View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9089_low_3 (Length: 409)
Name: NF9089_low_3
Description: NF9089
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9089_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 159; Significance: 1e-84; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 208 - 402
Target Start/End: Complemental strand, 43655158 - 43654964
Alignment:
| Q |
208 |
aagaaataatgatgcaatgcattatcttccaaattaatatactcctatgcaagagaattcattaagttcagtcgtcaaaatcattccaccatgtgatcct |
307 |
Q |
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|||||||| | ||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
43655158 |
aagaaatagttatgtagtgcattatcttccaaattaatatactcctatgcaagagaattcattaagttcagccgtcaaaatcattccaccatgtgatcct |
43655059 |
T |
|
| Q |
308 |
gtaaaattctttggatgggcattcgataaatgcatctaacttgatgcatatccactttgacaatgctaaaagttgaattgttagaataatctacc |
402 |
Q |
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||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||| |||| |
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| T |
43655058 |
gtaaaattctttggatgggcattcgataagtgcatctaatttgatgcatatccactttgacaatgctaaaagttgaattgttagaagaatgtacc |
43654964 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 11 - 116
Target Start/End: Complemental strand, 43655260 - 43655155
Alignment:
| Q |
11 |
atacctcatctccttgctcaactaagtaaaggttgattgcctttccatggccactaaatagtatagtaaatctttatcacagtatacaaacttcacacca |
110 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
43655260 |
atacctcatctccttgctcaactaagtaaatattgattgcctttccatggccactaaatagtatagtaaatcttcatcacagtatacaaacttcacacca |
43655161 |
T |
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| Q |
111 |
taaaga |
116 |
Q |
| |
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|||||| |
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| T |
43655160 |
taaaga |
43655155 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 327 - 363
Target Start/End: Complemental strand, 43654315 - 43654279
Alignment:
| Q |
327 |
cattcgataaatgcatctaacttgatgcatatccact |
363 |
Q |
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|||||||||| ||||||||| |||||||||||||||| |
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| T |
43654315 |
cattcgataagtgcatctaatttgatgcatatccact |
43654279 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 135; Significance: 3e-70; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 208 - 402
Target Start/End: Complemental strand, 8364119 - 8363925
Alignment:
| Q |
208 |
aagaaataatgatgcaatgcattatcttccaaattaatatactcctatgcaagagaattcattaagttcagtcgtcaaaatcattccaccatgtgatcct |
307 |
Q |
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|||||||| | ||| | ||||||||||||| ||||||||||||||||||||| |||| ||||||||||||| |||||||||||||||||||||||||||| |
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| T |
8364119 |
aagaaatagttatgtagtgcattatcttccgaattaatatactcctatgcaacagaactcattaagttcagccgtcaaaatcattccaccatgtgatcct |
8364020 |
T |
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| Q |
308 |
gtaaaattctttggatgggcattcgataaatgcatctaacttgatgcatatccactttgacaatgctaaaagttgaattgttagaataatctacc |
402 |
Q |
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||||| || |||||||||||||||||||| ||||||||| |||||||||||||||||||||||| ||||||||||||||||||||| ||| |||| |
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| T |
8364019 |
gtaaatttttttggatgggcattcgataagtgcatctaatttgatgcatatccactttgacaatactaaaagttgaattgttagaagaatgtacc |
8363925 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 11 - 116
Target Start/End: Complemental strand, 8364221 - 8364116
Alignment:
| Q |
11 |
atacctcatctccttgctcaactaagtaaaggttgattgcctttccatggccactaaatagtatagtaaatctttatcacagtatacaaacttcacacca |
110 |
Q |
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|||||||||||||||||| | ||||||||||| || ||||||||||||| |||||||||||||| |||||||||||||| |||||||||||||||||||| |
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| T |
8364221 |
atacctcatctccttgctaagctaagtaaaggctgcttgcctttccatgcccactaaatagtatggtaaatctttatcatagtatacaaacttcacacca |
8364122 |
T |
|
| Q |
111 |
taaaga |
116 |
Q |
| |
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|||||| |
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| T |
8364121 |
taaaga |
8364116 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 174 - 203
Target Start/End: Original strand, 2532077 - 2532106
Alignment:
| Q |
174 |
acatatattatagggtgaaaaacactatta |
203 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
2532077 |
acatatattatagggtgaaaaacactatta |
2532106 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 95; Significance: 2e-46; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 208 - 393
Target Start/End: Original strand, 32404453 - 32404639
Alignment:
| Q |
208 |
aagaaataatgatgcaatgcattatcttccaaattaatatactcctatgcaagagaattcattaagttcagtcgtcaaaatcattccaccatgtgatcct |
307 |
Q |
| |
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|||||||| | ||| | |||||||||||| |||||||||||||||||||||||||| ||||||||||||| | |||||||||||||||||||||||||| |
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| T |
32404453 |
aagaaatagttatgtagtgcattatcttctgaattaatatactcctatgcaagagaactcattaagttcagccatcaaaatcattccaccatgtgatcct |
32404552 |
T |
|
| Q |
308 |
gtaaaattctttggatgggcattcgataaatgcatctaa-cttgatgcatatccactttgacaatgctaaaagttgaattgttagaa |
393 |
Q |
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||| || |||||| || |||||||||||| ||||||||| |||||||| | |||||| || |||| ||| |||||||||||||||| |
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| T |
32404553 |
gtacaactctttgaataggcattcgataagtgcatctaattttgatgcaaacccacttagaaaatgttaacagttgaattgttagaa |
32404639 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 11 - 116
Target Start/End: Original strand, 32404352 - 32404456
Alignment:
| Q |
11 |
atacctcatctccttgctcaactaagtaaaggttgattgcctttccatggccactaaatagtatagtaaatctttatcacagtatacaaacttcacacca |
110 |
Q |
| |
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|||||||||||||||||| | ||||||||||| || |||||||||||||||||||||||||||| |||||||||||||| | |||||||||||||||||| |
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| T |
32404352 |
atacctcatctccttgctaagctaagtaaaggctgcttgcctttccatggccactaaatagtatggtaaatctttatcata-tatacaaacttcacacca |
32404450 |
T |
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| Q |
111 |
taaaga |
116 |
Q |
| |
|
|||||| |
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|
| T |
32404451 |
taaaga |
32404456 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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