View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9090_high_9 (Length: 512)

Name: NF9090_high_9
Description: NF9090
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9090_high_9
NF9090_high_9
[»] chr3 (12 HSPs)
chr3 (223-345)||(34627723-34627845)
chr3 (402-497)||(34627572-34627666)
chr3 (19-113)||(34628142-34628237)
chr3 (224-293)||(54007570-54007639)
chr3 (241-298)||(11075265-11075322)
chr3 (224-293)||(42997393-42997462)
chr3 (233-298)||(51305455-51305520)
chr3 (233-307)||(6178305-6178379)
chr3 (233-295)||(52564541-52564603)
chr3 (232-301)||(23600709-23600778)
chr3 (233-298)||(50559101-50559166)
chr3 (233-293)||(12762583-12762643)
[»] chr8 (3 HSPs)
chr8 (224-291)||(40517366-40517433)
chr8 (237-295)||(24795370-24795428)
chr8 (234-295)||(6182346-6182407)
[»] chr4 (8 HSPs)
chr4 (233-293)||(18767977-18768037)
chr4 (224-298)||(34616669-34616743)
chr4 (233-293)||(14603574-14603634)
chr4 (233-291)||(24990232-24990290)
chr4 (232-298)||(39654940-39655006)
chr4 (224-257)||(40590707-40590740)
chr4 (233-293)||(1140727-1140787)
chr4 (233-293)||(27371258-27371318)
[»] chr7 (5 HSPs)
chr7 (224-291)||(37845259-37845326)
chr7 (235-293)||(20337430-20337488)
chr7 (247-298)||(39110994-39111045)
chr7 (219-300)||(38944900-38944981)
chr7 (233-293)||(3343224-3343283)
[»] scaffold0087 (1 HSPs)
scaffold0087 (224-298)||(53250-53324)
[»] chr5 (2 HSPs)
chr5 (224-298)||(21943585-21943658)
chr5 (222-298)||(33655302-33655378)
[»] chr2 (7 HSPs)
chr2 (233-295)||(43520975-43521037)
chr2 (233-298)||(1907652-1907717)
chr2 (233-293)||(20532356-20532416)
chr2 (233-298)||(5054061-5054126)
chr2 (232-293)||(8427669-8427730)
chr2 (233-293)||(14498900-14498960)
chr2 (233-293)||(36625205-36625265)
[»] chr1 (10 HSPs)
chr1 (231-293)||(29706597-29706659)
chr1 (233-298)||(19947633-19947698)
chr1 (233-295)||(51436662-51436724)
chr1 (232-293)||(31975107-31975167)
chr1 (233-294)||(43769736-43769797)
chr1 (233-293)||(21433294-21433354)
chr1 (239-267)||(27470134-27470162)
chr1 (237-293)||(31433611-31433667)
chr1 (269-301)||(36954800-36954832)
chr1 (233-293)||(43367795-43367855)
[»] scaffold0005 (1 HSPs)
scaffold0005 (233-293)||(213744-213804)
[»] chr6 (2 HSPs)
chr6 (243-290)||(34084526-34084573)
chr6 (224-293)||(30956180-30956249)


Alignment Details
Target: chr3 (Bit Score: 103; Significance: 5e-51; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 223 - 345
Target Start/End: Complemental strand, 34627845 - 34627723
Alignment:
Q  223 aaatatcttattttctttataaatttatggttgtcttataagttgacataaaaataattgttcaaataacataacttttctataaatcatggtacgttta 322  Q
    |||||||||||||||||| |||||||||||||||||||||||||  ||||||||||||||||||||||||| |||||||||||||||||||| |||||||    
T  34627845 aaatatcttattttctttgtaaatttatggttgtcttataagttatcataaaaataattgttcaaataacacaacttttctataaatcatggcacgttta 34627746  T
Q  323 aactcttacactgctttacattg 345  Q
    |||||||||||||||||||||||    
T  34627745 aactcttacactgctttacattg 34627723  T

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Target: chr3; HSP #2
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 402 - 497
Target Start/End: Complemental strand, 34627666 - 34627572
Alignment:
Q  402 atagaaagggaaacagggatctcttaaaaaccaatccattcaagcatcacccggatttggcgtaaatcccacttgattgcttttacattccacagg 497  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  34627666 atagaaagggaaacaaggatctcttaaaaaccaatccattcaagcatca-ccggatttggcgtaaatcccacttgattgcttttacattccacagg 34627572  T

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Target: chr3; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 19 - 113
Target Start/End: Complemental strand, 34628237 - 34628142
Alignment:
Q  19 atatacttgagaatgaatcagttatccttagtttggttgaaatagctttcgtcc-nnnnnnnnntcatgtcctagataataagtgcatttctataa 113  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||          |||||||||| |||||||||||||||||||||    
T  34628237 atatacttgagaatgaatcagttatccttagtttggttgaaatagctttcttccaaaaaaaaaatcatgtcctaaataataagtgcatttctataa 34628142  T

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Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 224 - 293
Target Start/End: Original strand, 54007570 - 54007639
Alignment:
Q  224 aatatcttattttctttataaatttatggttgtcttataagttgacataaaaataattgttcaaataaca 293  Q
    |||||||  ||||||||||||||||||||||||||||||||||| |||| | ||  | ||||||||||||    
T  54007570 aatatctatttttctttataaatttatggttgtcttataagttgtcatacagatggtcgttcaaataaca 54007639  T

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Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 241 - 298
Target Start/End: Complemental strand, 11075322 - 11075265
Alignment:
Q  241 ataaatttatggttgtcttataagttgacataaaaataattgttcaaataacataact 298  Q
    |||||||||||||||||| | |||||| |||| ||||  |||||||||||||||||||    
T  11075322 ataaatttatggttgtctcaaaagttgtcatacaaatggttgttcaaataacataact 11075265  T

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Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 224 - 293
Target Start/End: Original strand, 42997393 - 42997462
Alignment:
Q  224 aatatcttattttctttataaatttatggttgtcttataagttgacataaaaataattgttcaaataaca 293  Q
    |||||||||||||||||||| | || ||||||||||| |||||| |||| |||| | |||| ||||||||    
T  42997393 aatatcttattttctttatacaattttggttgtcttaaaagttgtcatataaatgaatgtttaaataaca 42997462  T

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Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 233 - 298
Target Start/End: Complemental strand, 51305520 - 51305455
Alignment:
Q  233 ttttctttataaatttatggttgtcttataagttgacataaaaataattgttcaaataacataact 298  Q
    |||||||| ||||||||||| ||| | | |||||| ||||||||| |||||||||||| |||||||    
T  51305520 ttttctttgtaaatttatggatgtataaaaagttgtcataaaaatgattgttcaaatatcataact 51305455  T

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Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 233 - 307
Target Start/End: Complemental strand, 6178379 - 6178305
Alignment:
Q  233 ttttctttataaatttatggttgtcttataagttgacataaaaataattgttcaaataacataacttttctataa 307  Q
    ||||||||| |||||||||||||| |   |||||| |||||||||  |||||||||||||| |||| || |||||    
T  6178379 ttttctttacaaatttatggttgtatcgaaagttgtcataaaaatggttgttcaaataacacaactcttttataa 6178305  T

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Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 233 - 295
Target Start/End: Complemental strand, 52564603 - 52564541
Alignment:
Q  233 ttttctttataaatttatggttgtcttataagttgacataaaaataattgttcaaataacata 295  Q
    |||||||| ||||| ||||||||||  |||||||| |||| ||||  ||||||||||||||||    
T  52564603 ttttctttgtaaatctatggttgtcccataagttgtcatagaaatggttgttcaaataacata 52564541  T

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Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 232 - 301
Target Start/End: Original strand, 23600709 - 23600778
Alignment:
Q  232 attttctttataaatttatggttgtcttataagttgacataaaaataattgttcaaataacataactttt 301  Q
    |||||||||||||| || ||||||||| | |||||| |||| ||||   ||||||||||||| |||||||    
T  23600709 attttctttataaaattttggttgtctcaaaagttgtcatataaatggatgttcaaataacacaactttt 23600778  T

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Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 233 - 298
Target Start/End: Complemental strand, 50559166 - 50559101
Alignment:
Q  233 ttttctttataaatttatggttgtcttataagttgacataaaaataattgttcaaataacataact 298  Q
    ||||||||||||||||||||||||| || || ||  || | ||||| |||||||||||||| ||||    
T  50559166 ttttctttataaatttatggttgtcataaaaattatcacataaatagttgttcaaataacacaact 50559101  T

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Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 233 - 293
Target Start/End: Complemental strand, 12762643 - 12762583
Alignment:
Q  233 ttttctttataaatttatggttgtcttataagttgacataaaaataattgttcaaataaca 293  Q
    |||||||| ||||||||||||||||  |||| ||| |||  |||| |||||||||||||||    
T  12762643 ttttctttgtaaatttatggttgtcccataaattgtcatgtaaatgattgttcaaataaca 12762583  T

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Target: chr8 (Bit Score: 44; Significance: 8e-16; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 224 - 291
Target Start/End: Original strand, 40517366 - 40517433
Alignment:
Q  224 aatatcttattttctttataaatttatggttgtcttataagttgacataaaaataattgttcaaataa 291  Q
    |||||||  |||||||| ||||||||||||||||||||||| || ||||||||| |||||||||||||    
T  40517366 aatatctacttttctttgtaaatttatggttgtcttataagatgtcataaaaatgattgttcaaataa 40517433  T

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Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 237 - 295
Target Start/End: Original strand, 24795370 - 24795428
Alignment:
Q  237 ctttataaatttatggttgtcttataagttgacataaaaataattgttcaaataacata 295  Q
    |||||||||||||||||||||| |||||||| || | ||||| ||||||||||||||||    
T  24795370 ctttataaatttatggttgtctcataagttgtcaaacaaatagttgttcaaataacata 24795428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 234 - 295
Target Start/End: Original strand, 6182346 - 6182407
Alignment:
Q  234 tttctttataaatttatggttgtcttataagttgacataaaaataattgttcaaataacata 295  Q
    ||||||||||||||||| ||||||  |||| ||| |||| ||||| ||||||||||||||||    
T  6182346 tttctttataaatttattgttgtccaataaattgtcatacaaatagttgttcaaataacata 6182407  T

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Target: chr4 (Bit Score: 37; Significance: 0.00000000001; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 233 - 293
Target Start/End: Original strand, 18767977 - 18768037
Alignment:
Q  233 ttttctttataaatttatggttgtcttataagttgacataaaaataattgttcaaataaca 293  Q
    |||||||||||||||||||||||||||| |||||  || | ||||||||||| ||||||||    
T  18767977 ttttctttataaatttatggttgtcttaaaagttatcacacaaataattgtttaaataaca 18768037  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 224 - 298
Target Start/End: Original strand, 34616669 - 34616743
Alignment:
Q  224 aatatcttattttctttataaatttatggttgtcttataagttgacataaaaataattgttcaaataacataact 298  Q
    ||||||| |||||||||||||| || ||||||||| | |||||| |||| |||||  ||||||||||||| ||||    
T  34616669 aatatctcattttctttataaaattttggttgtctcaaaagttgtcatataaatagatgttcaaataacacaact 34616743  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 233 - 293
Target Start/End: Original strand, 14603574 - 14603634
Alignment:
Q  233 ttttctttataaatttatggttgtcttataagttgacataaaaataattgttcaaataaca 293  Q
    |||||||||||||||||||||||||| | || ||| |||  |||| |||||||||||||||    
T  14603574 ttttctttataaatttatggttgtctcaaaaattgtcatggaaatgattgttcaaataaca 14603634  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 233 - 291
Target Start/End: Original strand, 24990232 - 24990290
Alignment:
Q  233 ttttctttataaatttatggttgtcttataagttgacataaaaataattgttcaaataa 291  Q
    |||||||| ||||||||||||||||  |||||||| |||| |||| ||| |||||||||    
T  24990232 ttttctttgtaaatttatggttgtcccataagttgtcatacaaatgattattcaaataa 24990290  T

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Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 232 - 298
Target Start/End: Original strand, 39654940 - 39655006
Alignment:
Q  232 attttctttataaatttatggttgtcttataagttgacataaaaataattgttcaaataacataact 298  Q
    ||||||||| ||||||||||||||||||| || ||  |||  ||||| |||||||||||||| ||||    
T  39654940 attttctttgtaaatttatggttgtcttaaaaattatcatctaaatagttgttcaaataacacaact 39655006  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 224 - 257
Target Start/End: Original strand, 40590707 - 40590740
Alignment:
Q  224 aatatcttattttctttataaatttatggttgtc 257  Q
    ||||||| ||||||||||||||||||||||||||    
T  40590707 aatatctaattttctttataaatttatggttgtc 40590740  T

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Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 233 - 293
Target Start/End: Original strand, 1140727 - 1140787
Alignment:
Q  233 ttttctttataaatttatggttgtcttataagttgacataaaaataattgttcaaataaca 293  Q
    |||||||| ||||| ||||||||||  ||||||||  |  |||||||||||||||||||||    
T  1140727 ttttctttgtaaatctatggttgtcacataagttgcgaataaaataattgttcaaataaca 1140787  T

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Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 233 - 293
Target Start/End: Original strand, 27371258 - 27371318
Alignment:
Q  233 ttttctttataaatttatggttgtcttataagttgacataaaaataattgttcaaataaca 293  Q
    |||||||| ||||||||||||||||| |||||||  || | ||||  ||||||||||||||    
T  27371258 ttttctttgtaaatttatggttgtctcataagttctcaaataaattgttgttcaaataaca 27371318  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000005; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 224 - 291
Target Start/End: Original strand, 37845259 - 37845326
Alignment:
Q  224 aatatcttattttctttataaatttatggttgtcttataagttgacataaaaataattgttcaaataa 291  Q
    |||||||  ||||||||||||||||||| |||| |||||||||  |||| ||||||||||| ||||||    
T  37845259 aatatctacttttctttataaatttatgattgttttataagttatcatacaaataattgtttaaataa 37845326  T

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Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 235 - 293
Target Start/End: Original strand, 20337430 - 20337488
Alignment:
Q  235 ttctttataaatttatggttgtcttataagttgacataaaaataattgttcaaataaca 293  Q
    |||||| ||||||||||||| ||| |||||||| |||| ||||| ||||||||||||||    
T  20337430 ttctttgtaaatttatggttatctcataagttgtcatacaaatagttgttcaaataaca 20337488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 247 - 298
Target Start/End: Original strand, 39110994 - 39111045
Alignment:
Q  247 ttatggttgtcttataagttgacataaaaataattgttcaaataacataact 298  Q
    ||||| |||||| |||||||| ||| ||||||||||||||||||||| ||||    
T  39110994 ttatgattgtctcataagttgtcattaaaataattgttcaaataacacaact 39111045  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 219 - 300
Target Start/End: Original strand, 38944900 - 38944981
Alignment:
Q  219 gtacaaatatcttattttctttataaatttatggttgtcttataagttgacataaaaataattgttcaaataacataacttt 300  Q
    |||| ||||| ||||||||||| |||| || || |||||||| |||||| |||| |||| | |||| |||||||| ||||||    
T  38944900 gtactaatattttattttctttgtaaaattttgattgtcttaaaagttgtcatataaatgaatgtttaaataacacaacttt 38944981  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 233 - 293
Target Start/End: Complemental strand, 3343283 - 3343224
Alignment:
Q  233 ttttctttataaatttatggttgtcttataagttgacataaaaataattgttcaaataaca 293  Q
    ||||||||||||||| |||||||||||| |||||| ||   ||||| ||||||||||||||    
T  3343283 ttttctttataaatt-atggttgtcttaaaagttgtcaatcaaatagttgttcaaataaca 3343224  T

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Target: scaffold0087 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0087
Description:

Target: scaffold0087; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 224 - 298
Target Start/End: Complemental strand, 53324 - 53250
Alignment:
Q  224 aatatcttattttctttataaatttatggttgtcttataagttgacataaaaataattgttcaaataacataact 298  Q
    ||||||| ||||||||||||||||| ||||||||| | || ||  |||| |||||| ||||||||||||| ||||    
T  53324 aatatctcattttctttataaatttttggttgtctaaaaacttatcatataaataaatgttcaaataacacaact 53250  T

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Target: chr5 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 224 - 298
Target Start/End: Complemental strand, 21943658 - 21943585
Alignment:
Q  224 aatatcttattttctttataaatttatggttgtcttataagttgacataaaaataattgttcaaataacataact 298  Q
    ||||||||||||||||| |||||| ||||||||| | ||||||| ||| |||||| ||||| |||||||| ||||    
T  21943658 aatatcttattttctttgtaaatt-atggttgtcatgtaagttgtcattaaaatagttgtttaaataacacaact 21943585  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 222 - 298
Target Start/End: Complemental strand, 33655378 - 33655302
Alignment:
Q  222 caaatatcttattttctttataaatttatggttgtcttataagttgacataaaaataattgttcaaataacataact 298  Q
    |||||| || |||||||||||||||||||||||||   | |||||  |||||||||| || ||||||||||| ||||    
T  33655378 caaatacctcattttctttataaatttatggttgtaccaaaagttatcataaaaatagttattcaaataacacaact 33655302  T

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Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 233 - 295
Target Start/End: Original strand, 43520975 - 43521037
Alignment:
Q  233 ttttctttataaatttatggttgtcttataagttgacataaaaataattgttcaaataacata 295  Q
    |||||||| |||||| |||||||||||||| |||| |||  |||| |||||||||||||||||    
T  43520975 ttttctttgtaaattgatggttgtcttataggttgtcatgtaaatgattgttcaaataacata 43521037  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 233 - 298
Target Start/End: Complemental strand, 1907717 - 1907652
Alignment:
Q  233 ttttctttataaatttatggttgtcttataagttgacataaaaataattgttcaaataacataact 298  Q
    |||||||| |||||||||||||||| || |||||| |||  |||| ||||||||||||||| ||||    
T  1907717 ttttctttgtaaatttatggttgtcatacaagttgtcatctaaatgattgttcaaataacacaact 1907652  T

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Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 233 - 293
Target Start/End: Complemental strand, 20532416 - 20532356
Alignment:
Q  233 ttttctttataaatttatggttgtcttataagttgacataaaaataattgttcaaataaca 293  Q
    |||||||||||||||||||||| ||  |||||||  |||| ||||| ||||||||||||||    
T  20532416 ttttctttataaatttatggttatcccataagttatcatacaaatagttgttcaaataaca 20532356  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 233 - 298
Target Start/End: Complemental strand, 5054126 - 5054061
Alignment:
Q  233 ttttctttataaatttatggttgtcttataagttgacataaaaataattgttcaaataacataact 298  Q
    |||| ||||||||||||||||||||| | |||||| |||| ||||| || || |||||||| ||||    
T  5054126 ttttttttataaatttatggttgtctcaaaagttgtcatataaatagttttttaaataacacaact 5054061  T

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Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 232 - 293
Target Start/End: Original strand, 8427669 - 8427730
Alignment:
Q  232 attttctttataaatttatggttgtcttataagttgacataaaaataattgttcaaataaca 293  Q
    |||| ||||||||||||||||||||   | |||||| ||  |||||||||||||||||||||    
T  8427669 atttcctttataaatttatggttgttccaaaagttgccaccaaaataattgttcaaataaca 8427730  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 233 - 293
Target Start/End: Complemental strand, 14498960 - 14498900
Alignment:
Q  233 ttttctttataaatttatggttgtcttataagttgacataaaaataattgttcaaataaca 293  Q
    |||| ||||||||||||| ||||||| |||| ||  |||| |||| |||||||||||||||    
T  14498960 ttttttttataaatttatagttgtctcataaattatcatataaatgattgttcaaataaca 14498900  T

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Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 233 - 293
Target Start/End: Original strand, 36625205 - 36625265
Alignment:
Q  233 ttttctttataaatttatggttgtcttataagttgacataaaaataattgttcaaataaca 293  Q
    |||||| | ||||||||||||||||||| |  ||| |||| |||||||| |||||||||||    
T  36625205 ttttctctgtaaatttatggttgtcttaaatattgtcatacaaataattattcaaataaca 36625265  T

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Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 231 - 293
Target Start/End: Complemental strand, 29706659 - 29706597
Alignment:
Q  231 tattttctttataaatttatggttgtcttataagttgacataaaaataattgttcaaataaca 293  Q
    |||||||||| ||||||||||||| ||||| |||||| || | |||| |||||||||||||||    
T  29706659 tattttctttgtaaatttatggttatcttaaaagttgtcacagaaatgattgttcaaataaca 29706597  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 233 - 298
Target Start/End: Complemental strand, 19947698 - 19947633
Alignment:
Q  233 ttttctttataaatttatggttgtcttataagttgacataaaaataattgttcaaataacataact 298  Q
    ||||||||||||| || ||||||||| | |||||| |||| |||||| ||||||||||||| ||||    
T  19947698 ttttctttataaaattttggttgtctcaaaagttgtcatataaataaatgttcaaataacacaact 19947633  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 233 - 295
Target Start/End: Complemental strand, 51436724 - 51436662
Alignment:
Q  233 ttttctttataaatttatggttgtcttataagttgacataaaaataattgttcaaataacata 295  Q
    |||||||| ||||| |||||||||| ||||||||| ||   |||| |||||||||||||||||    
T  51436724 ttttctttgtaaatctatggttgtcatataagttgtcaaccaaattattgttcaaataacata 51436662  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 232 - 293
Target Start/End: Original strand, 31975107 - 31975167
Alignment:
Q  232 attttctttataaatttatggttgtcttataagttgacataaaaataattgttcaaataaca 293  Q
    ||||||||| ||||| ||| |||||||||||||||  ||| |||||| ||||||||||||||    
T  31975107 attttctttgtaaatctatagttgtcttataagttatcat-aaaatagttgttcaaataaca 31975167  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 233 - 294
Target Start/End: Original strand, 43769736 - 43769797
Alignment:
Q  233 ttttctttataaatttatggttgtcttataagttgacataaaaataattgttcaaataacat 294  Q
    ||||||||||||||| |||||||||| |||||||| ||   |||| ||| ||||||||||||    
T  43769736 ttttctttataaattaatggttgtctcataagttgtcaaccaaatgattattcaaataacat 43769797  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 233 - 293
Target Start/End: Complemental strand, 21433354 - 21433294
Alignment:
Q  233 ttttctttataaatttatggttgtcttataagttgacataaaaataattgttcaaataaca 293  Q
    ||||||||| ||||||||||||||| |  |||||| || | |||| |||||||||||||||    
T  21433354 ttttctttacaaatttatggttgtcctgaaagttgtcacacaaatgattgttcaaataaca 21433294  T

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Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 239 - 267
Target Start/End: Original strand, 27470134 - 27470162
Alignment:
Q  239 ttataaatttatggttgtcttataagttg 267  Q
    |||||||||||||||||||||||||||||    
T  27470134 ttataaatttatggttgtcttataagttg 27470162  T

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Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 237 - 293
Target Start/End: Original strand, 31433611 - 31433667
Alignment:
Q  237 ctttataaatttatggttgtcttataagttgacataaaaataattgttcaaataaca 293  Q
    |||| ||||| ||||||||||| |||||||  |||| ||||| ||||||||||||||    
T  31433611 ctttgtaaatctatggttgtctcataagttatcatacaaatagttgttcaaataaca 31433667  T

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Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 269 - 301
Target Start/End: Original strand, 36954800 - 36954832
Alignment:
Q  269 cataaaaataattgttcaaataacataactttt 301  Q
    ||||||||| |||||||||||||||||||||||    
T  36954800 cataaaaatgattgttcaaataacataactttt 36954832  T

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Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 233 - 293
Target Start/End: Complemental strand, 43367855 - 43367795
Alignment:
Q  233 ttttctttataaatttatggttgtcttataagttgacataaaaataattgttcaaataaca 293  Q
    |||||||| |||||||||||||||  || |||||| || | |||| |||||||||||||||    
T  43367855 ttttctttgtaaatttatggttgttctaaaagttgtcacacaaatgattgttcaaataaca 43367795  T

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Target: scaffold0005 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 233 - 293
Target Start/End: Complemental strand, 213804 - 213744
Alignment:
Q  233 ttttctttataaatttatggttgtcttataagttgacataaaaataattgttcaaataaca 293  Q
    |||||||||||||||||||||||||| | || ||| |||  |||| |||||||||||||||    
T  213804 ttttctttataaatttatggttgtctcaaaaattgtcatggaaatgattgttcaaataaca 213744  T

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Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 243 - 290
Target Start/End: Complemental strand, 34084573 - 34084526
Alignment:
Q  243 aaatttatggttgtcttataagttgacataaaaataattgttcaaata 290  Q
    |||||||||||||||| |||||||| |||| ||||| |||||||||||    
T  34084573 aaatttatggttgtctcataagttgtcatacaaatagttgttcaaata 34084526  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 224 - 293
Target Start/End: Original strand, 30956180 - 30956249
Alignment:
Q  224 aatatcttattttctttataaatttatggttgtcttataagttgacataaaaataattgttcaaataaca 293  Q
    ||||||| ||||||||| ||||| ||||||||||  |||||||  |||| ||||  ||||||||||||||    
T  30956180 aatatctaattttctttgtaaatctatggttgtcccataagttttcatataaatggttgttcaaataaca 30956249  T

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