctacgcctccacctccaaaaaaacccctgctgctccaaatcaa 7663054  T
Q  109 cagagaacaagtctgccacagacatgaacttattctccgttaactcaaacagtctacgaaaacgaacacagaaaggaaagtcccctaa 196  Q
    |||||||||||||||||| |||||||| |||||||||  |||||||||||| |||||||||||| |||||||| ||||  ||||||||    
T  7663053 cagagaacaagtctgccatagacatgagcttattctctattaactcaaacaatctacgaaaacggacacagaacggaacatcccctaa 7662966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 9 - 159
Target Start/End: Original strand, 2631624 - 2631774
Alignment:
Q  9 acatcaagaagtaaagtcctacactccgctaacatctcctcctcccactgccacaatctacgcctccatctccacataaccccctgctgctccgaatcaa 108  Q
    |||||||||||||||| |||||||||  ||| || |||||||||||||||||| || ||||| ||||| |||||||   |||||  | ||||||||||||    
T  2631624 acatcaagaagtaaagccctacactcatctagcaactcctcctcccactgccataacctacgtctccacctccacacctccccccaccgctccgaatcaa 2631723  T
Q  109 cagagaacaagtctgccacagacatgaacttattctccgttaactcaaaca 159  Q
    |||||| |||||| |||||||||||  |||||||||| |||||||||||||    
T  2631724 cagagagcaagtcggccacagacatagacttattctctgttaactcaaaca 2631774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 9 - 215
Target Start/End: Original strand, 20675248 - 20675454
Alignment:
Q  9 acatcaagaagtaaagtcctacactccgctaacatctcctcctcccactgccacaatctacgcctccatctccacataaccccctgctgctccgaatcaa 108  Q
    ||||||||||||||||||||||||||  | | || |||||||||||||||||| || ||||| ||||| |||||||   |||||  | ||||||||||||    
T  20675248 acatcaagaagtaaagtcctacactcatcaagcaactcctcctcccactgccataacctacgtctccacctccacacctccccccaccgctccgaatcaa 20675347  T
Q  109 cagagaacaagtctgccacagacatgaacttattctccgttaactcaaacagtctacgaaaacgaacacagaaaggaaagtcccctaaccacctatcaaa 208  Q
    || ||| |||||| ||||| || ||  |||||||||| |||||||||||||  |  | ||| || ||||| | ||||   |||||||||||||||||| |    
T  20675348 caaagagcaagtcggccacggatatagacttattctctgttaactcaaacaaccgcctaaaccgcacacaaagaggagcctcccctaaccacctatcaga 20675447  T
Q  209 ccaaaac 215  Q
    |||||||    
T  20675448 ccaaaac 20675454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 9 - 159
Target Start/End: Original strand, 55298846 - 55298996
Alignment:
Q  9 acatcaagaagtaaagtcctacactccgctaacatctcctcctcccactgccacaatctacgcctccatctccacataaccccctgctgctccgaatcaa 108  Q
    |||||||||||||||| |||||||||  ||| || |||||||||||||||||| || ||||| ||||| |||||||   |||||  | ||||||||||||    
T  55298846 acatcaagaagtaaagccctacactcatctagcaactcctcctcccactgccataaactacgtctccacctccacacctccccccaccgctccgaatcaa 55298945  T
Q  109 cagagaacaagtctgccacagacatgaacttattctccgttaactcaaaca 159  Q
    |||||| |||||| || || |||||  |||||||||| |||||||||||||    
T  55298946 cagagagcaagtcggcaacggacatagacttattctctgttaactcaaaca 55298996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 9 - 159
Target Start/End: Complemental strand, 23873390 - 23873240
Alignment:
Q  9 acatcaagaagtaaagtcctacactccgctaacatctcctcctcccactgccacaatctacgcctccatctccacataaccccctgctgctccgaatcaa 108  Q
    |||||||||||||||| |||||||||  ||| || ||||||||||||||||||  | ||||| ||||| |||||||   |||||  | ||||||||||||    
T  23873390 acatcaagaagtaaagccctacactcatctagcaactcctcctcccactgccattacctacgtctccacctccacacctccccccaccgctccgaatcaa 23873291  T
Q  109 cagagaacaagtctgccacagacatgaacttattctccgttaactcaaaca 159  Q
    |||||| |||||| || || |||||  |||||||||| |||||||||||||    
T  23873290 cagagagcaagtcggcaacggacatagacttattctctgttaactcaaaca 23873240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 9 - 159
Target Start/End: Complemental strand, 8486895 - 8486745
Alignment:
Q  9 acatcaagaagtaaagtcctacactccgctaacatctcctcctcccactgccacaatctacgcctccatctccacataaccccctgctgctccgaatcaa 108  Q
    |||||||||||||||| ||||||||   ||| || ||||| |||||||||||| || ||||| ||||| |||||||   |||||  | | ||||||||||    
T  8486895 acatcaagaagtaaagccctacactaatctagcaactccttctcccactgccataacctacgtctccacctccacacctccccccaccggtccgaatcaa 8486796  T
Q  109 cagagaacaagtctgccacagacatgaacttattctccgttaactcaaaca 159  Q
    |||||| ||||||  | || |||||  |||||||||| |||||||||||||    
T  8486795 cagagagcaagtcgacgacggacatagacttattctctgttaactcaaaca 8486745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 9 - 76
Target Start/End: Original strand, 19647935 - 19648002
Alignment:
Q  9 acatcaagaagtaaagtcctacactccgctaacatctcctcctcccactgccacaatctacgcctcca 76  Q
    |||||||| || |||| |||||||||| ||||||||||||||||||||  ||||||||| ||||||||    
T  19647935 acatcaagcagaaaagccctacactccactaacatctcctcctcccacgcccacaatctccgcctcca 19648002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 9 - 76
Target Start/End: Complemental strand, 29553654 - 29553587
Alignment:
Q  9 acatcaagaagtaaagtcctacactccgctaacatctcctcctcccactgccacaatctacgcctcca 76  Q
    |||||||  |||||||||||||||||| |||||| |||||||||||||  ||||||||| ||||||||    
T  29553654 acatcaaacagtaaagtcctacactcctctaacaactcctcctcccacgcccacaatctccgcctcca 29553587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 9 - 76
Target Start/End: Original strand, 23657621 - 23657688
Alignment:
Q  9 acatcaagaagtaaagtcctacactccgctaacatctcctcctcccactgccacaatctacgcctcca 76  Q
    |||||||| || | ||||||||||||| |||||| |||||||||||||  ||||||||| ||||||||    
T  23657621 acatcaagcagaagagtcctacactcctctaacaactcctcctcccacgcccacaatctccgcctcca 23657688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 9 - 76
Target Start/End: Complemental strand, 49926180 - 49926113
Alignment:
Q  9 acatcaagaagtaaagtcctacactccgctaacatctcctcctcccactgccacaatctacgcctcca 76  Q
    |||||||| || |||| |||||||||| |||||| |||||||||||||  ||||||||| ||||||||    
T  49926180 acatcaagcagaaaagccctacactccactaacaactcctcctcccacgcccacaatctccgcctcca 49926113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 9 - 83
Target Start/End: Complemental strand, 13158687 - 13158613
Alignment:
Q  9 acatcaagaagtaaagtcctacactccgctaacatctcctcctcccactgccacaatctacgcctccatctccac 83  Q
    ||||||||||| |||||||| |||| | |||||||||| | |||||||  |||||| ||||||||||| ||||||    
T  13158687 acatcaagaagcaaagtcctccacttctctaacatctcttactcccacgcccacaacctacgcctccacctccac 13158613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 26 - 76
Target Start/End: Original strand, 19114679 - 19114729
Alignment:
Q  26 cctacactccgctaacatctcctcctcccactgccacaatctacgcctcca 76  Q
    |||||||||| |||| |||||||||||||||  ||||||||| ||||||||    
T  19114679 cctacactcctctaatatctcctcctcccacacccacaatctccgcctcca 19114729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 149 - 217
Target Start/End: Complemental strand, 29553514 - 29553446
Alignment:
Q  149 taactcaaacagtctacgaaaacgaacacagaaaggaaagtcccctaaccacctatcaaaccaaaacaa 217  Q
    ||||||||||||||||||||| | |||||| |||||||   |||| ||||| |  ||||||||||||||    
T  29553514 taactcaaacagtctacgaaagcaaacacacaaaggaactacccccaaccaacggtcaaaccaaaacaa 29553446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 156; Significance: 7e-83; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 156; E-Value: 7e-83
Query Start/End: Original strand, 9 - 271
Target Start/End: Original strand, 45421745 - 45422008
Alignment:
Q  9 acatcaagaagtaaagtcctacactccgctaacatctcctcctcccactgccacaatctacgcctccatctccacataac-cccctgctgctccgaatca 107  Q
    ||||||||||| |||| |||||||||||||||||||||||||||||||||| |||||||||||||||| ||||| | ||  |||||||||||||  ||||    
T  45421745 acatcaagaagaaaagccctacactccgctaacatctcctcctcccactgcgacaatctacgcctccacctccaaaaaaaacccctgctgctccagatca 45421844  T
Q  108 acagagaacaagtctgccacagacatgaacttattctccgttaactcaaacagtctacgaaaacgaacacagaaaggaaagtcccctaaccacctatcaa 207  Q
    ||||||||||||||||||||| |||||| ||||||||| ||||||||||||| |||||||||||| |||||||| ||||  ||||||||||||||||| |    
T  45421845 acagagaacaagtctgccacatacatgagcttattctctgttaactcaaacaatctacgaaaacggacacagaacggaacatcccctaaccacctatcca 45421944  T
Q  208 accaaaacaacgtatcagctccgtctccaaccctcctagccacgtggccaacaaaccaaccaca 271  Q
    ||||||||||||||||||  || || |||||||||||||||||||| ||| ||||||| |||||    
T  45421945 accaaaacaacgtatcagaaccatcaccaaccctcctagccacgtgaccaccaaaccacccaca 45422008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 9 - 159
Target Start/End: Original strand, 43627725 - 43627875
Alignment:
Q  9 acatcaagaagtaaagtcctacactccgctaacatctcctcctcccactgccacaatctacgcctccatctccacataaccccctgctgctccgaatcaa 108  Q
    |||||||||||||||| |||||||||  ||| || |||||||||||||||||| || ||||| ||||| |||||||   |||||  |  |||||||||||    
T  43627725 acatcaagaagtaaagccctacactcatctagcaactcctcctcccactgccataacctacgtctccacctccacacctccccccacctctccgaatcaa 43627824  T
Q  109 cagagaacaagtctgccacagacatgaacttattctccgttaactcaaaca 159  Q
     ||||| |||||| |||||  ||||  |||||||||| |||||||||||||    
T  43627825 tagagagcaagtcggccacgaacatagacttattctctgttaactcaaaca 43627875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 9 - 159
Target Start/End: Original strand, 13550350 - 13550500
Alignment:
Q  9 acatcaagaagtaaagtcctacactccgctaacatctcctcctcccactgccacaatctacgcctccatctccacataaccccctgctgctccgaatcaa 108  Q
    |||||||||| ||||| ||| |||||| ||| ||  ||||| ||||||||||| || ||||| ||||| ||||||| | |||||  ||||||||||||||    
T  13550350 acatcaagaattaaagccctgcactcctctagcaagtcctcatcccactgccataacctacgtctccacctccacacatccccccactgctccgaatcaa 13550449  T
Q  109 cagagaacaagtctgccacagacatgaacttattctccgttaactcaaaca 159  Q
    |||| | |||||| |||||  | ||  |||||||||| |||||||||||||    
T  13550450 cagaaagcaagtccgccacgaatatagacttattctctgttaactcaaaca 13550500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 13 - 159
Target Start/End: Complemental strand, 26894522 - 26894376
Alignment:
Q  13 caagaagtaaagtcctacactccgctaacatctcctcctcccactgccacaatctacgcctccatctccacataaccccctgctgctccgaatcaacaga 112  Q
    |||||||||||| |||||||||  ||| || |||||||||||||||||| || ||||| ||||| |||||||    ||||  | |||||||| |||||||    
T  26894522 caagaagtaaagccctacactcatctagcaactcctcctcccactgccataacctacgtctccacctccacaccttcccccaccgctccgaagcaacaga 26894423  T
Q  113 gaacaagtctgccacagacatgaacttattctccgttaactcaaaca 159  Q
    || |||||| |  ||||||||  |||||||||| |||||||||||||    
T  26894422 gagcaagtcggtgacagacatagacttattctctgttaactcaaaca 26894376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 13 - 159
Target Start/End: Complemental strand, 26899961 - 26899815
Alignment:
Q  13 caagaagtaaagtcctacactccgctaacatctcctcctcccactgccacaatctacgcctccatctccacataaccccctgctgctccgaatcaacaga 112  Q
    |||||||||||| |||||||||  ||| || |||||||||||||||||| || ||||| ||||| |||||||    ||||  | |||||||| |||||||    
T  26899961 caagaagtaaagccctacactcatctagcaactcctcctcccactgccataacctacgtctccacctccacaccttcccccaccgctccgaagcaacaga 26899862  T
Q  113 gaacaagtctgccacagacatgaacttattctccgttaactcaaaca 159  Q
    || |||||| |  ||||||||  |||||||||| |||||||||||||    
T  26899861 gagcaagtcggtgacagacatagacttattctctgttaactcaaaca 26899815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 9 - 108
Target Start/End: Complemental strand, 31085551 - 31085452
Alignment:
Q  9 acatcaagaagtaaagtcctacactccgctaacatctcctcctcccactgccacaatctacgcctccatctccacataaccccctgctgctccgaatcaa 108  Q
    |||||||||||||||| ||||||||| ||||||| ||||||||||||||| ||||| || |  ||||| ||||||| | |||||  |||||| |||||||    
T  31085551 acatcaagaagtaaagccctacactctgctaacagctcctcctcccactgtcacaacctgcatctccacctccacacatccccccactgctctgaatcaa 31085452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 9 - 84
Target Start/End: Original strand, 33548098 - 33548173
Alignment:
Q  9 acatcaagaagtaaagtcctacactccgctaacatctcctcctcccactgccacaatctacgcctccatctccaca 84  Q
    |||||||||||||||| |||||||||  ||| || |||||||||||||||||| || ||||| ||||| |||||||    
T  33548098 acatcaagaagtaaagccctacactcatctagcaactcctcctcccactgccataacctacgtctccacctccaca 33548173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 9 - 61
Target Start/End: Original strand, 22052853 - 22052905
Alignment:
Q  9 acatcaagaagtaaagtcctacactccgctaacatctcctcctcccactgcca 61  Q
    |||||||||||||||| |||||||||| ||| || ||||||||||||||||||    
T  22052853 acatcaagaagtaaagccctacactcctctagcaactcctcctcccactgcca 22052905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 26 - 76
Target Start/End: Original strand, 15017919 - 15017969
Alignment:
Q  26 cctacactccgctaacatctcctcctcccactgccacaatctacgcctcca 76  Q
    |||||||||| ||||||||||||||||||||  ||||||||| ||||||||    
T  15017919 cctacactcctctaacatctcctcctcccacacccacaatctccgcctcca 15017969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 9 - 55
Target Start/End: Complemental strand, 22725348 - 22725302
Alignment:
Q  9 acatcaagaagtaaagtcctacactccgctaacatctcctcctccca 55  Q
    |||||||  |||||||||||||||||| |||||||||||||||||||    
T  22725348 acatcaaatagtaaagtcctacactcctctaacatctcctcctccca 22725302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 17 - 52
Target Start/End: Original strand, 28598172 - 28598207
Alignment:
Q  17 aagtaaagtcctacactccgctaacatctcctcctc 52  Q
    ||||||||||||||||||| ||||||||||||||||    
T  28598172 aagtaaagtcctacactcccctaacatctcctcctc 28598207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 95 - 159
Target Start/End: Original strand, 13550889 - 13550953
Alignment:
Q  95 ctgctccgaatcaacagagaacaagtctgccacagacatgaacttattctccgttaactcaaaca 159  Q
    |||||||||||||||||| | |||||| |||||  | ||  |||||||||| |||||||||||||    
T  13550889 ctgctccgaatcaacagaaagcaagtccgccacgaatatagacttattctctgttaactcaaaca 13550953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 20 - 76
Target Start/End: Original strand, 26679072 - 26679128
Alignment:
Q  20 taaagtcctacactccgctaacatctcctcctcccactgccacaatctacgcctcca 76  Q
    |||| ||||||||||| ||| ||||||||||||||| | ||||| ||| ||||||||    
T  26679072 taaactcctacactccactaccatctcctcctcccagtcccacattctccgcctcca 26679128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0029 (Bit Score: 154; Significance: 1e-81; HSPs: 1)
Name: scaffold0029
Description:

Target: scaffold0029; HSP #1
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 9 - 250
Target Start/End: Complemental strand, 134768 - 134527
Alignment:
Q  9 acatcaagaagtaaagtcctacactccgctaacatctcctcctcccactgccacaatctacgcctccatctccacataaccccctgctgctccgaatcaa 108  Q
    |||||||||||||||| |||||||||||||||||  |||||||||||||||||||| ||||| ||||| ||||||| |||||||  ||||||||||||||    
T  134768 acatcaagaagtaaagccctacactccgctaacaagtcctcctcccactgccacaacctacgtctccacctccacaaaaccccccactgctccgaatcaa 134669  T
Q  109 cagagaacaagtctgccacagacatgaacttattctccgttaactcaaacagtctacgaaaacgaacacagaaaggaaagtcccctaaccacctatcaaa 208  Q
     ||| |||||||||||||||||||| ||||||||||| |||||||||||||| ||||| ||||| ||||| |||||||  ||||||||||||||||| ||    
T  134668 tagataacaagtctgccacagacataaacttattctctgttaactcaaacagcctacggaaacggacacaaaaaggaacatcccctaaccacctatccaa 134569  T
Q  209 ccaaaacaacgtatcagctccgtctccaaccctcctagccac 250  Q
    |||||||||||||| |||||| ||||||||||||||||||||    
T  134568 ccaaaacaacgtattagctccatctccaaccctcctagccac 134527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 154; Significance: 1e-81; HSPs: 2)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 9 - 250
Target Start/End: Complemental strand, 312595 - 312354
Alignment:
Q  9 acatcaagaagtaaagtcctacactccgctaacatctcctcctcccactgccacaatctacgcctccatctccacataaccccctgctgctccgaatcaa 108  Q
    |||||||||||||||| |||||||||||||||||  |||||||||||||||||||| ||||| ||||| ||||||| |||||||  ||||||||||||||    
T  312595 acatcaagaagtaaagccctacactccgctaacaagtcctcctcccactgccacaacctacgtctccacctccacaaaaccccccactgctccgaatcaa 312496  T
Q  109 cagagaacaagtctgccacagacatgaacttattctccgttaactcaaacagtctacgaaaacgaacacagaaaggaaagtcccctaaccacctatcaaa 208  Q
     ||| |||||||||||||||||||| ||||||||||| |||||||||||||| ||||| ||||| ||||| |||||||  ||||||||||||||||| ||    
T  312495 tagataacaagtctgccacagacataaacttattctctgttaactcaaacagcctacggaaacggacacaaaaaggaacatcccctaaccacctatccaa 312396  T
Q  209 ccaaaacaacgtatcagctccgtctccaaccctcctagccac 250  Q
    |||||||||||||| |||||| ||||||||||||||||||||    
T  312395 ccaaaacaacgtattagctccatctccaaccctcctagccac 312354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002; HSP #2
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 9 - 250
Target Start/End: Complemental strand, 328049 - 327808
Alignment:
Q  9 acatcaagaagtaaagtcctacactccgctaacatctcctcctcccactgccacaatctacgcctccatctccacataaccccctgctgctccgaatcaa 108  Q
    |||||||||||||||| |||||||||||||||||  |||||||||||||||||||| ||||| ||||| ||||||| |||||||  ||||||||||||||    
T  328049 acatcaagaagtaaagccctacactccgctaacaagtcctcctcccactgccacaacctacgtctccacctccacaaaaccccccactgctccgaatcaa 327950  T
Q  109 cagagaacaagtctgccacagacatgaacttattctccgttaactcaaacagtctacgaaaacgaacacagaaaggaaagtcccctaaccacctatcaaa 208  Q
     ||| |||||||||||||||||||| ||||||||||| |||||||||||||| ||||| ||||| ||||| |||||||  ||||||||||||||||| ||    
T  327949 tagataacaagtctgccacagacataaacttattctctgttaactcaaacagcctacggaaacggacacaaaaaggaacatcccctaaccacctatccaa 327850  T
Q  209 ccaaaacaacgtatcagctccgtctccaaccctcctagccac 250  Q
    |||||||||||||| |||||| ||||||||||||||||||||    
T  327849 ccaaaacaacgtattagctccatctccaaccctcctagccac 327808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0418 (Bit Score: 120; Significance: 2e-61; HSPs: 1)
Name: scaffold0418
Description:

Target: scaffold0418; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 9 - 196
Target Start/End: Original strand, 7901 - 8088
Alignment:
Q  9 acatcaagaagtaaagtcctacactccgctaacatctcctcctcccactgccacaatctacgcctccatctccacataaccccctgctgctccgaatcaa 108  Q
    |||||||||||||||| | |||||||| |||||||||||||||||||||||||||||||||||||||| ||||| | || ||||||||||||| ||||||    
T  7901 acatcaagaagtaaagccatacactccactaacatctcctcctcccactgccacaatctacgcctccacctccaaaaaaacccctgctgctccaaatcaa 8000  T
Q  109 cagagaacaagtctgccacagacatgaacttattctccgttaactcaaacagtctacgaaaacgaacacagaaaggaaagtcccctaa 196  Q
    |||||||||||||||||| |||||||| |||||||||  |||||||||||| |||||||||||| |||||||| ||||  ||||||||    
T  8001 cagagaacaagtctgccatagacatgagcttattctctattaactcaaacaatctacgaaaacggacacagaacggaacatcccctaa 8088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0131 (Bit Score: 79; Significance: 6e-37; HSPs: 1)
Name: scaffold0131
Description:

Target: scaffold0131; HSP #1
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 134 - 268
Target Start/End: Complemental strand, 4338 - 4204
Alignment:
Q  134 gaacttattctccgttaactcaaacagtctacgaaaacgaacacagaaaggaaagtcccctaaccacctatcaaaccaaaacaacgtatcagctccgtct 233  Q
    ||||||||||||  ||||||||||||| ||||||||||| ||||| |||||||  ||||||||||||||||| |||||||||||||||| |||||| |||    
T  4338 gaacttattctctattaactcaaacagcctacgaaaacggacacaaaaaggaacatcccctaaccacctatccaaccaaaacaacgtatgagctccatct 4239  T
Q  234 ccaaccctcctagccacgtggccaacaaaccaacc 268  Q
    |||||||||| |||||| ||  |||||||||||||    
T  4238 ccaaccctccgagccacatgatcaacaaaccaacc 4204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 63; Significance: 2e-27; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 9 - 159
Target Start/End: Complemental strand, 23347381 - 23347231
Alignment:
Q  9 acatcaagaagtaaagtcctacactccgctaacatctcctcctcccactgccacaatctacgcctccatctccacataaccccctgctgctccgaatcaa 108  Q
    |||||||||||||||| |||||||||  ||| || |||||||||||||||||| || ||||| ||||| |||||||   |||||  | ||||||||||||    
T  23347381 acatcaagaagtaaagccctacactcatctagcaactcctcctcccactgccataacctacgtctccacctccacacctccccccaccgctccgaatcaa 23347282  T
Q  109 cagagaacaagtctgccacagacatgaacttattctccgttaactcaaaca 159  Q
    |||||| |||||| || || |||||  |||||||||| |||||||||||||    
T  23347281 cagagagcaagtcggcgacggacatagacttattctctgttaactcaaaca 23347231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 9 - 159
Target Start/End: Original strand, 25318080 - 25318230
Alignment:
Q  9 acatcaagaagtaaagtcctacactccgctaacatctcctcctcccactgccacaatctacgcctccatctccacataaccccctgctgctccgaatcaa 108  Q
    |||||||||||||||| |||||||||| ||| || |||||||||||||||||| || |||||  |||| ||||||| | |||||  | |||  |||||||    
T  25318080 acatcaagaagtaaagccctacactcctctagcaactcctcctcccactgccataacctacgtatccacctccacaaatccccccaccgctttgaatcaa 25318179  T
Q  109 cagagaacaagtctgccacagacatgaacttattctccgttaactcaaaca 159  Q
    |||| | |||||| ||||| ||||| ||||||||||  |||||||||||||    
T  25318180 cagatagcaagtccgccacggacataaacttattctttgttaactcaaaca 25318230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 9 - 159
Target Start/End: Original strand, 26205574 - 26205724
Alignment:
Q  9 acatcaagaagtaaagtcctacactccgctaacatctcctcctcccactgccacaatctacgcctccatctccacataaccccctgctgctccgaatcaa 108  Q
    |||||||||||||||| |||||||||| ||| || |||||||||||||||||| || |||||  |||| ||||||| | |||||  | |||  |||||||    
T  26205574 acatcaagaagtaaagccctacactcctctagcaactcctcctcccactgccataacctacgtatccacctccacaaatccccccaccgctttgaatcaa 26205673  T
Q  109 cagagaacaagtctgccacagacatgaacttattctccgttaactcaaaca 159  Q
    |||| | |||||| ||||| ||||| ||||||||||  |||||||||||||    
T  26205674 cagatagcaagtccgccacggacataaacttattctttgttaactcaaaca 26205724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 9 - 159
Target Start/End: Original strand, 15674051 - 15674205
Alignment:
Q  9 acatcaagaagtaaagtcctacactccgctaacatctcctcctcccactgccacaatctacgcctccatctccacataacc----ccctgctgctccgaa 104  Q
    |||||||||||||||| ||| |||||  ||| || ||||||||||||||||||||| ||||| ||||| |||||||   ||    |||    |||| |||    
T  15674051 acatcaagaagtaaagccctgcactcatctagcaactcctcctcccactgccacaacctacgtctccacctccacacctccccggccccaacgctctgaa 15674150  T
Q  105 tcaacagagaacaagtctgccacagacatgaacttattctccgttaactcaaaca 159  Q
    ||||||||||  ||||| |||||||||||  ||||||||||||||||||||||||    
T  15674151 tcaacagagagtaagtcggccacagacatagacttattctccgttaactcaaaca 15674205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 9 - 64
Target Start/End: Original strand, 33630323 - 33630378
Alignment:
Q  9 acatcaagaagtaaagtcctacactccgctaacatctcctcctcccactgccacaa 64  Q
    ||||||| || ||||| |||||||||||||||||||||||||||||||||||||||    
T  33630323 acatcaaaaaataaagccctacactccgctaacatctcctcctcccactgccacaa 33630378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 9 - 76
Target Start/End: Original strand, 19255866 - 19255933
Alignment:
Q  9 acatcaagaagtaaagtcctacactccgctaacatctcctcctcccactgccacaatctacgcctcca 76  Q
    |||||||| || |||| |||||||||| ||||||||||||||||||||  ||||||||| ||||||||    
T  19255866 acatcaagcagaaaagccctacactccactaacatctcctcctcccacgcccacaatctccgcctcca 19255933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 9 - 76
Target Start/End: Original strand, 33640144 - 33640211
Alignment:
Q  9 acatcaagaagtaaagtcctacactccgctaacatctcctcctcccactgccacaatctacgcctcca 76  Q
    |||||||| || |||| |||||||||| ||||||||||||||||||||  ||||||||| ||||||||    
T  33640144 acatcaagcagaaaagccctacactccactaacatctcctcctcccacgcccacaatctccgcctcca 33640211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 9 - 53
Target Start/End: Original strand, 1683266 - 1683310
Alignment:
Q  9 acatcaagaagtaaagtcctacactccgctaacatctcctcctcc 53  Q
    |||||||||||||||| |||||||||||||||||||||| |||||    
T  1683266 acatcaagaagtaaagccctacactccgctaacatctccacctcc 1683310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 9 - 76
Target Start/End: Complemental strand, 503446 - 503379
Alignment:
Q  9 acatcaagaagtaaagtcctacactccgctaacatctcctcctcccactgccacaatctacgcctcca 76  Q
    |||||||| || |||| |||||||||| ||||||||||||||||||||  | ||||||| ||||||||    
T  503446 acatcaagcagaaaagccctacactccactaacatctcctcctcccacgcctacaatctccgcctcca 503379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 26 - 76
Target Start/End: Complemental strand, 5085923 - 5085873
Alignment:
Q  26 cctacactccgctaacatctcctcctcccactgccacaatctacgcctcca 76  Q
    |||||||||| ||||||||||||||||||||  ||||||||| ||||||||    
T  5085923 cctacactcctctaacatctcctcctcccacgcccacaatctccgcctcca 5085873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 20 - 76
Target Start/End: Complemental strand, 25036085 - 25036029
Alignment:
Q  20 taaagtcctacactccgctaacatctcctcctcccactgccacaatctacgcctcca 76  Q
    |||| ||||||||||| ||| ||||||||||||||| | ||||| ||| ||||||||    
T  25036085 taaactcctacactccactaccatctcctcctcccagtcccacattctccgcctcca 25036029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0112 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0112
Description:

Target: scaffold0112; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 9 - 67
Target Start/End: Complemental strand, 15564 - 15506
Alignment:
Q  9 acatcaagaagtaaagtcctacactccgctaacatctcctcctcccactgccacaatct 67  Q
    |||||||  ||||||| |||||||||| ||||||| ||||||||||||  |||||||||    
T  15564 acatcaaatagtaaagccctacactcctctaacatatcctcctcccacgcccacaatct 15506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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