View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9090_high_4 (Length: 691)
Name: NF9090_high_4
Description: NF9090
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9090_high_4 |
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Alignment Details
Target: chr5 (Bit Score: 592; Significance: 0; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 592; E-Value: 0
Query Start/End: Original strand, 4 - 671
Target Start/End: Original strand, 41091350 - 41092020
Alignment:
| Q |
4 |
ctgtgtttcataggtagagagatagagccatgaaataaagttaaaatagagttttcttcgtattgaagtatatctcatgtaacaaggagaacctcaatta |
103 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41091350 |
ctgtgtttcataggtagagagatagagccatgaaataaagttaaaatagagttttcttcgtattgaagtatatctcatgtaacaaggagaacctcaatta |
41091449 |
T |
|
| Q |
104 |
aactaactatgaaacagtaataacataaatgcaacaaatttgttatattcaatatccccctctcaagttggaagatatatgtttgaaatccccaacttgg |
203 |
Q |
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|||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41091450 |
aactaactataaaacagtgataacataaatgcaacaaatttgttatattcaatatccccctctcaagttggaagatatatgtttgaaatccccaacttgg |
41091549 |
T |
|
| Q |
204 |
aaatgagatgcagaataggaattttaggtagtgcttttttccatgggtcagctagttgatgtttggagttgatatgatatgattgtgaacaagtttgagg |
303 |
Q |
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||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
41091550 |
aaatgagatgcagaatagggattttaggtagtgcttttttcaatgggtcagctagttgatgtttggagttgttatgatatgattgtgaacaagtttgagg |
41091649 |
T |
|
| Q |
304 |
aaactagaacaaacatattcccggataaaatcacaatcgaagtcgatatgtttgtaacgttcttggcaaatgggctttgttgcaagttggatgcca-ttt |
402 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||| |
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| T |
41091650 |
aaactagaacaaacatattcccggataaaatcacaatcgaagtcgatatgtttgtaacgttcttggcaaatgggcttagttgcaagttggatgccacttt |
41091749 |
T |
|
| Q |
403 |
gactatcacaaaatacaatgcttgaaccaacaataacatcaaaaagc--tgagtttaagccacagtaactcagatgtgagggcagcaatggtcctgtatt |
500 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||| |||| |
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| T |
41091750 |
gactatcacaaaatacaatgcttgaaccaacaataacatcaaaaagctttgagtttaagccacagtaactcagatgtgagggcagcaatggccctctatt |
41091849 |
T |
|
| Q |
501 |
cagactctgcagaagagcgagcaacaatagtttacttcttcggtttccaagctatcaagaaatatgcagtaagtggttgtggatttttaagaaacttggc |
600 |
Q |
| |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||| |
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| T |
41091850 |
cagcctctgcagaagagcgagcaacaatagtttacttcttcggtttccaagctatcaagaaatatgcaataagtggttgtgaatttttaagaaacttggc |
41091949 |
T |
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| Q |
601 |
agcttccccgatcggcatctggataatataagtaaattggggaatggagttaacatcagttcggttcatcg |
671 |
Q |
| |
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| T |
41091950 |
agcttccccgatcagcgtctcgataatataagtaaaatggggaatggagttaacatcagttcggttcatcg |
41092020 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 223; E-Value: 1e-122
Query Start/End: Original strand, 27 - 372
Target Start/End: Original strand, 41101475 - 41101820
Alignment:
| Q |
27 |
agagccatgaaataaagttaaaatagagttttcttcgtattgaagtatatctcatgtaacaaggagaacctcaattaaactaactatgaaacagtaataa |
126 |
Q |
| |
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||||||||||| |||||| |||| ||||||||||||||||||||||||||||||| ||||||| |||||| |||||||| |||||| |||||||||||| |
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| T |
41101475 |
agagccatgaataaaagttgaaatcgagttttcttcgtattgaagtatatctcatgcaacaaggtgaacctaaattaaaccaactataaaacagtaataa |
41101574 |
T |
|
| Q |
127 |
cataaatgcaacaaatttgttatattcaatatccccctctcaagttggaagatata-tgtttgaaatccccaacttggaaatgagatgcagaataggaat |
225 |
Q |
| |
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||||||||||| |||||||||||||||||||||| |||||||||||||||| |||| |||| | ||| |||||||||||||||||||| ||| ||| || |
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| T |
41101575 |
cataaatgcaagaaatttgttatattcaatatcctcctctcaagttggaaggtataatgttcaatatctccaacttggaaatgagatgctgaaaagggat |
41101674 |
T |
|
| Q |
226 |
tttaggtagtgcttttttccatgggtcagctagttgatgtttggagttgatatgatatgattgtgaacaagtttgaggaaactagaacaaacatattccc |
325 |
Q |
| |
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||| ||||||||||||||| |||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
41101675 |
ttt-ggtagtgcttttttcaatgggtaagctagttgatgtttggagctgatatgatatgattgtgaacaagtttgaggaaacaagaacaaacatattcca |
41101773 |
T |
|
| Q |
326 |
ggataaaatcacaatcgaagtcgatatgtttgtaacgttcttggcaa |
372 |
Q |
| |
|
||||||||||||||| ||||| |||||||||| |||||||||||||| |
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|
| T |
41101774 |
ggataaaatcacaattgaagttgatatgtttggaacgttcttggcaa |
41101820 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 173; E-Value: 1e-92
Query Start/End: Original strand, 99 - 557
Target Start/End: Original strand, 41080094 - 41080556
Alignment:
| Q |
99 |
aattaaactaactatg--aaacagtaataacataaatgcaacaaatttgttatattcaatatccccctctcaagttggaagatatatgtttgaaatcccc |
196 |
Q |
| |
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||||||||||||||| ||||||| | |||||||||||||||||| ||||||||| ||||||||| ||| ||||||||||||||||||| | |||||| |
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| T |
41080094 |
aattaaactaactatataaaacagttagaacataaatgcaacaaatatgttatattaaatatcccc-tcttaagttggaagatatatgttcaatatcccc |
41080192 |
T |
|
| Q |
197 |
aacttggaaatgagatgcagaataggaattttaggtagtgcttttttccatgggtcagctagttgatgtttggagttgatatgatatgattgtgaacaag |
296 |
Q |
| |
|
|||| ||||||||||||| ||| ||| |||||||||||||||||| || ||||||||||||||| |||| ||||| | |||| |||||| |||||| |
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|
| T |
41080193 |
aactaggaaatgagatgctgaaaagggattttaggtagtgcttttgtcaatgggtcagctagttcatgtctggagct--tatg---tgattgcgaacaaa |
41080287 |
T |
|
| Q |
297 |
tttgaggaaactagaacaaacatattcccggataaaatcacaatcgaagtcgatatgtttgtaacgttcttggcaaatgggctttgttgcaagttggatg |
396 |
Q |
| |
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|||||||||||||||||||||||||| ||||||||| |||||| | ||||||||||||| ||| |||||||||| |||| || ||||||||||| || |
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| T |
41080288 |
tttgaggaaactagaacaaacatatttttggataaaatgacaatcaatgtcgatatgtttggaacattcttggcaagtggggttatttgcaagttgggtg |
41080387 |
T |
|
| Q |
397 |
cca-tttgactatcacaaaatacaatgcttgaaccaacaataacatcaaaaagctg--------agtttaagccacagtaactcagatgtgagggcagca |
487 |
Q |
| |
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||| ||||||||||||||||||||||||||||| ||||||||||||| ||||||| || || | |||| |||||||||||||||||||||| |
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| T |
41080388 |
ccactttgactatcacaaaatacaatgcttgaatcaacaataacatc-taaagctgtgagtaattgtctatgtcacaataactcagatgtgagggcagca |
41080486 |
T |
|
| Q |
488 |
atggtcctgtattcagactctgcagaagagcgagcaacaatagtttacttcttcggtttccaagctatca |
557 |
Q |
| |
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|||| ||||||||||| |||||| || ||| ||||| || || || |||||| | |||||||||||||| |
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|
| T |
41080487 |
atggccctgtattcagcctctgcggaggagagagcatcaggagcttgcttcttggatttccaagctatca |
41080556 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 385 - 428
Target Start/End: Original strand, 41101817 - 41101861
Alignment:
| Q |
385 |
gcaagttggatgcca-tttgactatcacaaaatacaatgcttgaa |
428 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||| |
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|
| T |
41101817 |
gcaagttggatgccactttgactatcacaaaatacaatgcttgaa |
41101861 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 45; Significance: 3e-16; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 459 - 559
Target Start/End: Complemental strand, 4133490 - 4133390
Alignment:
| Q |
459 |
gccacagtaactcagatgtgagggcagcaatggtcctgtattcagactctgcagaagagcgagcaacaatagtttacttcttcggtttccaagctatcaa |
558 |
Q |
| |
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|||||| |||||||||||||| ||||| ||||| ||||||||| |||||| |||||||||||||||||| || ||||||| ||||||| ||||||| |
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|
| T |
4133490 |
gccacaataactcagatgtgaaggcagaaatggcaatgtattcagcctctgctaaagagcgagcaacaatagcttgcttcttcaatttccaatctatcaa |
4133391 |
T |
|
| Q |
559 |
g |
559 |
Q |
| |
|
| |
|
|
| T |
4133390 |
g |
4133390 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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