View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9090_high_20 (Length: 387)
Name: NF9090_high_20
Description: NF9090
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9090_high_20 |
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Alignment Details
Target: chr3 (Bit Score: 210; Significance: 1e-115; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 146 - 363
Target Start/End: Complemental strand, 11899413 - 11899196
Alignment:
| Q |
146 |
cacgcctaagctctaggaaacgcagttcccatggcgtctaatctaatcaaaggaatgagatcataaggtggggttgtatgtcttgcaaactcttcgtttg |
245 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11899413 |
cacgcctaagctctaggaaacgcagttcccatggcgtctaatctaatcaaaggaatgagatcataaggtggggttgtatgtcttgcaaactcttcgtttg |
11899314 |
T |
|
| Q |
246 |
aaattgcaccaagctttgccctgaaatctgctcattggtttccttctctatgacaatgttgtatggagaagtttgttgataatagcaagtcttgaatgtc |
345 |
Q |
| |
|
|||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11899313 |
aaattgcaccaagctttgccatgaaatctgcacattggtttccttctctatgacaatgttgtatggagaagtttgttgataatagcaagtcttgaatgtc |
11899214 |
T |
|
| Q |
346 |
ttgaattaaaacagcata |
363 |
Q |
| |
|
|||||||||||||||||| |
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|
| T |
11899213 |
ttgaattaaaacagcata |
11899196 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 149 - 360
Target Start/End: Original strand, 26430583 - 26430794
Alignment:
| Q |
149 |
gcctaagctctaggaaacgcagttcccatggcgtctaatctaatcaaaggaatgagatcataaggtggggttgtatgtcttgcaaactcttcgtttgaaa |
248 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||| | | |||||||||| || || | ||| || | ||||||||||| ||| ||| ||| ||| |
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| T |
26430583 |
gcctaagctctagggaacgcagttcccatggcgtcgagccgtatcaaaggaagaagttcttgaggaggagatgtatgtcttgaaaattctgtgttcgaat |
26430682 |
T |
|
| Q |
249 |
ttgcaccaagctttgccctgaaatctgctcattggtttccttctctatgacaatgttgtatggagaagtttgttgataatagcaagtcttgaatgtcttg |
348 |
Q |
| |
|
||||||| ||||||||| ||||||| || ||||| || ||||||| | ||||||| || ||||||||||||||||| | || | ||| ||||||||||| |
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|
| T |
26430683 |
ttgcacctagctttgccatgaaatcagcacattgattcccttctcgaagacaatgatggatggagaagtttgttgacgagagtatgtcatgaatgtcttg |
26430782 |
T |
|
| Q |
349 |
aattaaaacagc |
360 |
Q |
| |
|
||||| ||||| |
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|
| T |
26430783 |
gattaatacagc |
26430794 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 146 - 240
Target Start/End: Complemental strand, 6044452 - 6044358
Alignment:
| Q |
146 |
cacgcctaagctctaggaaacgcagttcccatggcgtctaatctaatcaaaggaatgagatcataaggtggggttgtatgtcttgcaaactcttc |
240 |
Q |
| |
|
||||||||| ||||| |||||||||| ||||||||| ||||| ||||||| || || ||||||||| | | ||||||||| ||||||||||| |
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| T |
6044452 |
cacgcctaaactctaaaaaacgcagttttcatggcgtcgaatctgatcaaagaaaggaaatcataaggatgagatgtatgtctcgcaaactcttc |
6044358 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 206; Significance: 1e-112; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 146 - 363
Target Start/End: Original strand, 23130467 - 23130684
Alignment:
| Q |
146 |
cacgcctaagctctaggaaacgcagttcccatggcgtctaatctaatcaaaggaatgagatcataaggtggggttgtatgtcttgcaaactcttcgtttg |
245 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
23130467 |
cacgcctaagctctaggaaacgcagttcccatggcgtctaatctaatcaaaggaatgagatcataaggtggggttgtatgtcttgcaaactcttcgtttg |
23130566 |
T |
|
| Q |
246 |
aaattgcaccaagctttgccctgaaatctgctcattggtttccttctctatgacaatgttgtatggagaagtttgttgataatagcaagtcttgaatgtc |
345 |
Q |
| |
|
||||||||||||||||| || |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
23130567 |
aaattgcaccaagcttttccatgaaatctgcacattggtttccttctctatgacaatgttgtatggagaagtttgttgataatagcaagtcttgaatgtc |
23130666 |
T |
|
| Q |
346 |
ttgaattaaaacagcata |
363 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
23130667 |
ttgaattaaaacagcata |
23130684 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 18 - 85
Target Start/End: Complemental strand, 31335977 - 31335910
Alignment:
| Q |
18 |
agatcttacgtactctttcagaactttaataaaaccaaaataattcattaattgcatatgacctccaa |
85 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
31335977 |
agatcttacgtactctttcagaactttaataaaaccaaaataattcattaattgcatatgacctccaa |
31335910 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 268 - 363
Target Start/End: Complemental strand, 14762064 - 14761969
Alignment:
| Q |
268 |
gaaatctgctcattggtttccttctctatgacaatgttgtatggagaagtttgttgataatagcaagtcttgaatgtcttgaattaaaacagcata |
363 |
Q |
| |
|
||||||||| |||||||| |||||||| ||||||| || |||| ||||||| ||| | ||| | ||||| |||||||| |||||||||||||| |
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|
| T |
14762064 |
gaaatctgcacattggttcccttctcttagacaatggtgaatggtgaagtttcttgttgatatgatgtctttgatgtcttggattaaaacagcata |
14761969 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 192; Significance: 1e-104; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 146 - 353
Target Start/End: Complemental strand, 18667151 - 18666944
Alignment:
| Q |
146 |
cacgcctaagctctaggaaacgcagttcccatggcgtctaatctaatcaaaggaatgagatcataaggtggggttgtatgtcttgcaaactcttcgtttg |
245 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
18667151 |
cacgcctaagctctaggaaacgcagttcccatggcgtctaatctaatcaaaggaatgagatcataaggtggggttgtatgtcttgcaaactcttcgtttg |
18667052 |
T |
|
| Q |
246 |
aaattgcaccaagctttgccctgaaatctgctcattggtttccttctctatgacaatgttgtatggagaagtttgttgataatagcaagtcttgaatgtc |
345 |
Q |
| |
|
||||||||||||||||| || |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
18667051 |
aaattgcaccaagctttaccatgaaatctgcacattggtttccttctctatgacaatgttgtatggagaagtttgttgataatagcatgtcttgaatgtc |
18666952 |
T |
|
| Q |
346 |
ttgaatta |
353 |
Q |
| |
|
|||||||| |
|
|
| T |
18666951 |
ttgaatta |
18666944 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 149 - 360
Target Start/End: Complemental strand, 53322127 - 53321916
Alignment:
| Q |
149 |
gcctaagctctaggaaacgcagttcccatggcgtctaatctaatcaaaggaatgagatcataaggtggggttgtatgtcttgcaaactcttcgtttgaaa |
248 |
Q |
| |
|
|||||||||| ||| ||| |||||||||||||||| | ||| |||||||||| || |||| ||| || | ||||||||||||||||||| ||| |||| |
|
|
| T |
53322127 |
gcctaagctcgagggaacacagttcccatggcgtcgagtcttatcaaaggaagaagttcatgaggaggagatgtatgtcttgcaaactctatgttcgaaa |
53322028 |
T |
|
| Q |
249 |
ttgcaccaagctttgccctgaaatctgctcattggtttccttctctatgacaatgttgtatggagaagtttgttgataatagcaagtcttgaatgtcttg |
348 |
Q |
| |
|
||||||||||||||||| ||||||| || ||||| || ||||||| | ||||||| || |||||||||||||||||| | || ||||||||||||||||| |
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|
| T |
53322027 |
ttgcaccaagctttgccatgaaatcagcacattgattcccttctcgaagacaatgatggatggagaagtttgttgatgagagtaagtcttgaatgtcttg |
53321928 |
T |
|
| Q |
349 |
aattaaaacagc |
360 |
Q |
| |
|
||||| |||||| |
|
|
| T |
53321927 |
aattagaacagc |
53321916 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 150 - 239
Target Start/End: Original strand, 28390461 - 28390551
Alignment:
| Q |
150 |
cctaagctctaggaaac-gcagttcccatggcgtctaatctaatcaaaggaatgagatcataaggtggggttgtatgtcttgcaaactctt |
239 |
Q |
| |
|
|||||||||||||||| |||||||||||| |||| ||||| |||||||||| |||||||||||| || | ||||||||| |||||||||| |
|
|
| T |
28390461 |
cctaagctctaggaaattgcagttcccatgacgtcgaatctgatcaaaggaaggagatcataaggaggagatgtatgtctcgcaaactctt |
28390551 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 146 - 342
Target Start/End: Complemental strand, 20287105 - 20286909
Alignment:
| Q |
146 |
cacgcctaagctctaggaaacgcagttcccatggcgtctaatctaatcaaaggaatgagatcataaggtggggttgtatgtcttgcaaactcttcgtttg |
245 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20287105 |
cacgcctaagctctaggaaacgcagttcccatggcgtctaatctaatcaaaggaatgagatcataaggtggggttgtatgtcttgcaaactcttcgtttg |
20287006 |
T |
|
| Q |
246 |
aaattgcaccaagctttgccctgaaatctgctcattggtttccttctctatgacaatgttgtatggagaagtttgttgataatagcaagtcttgaat |
342 |
Q |
| |
|
|||||||| ||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20287005 |
aaattgcatcaagctttgccatgaaatctgcacattggtttccttctctatgacaatgttgtatggagaagtttgttgataatagcaagtcttgaat |
20286909 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 158; Significance: 6e-84; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 158; E-Value: 6e-84
Query Start/End: Original strand, 146 - 363
Target Start/End: Original strand, 14651562 - 14651779
Alignment:
| Q |
146 |
cacgcctaagctctaggaaacgcagttcccatggcgtctaatctaatcaaaggaatgagatcataaggtggggttgtatgtcttgcaaactcttcgtttg |
245 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||| |||| |||||||||||||||||| |||||| |
|
|
| T |
14651562 |
cacgcctaagctctaggaaacgcagttcccatggcgtctaatcttatcaaaggaagaagatcataaggaggggctgtatgtcttgcaaactcaccgtttg |
14651661 |
T |
|
| Q |
246 |
aaattgcaccaagctttgccctgaaatctgctcattggtttccttctctatgacaatgttgtatggagaagtttgttgataatagcaagtcttgaatgtc |
345 |
Q |
| |
|
|| ||||||||| ||||||| ||||||| || ||||| |||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
14651662 |
aatttgcaccaatctttgccatgaaatccgcacattgatttccttctctaagacaatgttgtatggagaagtttgttgagaatagcaagtcttgaatgtc |
14651761 |
T |
|
| Q |
346 |
ttgaattaaaacagcata |
363 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
14651762 |
ttgaattaaaacagcata |
14651779 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 72; Significance: 1e-32; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 149 - 356
Target Start/End: Original strand, 3688096 - 3688303
Alignment:
| Q |
149 |
gcctaagctctaggaaacgcagttcccatggcgtctaatctaatcaaaggaatgagatcataaggtggggttgtatgtcttgcaaactcttcgtttgaaa |
248 |
Q |
| |
|
|||||||||| ||| |||||||||||||||||||| | || |||||||||| || |||| ||| || | ||||||||||| ||||||| ||| ||| |
|
|
| T |
3688096 |
gcctaagctcgagggaacgcagttcccatggcgtcgagccttatcaaaggaagaagttcatgaggaggagatgtatgtcttgtaaactctgtgttcgaat |
3688195 |
T |
|
| Q |
249 |
ttgcaccaagctttgccctgaaatctgctcattggtttccttctctatgacaatgttgtatggagaagtttgttgataatagcaagtcttgaatgtcttg |
348 |
Q |
| |
|
||||||||||||||||| ||||||| || ||||| || ||||||| | ||||||| || ||||||||||||||||| | || | ||||| ||||||||| |
|
|
| T |
3688196 |
ttgcaccaagctttgccatgaaatcagcacattgattcccttctcgaagacaatgatggatggagaagtttgttgacgagagtatgtctttaatgtcttg |
3688295 |
T |
|
| Q |
349 |
aattaaaa |
356 |
Q |
| |
|
||||||| |
|
|
| T |
3688296 |
gattaaaa |
3688303 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 268 - 360
Target Start/End: Original strand, 25787299 - 25787391
Alignment:
| Q |
268 |
gaaatctgctcattggtttccttctctatgacaatgttgtatggagaagtttgttgataatagcaagtcttgaatgtcttgaattaaaacagc |
360 |
Q |
| |
|
||||||||| |||||||| |||||||| |||||| || |||||||||||| ||| | ||| | ||||| |||||||||||||||||||| |
|
|
| T |
25787299 |
gaaatctgcacattggttcccttctcttaaacaatggtgaatggagaagtttcttgttgatatgatgtctttgatgtcttgaattaaaacagc |
25787391 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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