View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9089_low_5 (Length: 327)
Name: NF9089_low_5
Description: NF9089
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9089_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 298; Significance: 1e-167; HSPs: 9)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 1 - 302
Target Start/End: Original strand, 46328544 - 46328845
Alignment:
| Q |
1 |
gacagtgatcctatttgtaatgatagataaattgttacttgtattgcagaaattgggagctaacggcaccatggactggagtgaaaatcaaggtgcctgt |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46328544 |
gacagtgatcctatttgtaatgatagataaattgttacttgtattgcagaaattgggagctaacggcaccatggactggagtgaaaatcaaggtgcctgt |
46328643 |
T |
|
| Q |
101 |
gaaattcataacgggtgagttagacatggtgtacaactcgtttaacttgaaagagtatatccatggaggagggttcaaggaagatgtgccgaatttggaa |
200 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46328644 |
gaaattcataacgggtgagttagacatggtgtacacctcgtttaacttgaaagagtatatccatggaggagggttcaaggaagatgtgccgaatttggaa |
46328743 |
T |
|
| Q |
201 |
gaagtgattattcaaaaaggagttgctcacttcaacaatcaagaagctgaagaggaaatcagtaattacatttacgaattcatcatgaagttctgagctg |
300 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46328744 |
gaagtgattattcaaaaaggagttgctcacttcaacaatcaagaagctgaagaggaaatcagtaattacatttacgaattcatcatgaagttctgagctg |
46328843 |
T |
|
| Q |
301 |
at |
302 |
Q |
| |
|
|| |
|
|
| T |
46328844 |
at |
46328845 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 163; E-Value: 5e-87
Query Start/End: Original strand, 35 - 301
Target Start/End: Original strand, 46324146 - 46324412
Alignment:
| Q |
35 |
ttacttgtattgcagaaattgggagctaacggcaccatggactggagtgaaaatcaaggtgcctgtgaaattcataacgggtgagttagacatggtgtac |
134 |
Q |
| |
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||||||||||||||||||||||||||| | ||||||||||| ||||||||||||||||||||||||||||||||| || ||||| |||||||| || ||| |
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| T |
46324146 |
ttacttgtattgcagaaattgggagctgatggcaccatggaatggagtgaaaatcaaggtgcctgtgaaattcattacaggtgacttagacattgtatac |
46324245 |
T |
|
| Q |
135 |
aactcgtttaacttgaaagagtatatccatggaggagggttcaaggaagatgtgccgaatttggaagaagtgattattcaaaaaggagttgctcacttca |
234 |
Q |
| |
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| ||| || |||| |||||||||||||| ||||| |||||||||||||||||||||||||||||||||||| | ||||||||||| |||||||||| |
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| T |
46324246 |
acctcaccaaaggtgaaggagtatatccatggtggaggattcaaggaagatgtgccgaatttggaagaagtgattgtccaaaaaggagtggctcacttca |
46324345 |
T |
|
| Q |
235 |
acaatcaagaagctgaagaggaaatcagtaattacatttacgaattcatcatgaagttctgagctga |
301 |
Q |
| |
|
||||||||||||| | |||||||||||||||| ||||||| |||||||||| ||||||||||||||| |
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| T |
46324346 |
acaatcaagaagcagcagaggaaatcagtaatcacatttatgaattcatcaagaagttctgagctga |
46324412 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 39 - 303
Target Start/End: Complemental strand, 46519497 - 46519233
Alignment:
| Q |
39 |
ttgtattgcagaaattgggagctaacggcaccatggactggagtgaaaatcaaggtgcctgtgaaattcataacgggtgagttagacatggtgtacaact |
138 |
Q |
| |
|
||||||||||||||||||||||| || |||||||||| ||||||||||||||||||||||||||||||||| || ||||| || || |||||||||| || |
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| T |
46519497 |
ttgtattgcagaaattgggagctcacagcaccatggagtggagtgaaaatcaaggtgcctgtgaaattcattacaggtgatttggatatggtgtacacct |
46519398 |
T |
|
| Q |
139 |
cgtttaacttgaaagagtatatccatggaggagggttcaaggaagatgtgccgaatttggaagaagtgattattcaaaaaggagttgctcacttcaacaa |
238 |
Q |
| |
|
|| || |||| |||||||||||||| ||||| |||||||||||||||||||||||||| ||||||||| | ||||||||||| ||||| |||||||| |
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| T |
46519397 |
cgccacacgtgaaggagtatatccatggtggaggattcaaggaagatgtgccgaatttggaggaagtgattgtgcaaaaaggagtagctcatttcaacaa |
46519298 |
T |
|
| Q |
239 |
tcaagaagctgaagaggaaatcagtaattacatttacgaattcatcatgaagttctgagctgatc |
303 |
Q |
| |
|
||||||||||| ||||||||| |||||| |||||||||||||||||| ||| ||||||||||||| |
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|
| T |
46519297 |
tcaagaagctgcagaggaaattagtaatcacatttacgaattcatcaagaaattctgagctgatc |
46519233 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 18 - 299
Target Start/End: Complemental strand, 46530293 - 46530012
Alignment:
| Q |
18 |
taatgatagataaattgttacttgtattgcagaaattgggagctaacggcaccatggactggagtgaaaatcaaggtgcctgtgaaattcataacgggtg |
117 |
Q |
| |
|
|||||| |||| ||| ||||||||||||||||||||||||||||| ||||||||||| ||| ||||||||||||||||||||||||||||| || |||| |
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| T |
46530293 |
taatgaaagatgcattattacttgtattgcagaaattgggagctaatggcaccatggaatggggtgaaaatcaaggtgcctgtgaaattcattacaggtg |
46530194 |
T |
|
| Q |
118 |
agttagacatggtgtacaactcgtttaacttgaaagagtatatccatggaggagggttcaaggaagatgtgccgaatttggaagaagtgattattcaaaa |
217 |
Q |
| |
|
| || || |||||||||| ||| | ||| |||| |||||||||||||| || || |||||||||||||| || ||| |||||||||||||||| ||||| |
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| T |
46530193 |
atttggatatggtgtacacctcactaaacatgaaggagtatatccatggtgggggattcaaggaagatgttcccaatctggaagaagtgattatccaaaa |
46530094 |
T |
|
| Q |
218 |
aggagttgctcacttcaacaatcaagaagctgaagaggaaatcagtaattacatttacgaattcatcatgaagttctgagct |
299 |
Q |
| |
|
|||||| || |||||||||||||||||||| | ||||||||| |||||| ||||||| |||||||||| ||||||||||||| |
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|
| T |
46530093 |
aggagtggcgcacttcaacaatcaagaagcagcagaggaaataagtaatcacatttatgaattcatcaagaagttctgagct |
46530012 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 18 - 299
Target Start/End: Complemental strand, 46522860 - 46522579
Alignment:
| Q |
18 |
taatgatagataaattgttacttgtattgcagaaattgggagctaacggcaccatggactggagtgaaaatcaaggtgcctgtgaaattcataacgggtg |
117 |
Q |
| |
|
|||||| |||| ||| |||||||||| |||||||||||||||| | ||| ||||||| ||||||||||||||||||||||||||||||||| || |||| |
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| T |
46522860 |
taatgaaagatgcatttttacttgtatggcagaaattgggagctgatggcgccatggaatggagtgaaaatcaaggtgcctgtgaaattcattacaggtg |
46522761 |
T |
|
| Q |
118 |
agttagacatggtgtacaactcgtttaacttgaaagagtatatccatggaggagggttcaaggaagatgtgccgaatttggaagaagtgattattcaaaa |
217 |
Q |
| |
|
| || || |||||||||| ||| | ||| |||| |||||||||||||| || || |||||||||||||| || ||| |||||||||||||||| ||||| |
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|
| T |
46522760 |
atttggatatggtgtacacctcactaaacatgaaggagtatatccatggtgggggattcaaggaagatgttcccaatctggaagaagtgattatccaaaa |
46522661 |
T |
|
| Q |
218 |
aggagttgctcacttcaacaatcaagaagctgaagaggaaatcagtaattacatttacgaattcatcatgaagttctgagct |
299 |
Q |
| |
|
|||||| || |||||||||||||||||||| | ||||||||| |||||| ||||||| |||||||||| ||||||||||||| |
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|
| T |
46522660 |
aggagtggcgcacttcaacaatcaagaagcagcagaggaaataagtaatcacatttatgaattcatcaagaagttctgagct |
46522579 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 140 - 282
Target Start/End: Complemental strand, 46525819 - 46525677
Alignment:
| Q |
140 |
gtttaacttgaaagagtatatccatggaggagggttcaaggaagatgtgccgaatttggaagaagtgattattcaaaaaggagttgctcacttcaacaat |
239 |
Q |
| |
|
|||||||||||| |||||||||||| ||||| | |||||||||||||||| ||||||||| ||||||||| ||||||||||||||||||||||||||||| |
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| T |
46525819 |
gtttaacttgaaggagtatatccattgaggacgattcaaggaagatgtgctgaatttggaggaagtgattgttcaaaaaggagttgctcacttcaacaat |
46525720 |
T |
|
| Q |
240 |
caagaagctgaagaggaaatcagtaattacatttacgaattca |
282 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46525719 |
caagaagctgaagaggaaatcagtaattacatttacgaattca |
46525677 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 56 - 294
Target Start/End: Complemental strand, 46464274 - 46464032
Alignment:
| Q |
56 |
ggagctaacggcaccatggactggagtgaaaatcaaggtgcctgtgaaattcataacgggtgagttagacatggtgtacaactcgtttaacttgaaagag |
155 |
Q |
| |
|
|||||| || || ||||||||||||||||||| | |||||| ||||||||||| || |||||| |||| |||||||||| ||| | | |||| ||| |
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|
| T |
46464274 |
ggagctcacagctccatggactggagtgaaaaccttggtgccagtgaaattcattacaggtgagctagatatggtgtacacttcgctaggcatgaaggag |
46464175 |
T |
|
| Q |
156 |
tatatc----catggaggagggttcaaggaagatgtgccgaatttggaagaagtgattattcaaaaaggagttgctcacttcaacaatcaagaagctgaa |
251 |
Q |
| |
|
||||| ||||||||||| | ||||||||||| |||||||| || ||||||||| | ||||||||||| | |||||| || ||||||||||| | | |
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|
| T |
46464174 |
tatatatatacatggaggaggaatgaaggaagatgtaccgaatttagaggaagtgattgtacaaaaaggagtgggtcactttaataatcaagaagcagca |
46464075 |
T |
|
| Q |
252 |
gaggaaatcagtaattacatttacgaattcatcatgaagttct |
294 |
Q |
| |
|
|| ||||||||||| ||||| ||||||||||| ||||||||| |
|
|
| T |
46464074 |
gaagaaatcagtaaacacattcacgaattcatcctgaagttct |
46464032 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 174 - 296
Target Start/End: Complemental strand, 46481546 - 46481424
Alignment:
| Q |
174 |
ttcaaggaagatgtgccgaatttggaagaagtgattattcaaaaaggagttgctcacttcaacaatcaagaagctgaagaggaaatcagtaattacattt |
273 |
Q |
| |
|
|||||| | |||||||| |||||||| |||||| |||| |||||||| || |||||||||||||| |||||||||| ||||||||||||||| |||||| |
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|
| T |
46481546 |
ttcaagaacgatgtgccaaatttggaggaagtggttatacaaaaaggtgtggctcacttcaacaaccaagaagctgctgaggaaatcagtaatcacattt |
46481447 |
T |
|
| Q |
274 |
acgaattcatcatgaagttctga |
296 |
Q |
| |
|
| || || |||| |||||||||| |
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|
| T |
46481446 |
atgattttatcaagaagttctga |
46481424 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 174 - 292
Target Start/End: Complemental strand, 46492807 - 46492689
Alignment:
| Q |
174 |
ttcaaggaagatgtgccgaatttggaagaagtgattattcaaaaaggagttgctcacttcaacaatcaagaagctgaagaggaaatcagtaattacattt |
273 |
Q |
| |
|
|||||| |||||||||| |||||||| ||||| |||| || |||| || |||||||||||||| |||||||||| ||||| || || ||| |||||| |
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|
| T |
46492807 |
ttcaagaaagatgtgcccaatttggaggaagttgttatacaggaaggtgtggctcacttcaacaaccaagaagctgctgaggatattagcaatcacattt |
46492708 |
T |
|
| Q |
274 |
acgaattcatcatgaagtt |
292 |
Q |
| |
|
| || || |||| |||||| |
|
|
| T |
46492707 |
atgattttatcaagaagtt |
46492689 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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