View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9090_high_27 (Length: 301)
Name: NF9090_high_27
Description: NF9090
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9090_high_27 |
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| [»] scaffold0041 (2 HSPs) |
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Alignment Details
Target: scaffold0041 (Bit Score: 121; Significance: 5e-62; HSPs: 2)
Name: scaffold0041
Description:
Target: scaffold0041; HSP #1
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 162 - 286
Target Start/End: Original strand, 85977 - 86101
Alignment:
| Q |
162 |
ttagtaaaagataaaaacaaacacgtaaacacaaaatgctgttttccattttattcgtgtgcatcggtgtctaatatatattctatagaatccctatttg |
261 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
85977 |
ttagtaaaagataaaaacaaacacgtaaacacacaatgctgttttccattttattcgtgtgcatcggtgtctaatatatattctatagaatccctatttg |
86076 |
T |
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| Q |
262 |
aacgccaacattcaccgtaccaagt |
286 |
Q |
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| T |
86077 |
aacgccaacattcaccgtaccaagt |
86101 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0041; HSP #2
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 10 - 115
Target Start/End: Original strand, 85826 - 85931
Alignment:
| Q |
10 |
ggtgttggagttaccaattttaatannnnnnncagtcaaacaagaacatgtagactatttaattttaatccaaatttataccatatagatcttgggaaaa |
109 |
Q |
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||||||||||||||||||||||||| ||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
85826 |
ggtgttggagttaccaattttaatatttttttcagtcgaacaagaacacgtagactatttaattttaatccaaatttataccatatagatcttgggaaaa |
85925 |
T |
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| Q |
110 |
ttgtat |
115 |
Q |
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|||||| |
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| T |
85926 |
ttgtat |
85931 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 121; Significance: 5e-62; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 162 - 286
Target Start/End: Complemental strand, 40880306 - 40880182
Alignment:
| Q |
162 |
ttagtaaaagataaaaacaaacacgtaaacacaaaatgctgttttccattttattcgtgtgcatcggtgtctaatatatattctatagaatccctatttg |
261 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40880306 |
ttagtaaaagataaaaacaaacacgtaaacacacaatgctgttttccattttattcgtgtgcatcggtgtctaatatatattctatagaatccctatttg |
40880207 |
T |
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| Q |
262 |
aacgccaacattcaccgtaccaagt |
286 |
Q |
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||||||||||||||||||||||||| |
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| T |
40880206 |
aacgccaacattcaccgtaccaagt |
40880182 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 10 - 115
Target Start/End: Complemental strand, 40880457 - 40880352
Alignment:
| Q |
10 |
ggtgttggagttaccaattttaatannnnnnncagtcaaacaagaacatgtagactatttaattttaatccaaatttataccatatagatcttgggaaaa |
109 |
Q |
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||||||||||||||||||||||||| ||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40880457 |
ggtgttggagttaccaattttaatatttttttcagtcgaacaagaacacgtagactatttaattttaatccaaatttataccatatagatcttgggaaaa |
40880358 |
T |
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| Q |
110 |
ttgtat |
115 |
Q |
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|||||| |
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| T |
40880357 |
ttgtat |
40880352 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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