View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9089_low_8 (Length: 286)
Name: NF9089_low_8
Description: NF9089
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9089_low_8 |
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Alignment Details
Target: chr2 (Bit Score: 237; Significance: 1e-131; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 15 - 270
Target Start/End: Original strand, 3824958 - 3825214
Alignment:
| Q |
15 |
tcacgttaccttgaatgggaagatactaatattcatcacatttgattttaatcaattaatgtataagattatattgcacggataagaaaacatatttagg |
114 |
Q |
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| T |
3824958 |
tcacgttaccttgtatgggaagatactaatattcatcacatttgattttaatcaattcatgtataagattatattgtacggataagaaaacatatttagg |
3825057 |
T |
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| Q |
115 |
catgtaagggctcactttgggtagacagaaaaattgaagcaattaaaactgctcaatttggttggatttgttttttgt-cgtattcacgaaatctaaaac |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
3825058 |
catgtaagggctcactttgggtagacagaaaaattgaagcaattaaaactgctcaatttggttggatttgttttttgtacgtattcacgaaatctaaaac |
3825157 |
T |
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| Q |
214 |
aaatcaaattgatagtaaggacttcaagtttgatattttgctacaccgacaatattc |
270 |
Q |
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| T |
3825158 |
aaatcaaattgatagtaaggacttcaagtttgatattttgctacaccgacaatattc |
3825214 |
T |
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