View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9089_low_2 (Length: 791)
Name: NF9089_low_2
Description: NF9089
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9089_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 518; Significance: 0; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 518; E-Value: 0
Query Start/End: Original strand, 20 - 691
Target Start/End: Complemental strand, 3243610 - 3242949
Alignment:
| Q |
20 |
tatcgttcacaataaacgcattccatgggttgtggagttcatccaaatgtatgaacttgtcgacactccagcaataattacttgcattgaactcctgttc |
119 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
3243610 |
tatcattcacaataaacgcattccatgggttgtggagttcatccaaatgtatgaacttgtcgacactccagcaataattacttgcattgagctcctgttc |
3243511 |
T |
|
| Q |
120 |
agtttctgatagagacatatagtgtcgtgttcggttaaaaacaacttatataaagggaaaaataatgaatgtatcggatatgaattcattgacatgctca |
219 |
Q |
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| T |
3243510 |
agtttctgat------------tgtcgtgttcggttaaaaacaacttgtataaaggggaaaaaaatgaatgtatcgcatatgaattcattcacatgctca |
3243423 |
T |
|
| Q |
220 |
accacaaaataaaggaaagttcatcacaaaacaactattgatataattaacagatgtcatggtgccttgtaccaaaaaatgtaaaagcaattgttaatat |
319 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3243422 |
accacaaaataaaggaaagttcatcacaaaacaactattgatataattaacagatgtcatggtgccttgtaccaaaaaatgtaaaagcaattgttaatat |
3243323 |
T |
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| Q |
320 |
gaaacatacctttgacaattgtgagcaaggcattggcttgattagtaagagccaactcaagatttacatatcttttccagtatttagaaaaatcagtaat |
419 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
3243322 |
gaaacatacctttgacaattgtgagcaaggcattggcttgattagtaagagccaactcaagatttacatatcttttccagtctttagaaaaatcagtaat |
3243223 |
T |
|
| Q |
420 |
atcagcaacaaccgaaagaattgataatgacaagtaaccagagttgttctcgttcccttttggattcataacaatccgcctgaaaaacaacatcgaaaac |
519 |
Q |
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| T |
3243222 |
atcagcaacaaccgaaagaattgataatgacaagtaaccagagttgttctcgttcccttttggattcataacaatccgcctgaaaaacaacatcgaaaac |
3243123 |
T |
|
| Q |
520 |
at--nnnnnnnnnnnnnnnnnnnncatgacaatgatgattacgttggaaactggaattcactcgatcaccaaccatggatagccattcaagaaaaagctg |
617 |
Q |
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| T |
3243122 |
ataaaaaaaaaaaagtgtaaaaaacatgacaatgatgattacataggaaactggaattcaatcgatcaccaaccatggatagccattcaagaaaaagctg |
3243023 |
T |
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| Q |
618 |
tctgagtacatctgagaatcacacttagagaagttcttaatcgtccatgtgaattgctcaatcgtccatgggga |
691 |
Q |
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| T |
3243022 |
tctgagtacatctgagaatcacacttagagaagttcttaatcgtccatgtgaattgctcaatcgtccatgggga |
3242949 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 73; E-Value: 6e-33
Query Start/End: Original strand, 294 - 521
Target Start/End: Complemental strand, 3239204 - 3238977
Alignment:
| Q |
294 |
aaaaatgtaaaagcaattgttaatatgaaacatacctttgacaattgtgagcaaggcattggcttgattagtaagagccaactcaagattta----cata |
389 |
Q |
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|||||||||||| |||||||| |||||||||||||||| ||||||| ||||||||| || |||||| |||||||||||||||||||||| |||| |
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| T |
3239204 |
aaaaatgtaaaactaattgttattatgaaacataccttttgcaattgttagcaaggcactgaattgatttgtaagagccaactcaagatttacatacata |
3239105 |
T |
|
| Q |
390 |
tcttttccagtatttagaaaaatcagtaatatcagcaacaaccgaaagaattgataatgacaagtaaccagagttgttctcgttcccttttggattcata |
489 |
Q |
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|||| |||| ||||| ||||| ||| || ||||| | || |||||| |||||||||||||| | |||||||| | ||||||||||||||||| |
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| T |
3239104 |
tcttctccaccctttaggaaaat---taaaattgtcaacattcaaataaattgacaatgacaagtaacctgggttgttcttgctcccttttggattcata |
3239008 |
T |
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| Q |
490 |
acaatccgcctgaaaaacaacatcgaaaacat |
521 |
Q |
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| T |
3239007 |
acaatccgcctgaaaaa-aatatcgaaaacat |
3238977 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 713 - 785
Target Start/End: Complemental strand, 3242966 - 3242894
Alignment:
| Q |
713 |
ctcaatcgtccatggggaccatggggatatattctccatctcagcagcctaacagcttcaactctaacaccat |
785 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
3242966 |
ctcaatcgtccatggggaccatggggatatgttctccatctcagcagcctaacagcttcaactctaacaccat |
3242894 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 618 - 711
Target Start/End: Complemental strand, 3238887 - 3238794
Alignment:
| Q |
618 |
tctgagtacatctgagaatcacacttagagaagttcttaatcgtccatgtgaattgctcaatcgtccatggggatatattctcaaatgctttac |
711 |
Q |
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||||||||| ||| ||||||||| || |||||||| ||||||||||||||||||||||||||||||| ||||||| | ||||||| |||||||| |
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| T |
3238887 |
tctgagtacgtcttagaatcacatttggagaagttattaatcgtccatgtgaattgctcaatcgtccctggggatttcttctcaattgctttac |
3238794 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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