View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9089_low_11 (Length: 238)
Name: NF9089_low_11
Description: NF9089
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9089_low_11 |
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Alignment Details
Target: chr2 (Bit Score: 202; Significance: 1e-110; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 18 - 223
Target Start/End: Complemental strand, 41486252 - 41486047
Alignment:
| Q |
18 |
aaacaccttccttcaaggaagccttccttccttccctaaaattccagagttctggtattgggtatctaccactagggttgtactcatttaactccttcag |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41486252 |
aaacaccttccttcaaggaagccttccttccttccctaaaattccagagttctggtattgggtatctaccactagggttgtactcatttaactccttcag |
41486153 |
T |
|
| Q |
118 |
agctgtagctactgcatcttgcacctcatccccaaactcatccttcaaacttttcagctttttatcttctccatctaaaatttcctgtgtgatatatctt |
217 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
41486152 |
agctgtagctactgcatcatgcacctcatccccaaactcatccttcaaacttttcagctttttatcttctccatctaaaatttcctgtgtgatatatctt |
41486053 |
T |
|
| Q |
218 |
acatat |
223 |
Q |
| |
|
|||||| |
|
|
| T |
41486052 |
acatat |
41486047 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 154; E-Value: 8e-82
Query Start/End: Original strand, 26 - 223
Target Start/End: Complemental strand, 40753373 - 40753177
Alignment:
| Q |
26 |
tccttcaaggaagccttccttccttccctaaaattccagagttctggtattgggtatctaccactagggttgtactcatttaactccttcagagctgtag |
125 |
Q |
| |
|
|||||||| |||||||||||||||||| |||||||||||||||| |||| |||||| ||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
40753373 |
tccttcaacgaagccttccttccttccttaaaattccagagttccggtactgggtacctaccactagggttgtactcatttaactccttcagagctgtag |
40753274 |
T |
|
| Q |
126 |
ctactgcatcttgcacctcatccccaaactcatccttcaaacttttcagctttttatcttctccatctaaaatttcctgtgtgatatatcttacatat |
223 |
Q |
| |
|
|||||||||| ||||||| |||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||| |
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|
| T |
40753273 |
ctactgcatcatgcaccttatcccc-aactcatccttcaaacttttcagcttttcatcttctccatctaaaatttcctgtgtgatatatctaacatat |
40753177 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 18 - 223
Target Start/End: Complemental strand, 41472126 - 41471921
Alignment:
| Q |
18 |
aaacaccttccttcaaggaagccttccttccttccctaaaattccagagttctggtattgggtatctaccactagggttgtactcatttaactccttcag |
117 |
Q |
| |
|
||||||| |||||||| | |||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||| |||| |||||||||||||| |
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|
| T |
41472126 |
aaacaccctccttcaacgtggccttccttccttccctaaaattccagagttccggtattgggtacctaccactagggttgcactcgtttaactccttcag |
41472027 |
T |
|
| Q |
118 |
agctgtagctactgcatcttgcacctcatccccaaactcatccttcaaacttttcagctttttatcttctccatctaaaatttcctgtgtgatatatctt |
217 |
Q |
| |
|
|||||||||||||||||| |||||||||||||| |||||||||||||||||||| ||||||| ||||||||| |||||||||||||| ||| ||||| | |
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|
| T |
41472026 |
agctgtagctactgcatcatgcacctcatccccgaactcatccttcaaactttttagcttttcatcttctccgtctaaaatttcctgcgtggtatatgta |
41471927 |
T |
|
| Q |
218 |
acatat |
223 |
Q |
| |
|
|||||| |
|
|
| T |
41471926 |
acatat |
41471921 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 18 - 223
Target Start/End: Complemental strand, 41479127 - 41478922
Alignment:
| Q |
18 |
aaacaccttccttcaaggaagccttccttccttccctaaaattccagagttctggtattgggtatctaccactagggttgtactcatttaactccttcag |
117 |
Q |
| |
|
||||||| |||||||| | |||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||| |||| |||||||||||||| |
|
|
| T |
41479127 |
aaacaccctccttcaatgtggccttccttccttccctaaaattccagagttccggtattgggtacctaccactagggttgcactcgtttaactccttcag |
41479028 |
T |
|
| Q |
118 |
agctgtagctactgcatcttgcacctcatccccaaactcatccttcaaacttttcagctttttatcttctccatctaaaatttcctgtgtgatatatctt |
217 |
Q |
| |
|
|||||||||||||||||| |||||||||||||| |||||||||||||||||||| ||||||| ||||||||| ||| |||||||||| ||| ||||| | |
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|
| T |
41479027 |
agctgtagctactgcatcatgcacctcatccccgaactcatccttcaaactttttagcttttcatcttctccgtctgaaatttcctgcgtggtatatgta |
41478928 |
T |
|
| Q |
218 |
acatat |
223 |
Q |
| |
|
|||||| |
|
|
| T |
41478927 |
acatat |
41478922 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 138; Significance: 3e-72; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 18 - 223
Target Start/End: Original strand, 16407273 - 16407478
Alignment:
| Q |
18 |
aaacaccttccttcaaggaagccttccttccttccctaaaattccagagttctggtattgggtatctaccactagggttgtactcatttaactccttcag |
117 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||| |||||||||||||||| |||||||| | || |||||||| ||||||||||||||||||||||| |
|
|
| T |
16407273 |
aaacaccttccttcaacgaagccttccttccttccttaaaattccagagttccggtattggattcctgccactaggattgtactcatttaactccttcag |
16407372 |
T |
|
| Q |
118 |
agctgtagctactgcatcttgcacctcatccccaaactcatccttcaaacttttcagctttttatcttctccatctaaaatttcctgtgtgatatatctt |
217 |
Q |
| |
|
||| |||| ||||||||| ||| |||||||||||| |||||||||||||||||||||||||| ||||||||| |||||||||||||| ||||||||||| |
|
|
| T |
16407373 |
agccgtagatactgcatcatgcgcctcatccccaacctcatccttcaaacttttcagcttttcatcttctccgtctaaaatttcctgcgtgatatatcta |
16407472 |
T |
|
| Q |
218 |
acatat |
223 |
Q |
| |
|
|||||| |
|
|
| T |
16407473 |
acatat |
16407478 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 18 - 206
Target Start/End: Complemental strand, 52482364 - 52482176
Alignment:
| Q |
18 |
aaacaccttccttcaaggaagccttccttccttccctaaaattccagagttctggtattgggtatctaccactagggttgtactcatttaactccttcag |
117 |
Q |
| |
|
||||||| ||||||| | |||||||||||||||| |||||||||||||||| |||||| |||||| |||||||| |||||||||||||||||||| || |
|
|
| T |
52482364 |
aaacaccctccttcaccgtagccttccttccttccttaaaattccagagttcaagtattgagtatcttccactaggattgtactcatttaactcctttag |
52482265 |
T |
|
| Q |
118 |
agctgtagctactgcatcttgcacctcatccccaaactcatccttcaaacttttcagctttttatcttctccatctaaaatttcctgtg |
206 |
Q |
| |
|
||||||| |||||||||| ||||||| |||||| || |||||||| ||||||||||| |||| ||||||||| |||||||||||||||| |
|
|
| T |
52482264 |
agctgtaactactgcatcatgcaccttatccccgaattcatcctttaaacttttcagtttttcatcttctccgtctaaaatttcctgtg |
52482176 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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