View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9089_high_3 (Length: 239)
Name: NF9089_high_3
Description: NF9089
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9089_high_3 |
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Alignment Details
Target: chr7 (Bit Score: 85; Significance: 1e-40; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 1 - 93
Target Start/End: Complemental strand, 40811084 - 40810992
Alignment:
| Q |
1 |
atttattttgcttttctagatccagtggtttaaaggttctttgcattatatagtacagtttctcactcactttcttcttatcggaagttatag |
93 |
Q |
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| T |
40811084 |
atttattttgcttttctagatccagtggtttaaaggttctttgcattatatagtaccgtttctcactcactttcttcttattggaagttatag |
40810992 |
T |
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Target: chr7; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 145 - 222
Target Start/End: Complemental strand, 40810940 - 40810863
Alignment:
| Q |
145 |
gtgcctttttacatagaaaaacaacagtgagattgttgagataataatggatgaagattaattagagaaacgaagatg |
222 |
Q |
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| T |
40810940 |
gtgcctttttacatagaaaaacaacagtgagattgttgagataataatggatgaagattaattagagaaacgaagatg |
40810863 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 85; Significance: 1e-40; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 1 - 93
Target Start/End: Original strand, 38632661 - 38632753
Alignment:
| Q |
1 |
atttattttgcttttctagatccagtggtttaaaggttctttgcattatatagtacagtttctcactcactttcttcttatcggaagttatag |
93 |
Q |
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| T |
38632661 |
atttattttgcttttctagatccagtggtttaaaggttctttgcattatatagtaccgtttctcactcactttcttcttattggaagttatag |
38632753 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 145 - 222
Target Start/End: Original strand, 38632805 - 38632882
Alignment:
| Q |
145 |
gtgcctttttacatagaaaaacaacagtgagattgttgagataataatggatgaagattaattagagaaacgaagatg |
222 |
Q |
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| T |
38632805 |
gtgcctttttacatagaaaaacaacagtgagattgttgagataataatggatgaagattaattagagaaacgaagatg |
38632882 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 70; Significance: 1e-31; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 145 - 222
Target Start/End: Complemental strand, 26932997 - 26932920
Alignment:
| Q |
145 |
gtgcctttttacatagaaaaacaacagtgagattgttgagataataatggatgaagattaattagagaaacgaagatg |
222 |
Q |
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|
|||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
26932997 |
gtgcctttttacatagaaaaacaacagtgagattattgagatgataatggatgaagattaattagagaaacgaagatg |
26932920 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 1 - 93
Target Start/End: Complemental strand, 26933135 - 26933043
Alignment:
| Q |
1 |
atttattttgcttttctagatccagtggtttaaaggttctttgcattatatagtacagtttctcactcactttcttcttatcggaagttatag |
93 |
Q |
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|
||||||||| ||||||||||||||||||||||||| ||||||| |||||||||||| ||||||||||| |||||||||||| ||||||||||| |
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| T |
26933135 |
atttattttacttttctagatccagtggtttaaagattctttgtattatatagtaccgtttctcactcgctttcttcttattggaagttatag |
26933043 |
T |
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