View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9090_high_34 (Length: 228)
Name: NF9090_high_34
Description: NF9090
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9090_high_34 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 1 - 228
Target Start/End: Complemental strand, 25458011 - 25457784
Alignment:
| Q |
1 |
taatctttgtaatcactcagtataccattgtgcaagccatttccagtgagatgcatccaagctatgatagaaaccatcctctctcacagaccagtaaatg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||| |
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| T |
25458011 |
taatctttgtaatcactcagtataccattgtgcaagccatttccagtgagatgcatccaagctatggtagaaaccatcctgtctcacagaccagtaaatg |
25457912 |
T |
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| Q |
101 |
gttgaatgatctttgtccctattttctttatacacctcccaaccaaaagtgaaatacctagaccatgaagcatcacactcccaactttgaccaacttgga |
200 |
Q |
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||||||||| | | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25457911 |
gttgaatgaccctcgtccctattttctttatacacctcccaaccaaaagtgaaatacctagaccatgaagcatcacactcccaactttgaccaacttgga |
25457812 |
T |
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| Q |
201 |
atgttcgattgtagtgatctcccacatt |
228 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
25457811 |
atgttcgattgtagtgatctcccacatt |
25457784 |
T |
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