View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9090_high_11 (Length: 496)
Name: NF9090_high_11
Description: NF9090
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9090_high_11 |
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| [»] scaffold0317 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 321; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 57 - 477
Target Start/End: Original strand, 54425164 - 54425574
Alignment:
| Q |
57 |
gaccaatttgatattttatagttatatatgaaactctacaaaaac--ccgtgcatcgcacgtgttggattggagtctaaaaatgatctatctattactag |
154 |
Q |
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| T |
54425164 |
gaccaatttgatattttatact---atatgaaactctacaaaaaaaaccgtgcatcgcacgtgttgga-----gtctaaaaat----tatctattacaat |
54425251 |
T |
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| Q |
155 |
ggacgcagttccgtctaaatccaaacaatagaaggaacaaaaatggaagaagaaagcgaagccgagtggggcgagttgactcgtgagtgcctcatcaata |
254 |
Q |
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| T |
54425252 |
ggacgcagttccgtctaaatccaaacaatagaaggaacaaaaatggaagtagaaagcgaagccgagtggggcgagttgactcgtgagtgcctcatcaaca |
54425351 |
T |
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| Q |
255 |
tcctatctcgactcagctttgacgatcaatggcgtggtgcgatgcttgtttgcaaatcatggttcaacgccttcaaggaagaaccatctcttcactctgt |
354 |
Q |
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| T |
54425352 |
tcctatctcgactcagctttgaagatcaatggcgcggttcgttgcttgtttgcaaatcatggttcaacgccttcaaggaagaaccatctcttcactctgt |
54425451 |
T |
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| Q |
355 |
attcaacctcgatccttacttcgacaagccactcgaatcacctcgctggtggaccctccaattcgaatctcaaattgattccatgcttcgttctatcgtt |
454 |
Q |
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| T |
54425452 |
attcaacctcgatccttacttcgacaagccactcgaatcacctcgctggtggaccctccaattcgaatctcaaattgattccatgcttcgttctatcgtt |
54425551 |
T |
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| Q |
455 |
caatggactcatatcttcctcac |
477 |
Q |
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| T |
54425552 |
caatggactcatatcttcctcac |
54425574 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 221 - 376
Target Start/End: Complemental strand, 54430430 - 54430275
Alignment:
| Q |
221 |
tggggcgagttgactcgtgagtgcctcatcaatatcctatctcgactcagctttgacgatcaatggcgtggtgcgatgcttgtttgcaaatcatggttca |
320 |
Q |
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| T |
54430430 |
tggggcgagttatctcgagattgcctcatcaacatcttcattcgactcaccgttgaagatcaatggcgcggtgcaatgcttgtatgtaaatcatggttca |
54430331 |
T |
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| Q |
321 |
acgccttcaaggaagaaccatctcttcactctgtattcaacctcgatccttacttc |
376 |
Q |
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| T |
54430330 |
gtgcctttaaggaagaaccttctcttcactctttattcaatctcgacccttacttc |
54430275 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 387 - 476
Target Start/End: Complemental strand, 54430240 - 54430151
Alignment:
| Q |
387 |
tcgaatcacctcgctggtggaccctccaattcgaatctcaaattgattccatgcttcgttctatcgttcaatggactcatatcttcctca |
476 |
Q |
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| T |
54430240 |
tcgaatcacctcgctagtggaccctccaatttgagtccaagatcgattccatgcttcaatctatcgttcagtggactcatatctttctca |
54430151 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 20 - 55
Target Start/End: Original strand, 54424945 - 54424980
Alignment:
| Q |
20 |
gaaggacggtctggaccacctctacgattaataata |
55 |
Q |
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| T |
54424945 |
gaaggacggtctggaccacctctacgattaataata |
54424980 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 39 - 115
Target Start/End: Original strand, 37381841 - 37381911
Alignment:
| Q |
39 |
ctctacgattaataatatgaccaatttgatattttatagttatatatgaaactctacaaaaacccgtgcatcgcacg |
115 |
Q |
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| T |
37381841 |
ctctacgattaataatatagtcaatttgatattttat------atatgaaactctacaaaaacacgtgcatcgcacg |
37381911 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0317 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: scaffold0317
Description:
Target: scaffold0317; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 74 - 119
Target Start/End: Complemental strand, 19833 - 19789
Alignment:
| Q |
74 |
atagttatatatgaaactctacaaaaacccgtgcatcgcacgtgtt |
119 |
Q |
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| T |
19833 |
atagttatatatgaaactctac-aaaacctgtgcatcgcacgtgtt |
19789 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 78 - 115
Target Start/End: Complemental strand, 30694392 - 30694356
Alignment:
| Q |
78 |
ttatatatgaaactctacaaaaacccgtgcatcgcacg |
115 |
Q |
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| T |
30694392 |
ttatatatgaaactctac-aaaacccgtgcatcgcacg |
30694356 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 39 - 75
Target Start/End: Complemental strand, 15107465 - 15107429
Alignment:
| Q |
39 |
ctctacgattaataatatgaccaatttgatattttat |
75 |
Q |
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| T |
15107465 |
ctctacgattaataatatagccaatttgatattttat |
15107429 |
T |
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