View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9090_low_10 (Length: 729)
Name: NF9090_low_10
Description: NF9090
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9090_low_10 |
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Alignment Details
Target: chr1 (Bit Score: 575; Significance: 0; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 575; E-Value: 0
Query Start/End: Original strand, 9 - 713
Target Start/End: Original strand, 49690330 - 49691029
Alignment:
| Q |
9 |
agcagagaatttagcaagaagtggatttcaatttcaaaagaaataaatggtggtcaattttagccgcaagtcattgtggccggtgataactacaaattca |
108 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| | |
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| T |
49690330 |
agcagagaatttagcaagaagtggatttcaatttcaaaagaaataaatggtggtcaattttagctgcaagtcattgtggccggtgataactacaaattta |
49690429 |
T |
|
| Q |
109 |
taagacttgtgtggtactcattttccaagtcaactagcgtgtcaatttgcttcgaagaatatatttatgtcgtgcaaattaaaagtgtggaacaaattgt |
208 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49690430 |
caagacttgtgtggtactcattttccaagtcaactagcgtgtcaatttgcttcaaagaatatatttatgtcgtgcaaattaaaagtgtggaacaaattgt |
49690529 |
T |
|
| Q |
209 |
ttaacacacacagttgaatggctttagtttatgttttacattttaggttccttttgttctctcatttaattgtgttactgctacttgtcttaactaggaa |
308 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||| |
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| T |
49690530 |
ttaacacaa----ttgaatggctttagtttatgttttacattttaggttccttttgttctctcatttgactgtgttactgctacttgtcttaactaggaa |
49690625 |
T |
|
| Q |
309 |
aggaaatggacacagtgatgattgtccagaatcatttgattgtggaagtcttgggtttcttaaatacccttttacaacagttgaattcccaagctgtggt |
408 |
Q |
| |
|
||||||||||||||||| |||||||||||| ||||||| |||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
49690626 |
aggaaatggacacagtggtgattgtccagactcatttggttgtggaaatcttgggttttttaaatacccttttacaacagttgaattcccaagctgtggt |
49690725 |
T |
|
| Q |
409 |
gcattggcaattcaaggttgtgataatctcaacaaaactgctatgaagtatgtccagttaatcaaaagtggaaaactcttccaagttaaaaagattgata |
508 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||| |
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| T |
49690726 |
gcattggcaattcaaggttgtgataatctcaacaaaactgctatgaagtatgtccagttaaccaaaagaggaaaactcttccaagttaaaaagattgata |
49690825 |
T |
|
| Q |
509 |
atcactggtccattggcaaccctatttccattattgaccccaatatcaccaagcttttggagaaaaatgcttgtgaggcattcagccatgttaatattac |
608 |
Q |
| |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
49690826 |
atcactggtccattggcaacactatttccattattgaccccaatatcaccaagcttttggagaaaaatgcttgtgaggcattcagctatgttaatattac |
49690925 |
T |
|
| Q |
609 |
actccctccttcctctccttttggaacnnnnnnnnatgaaaaactacataacagctttcaaatgcaaccatacccgaaaattaggcatccaacctccaag |
708 |
Q |
| |
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| T |
49690926 |
cctccctcctcccactccttttggaac-tttttttatgaaaaactacataacagctttcaaatgcaaccatacccgaaaattaggcattcaccctccaag |
49691024 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 259 - 713
Target Start/End: Original strand, 49678949 - 49679395
Alignment:
| Q |
259 |
cttttgttctctcatttaattgtgttactgctacttgtcttaactaggaaaggaaatggacacagtgatgattgtccagaatcatttgattgtggaagtc |
358 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49678949 |
cttttgttctctcatttaattgtgttactgctacttgtcttaactaggaaaggaaatggacacagtgatgattgtccagaatcatttgattgtggaa--- |
49679045 |
T |
|
| Q |
359 |
ttgggtttcttaaatacccttttacaacagttgaattcccaagctgtggtgcattggcaattcaaggttgtgataatctcaacaaaactgctatgaagta |
458 |
Q |
| |
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|| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
49679046 |
-----ttgattaaatacccttttacaacagttgaattcccaagctgtggtacattggcaattcaaggttgtgataatctcaacaaaactgctatgaagca |
49679140 |
T |
|
| Q |
459 |
tgtccagttaatcaaaagtggaaaactcttccaagttaaaaagattgataatcactggtccattggcaaccctatttccattattgaccccaatatcacc |
558 |
Q |
| |
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|||||||||| |||| | ||||||||||| ||||||| ||| |||||||||| | |||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
49679141 |
cgtccagttaaccaaaggaggaaaactctttcaagttacaaacattgataatcgcgggtccattggcaacactatttccattattgaccccaatatcacc |
49679240 |
T |
|
| Q |
559 |
aagcttttggagaaaaatgcttgtgaggcattcagccatgttaatattacactccctccttcctctccttttggaacnnnnnnnnatgaaaaactacata |
658 |
Q |
| |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||| |
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| T |
49679241 |
aagcttttggagaagaatgcttgtgaggcattcagccatgttaatattacactccttccttcctctccttttggaacttttttttatgaaaaactacata |
49679340 |
T |
|
| Q |
659 |
acagctttcaaatgcaaccatacccgaaaattaggcatccaacctccaagtaatt |
713 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
49679341 |
acagctttcaaatgcaaccgtacccgaaaattaggcatccaacctccaagtaatt |
49679395 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 176; E-Value: 2e-94
Query Start/End: Original strand, 100 - 692
Target Start/End: Original strand, 49686170 - 49686739
Alignment:
| Q |
100 |
acaaattcataagacttgtgtggtactcattttccaagtcaacta--gcgtgtcaatttgcttcgaagaatatatttatgtcgtgcaaattaa-aagtgt |
196 |
Q |
| |
|
||||||||| | ||||||||| ||| ||||||||||||||||| ||||||||||| ||||| ||| |||||||||||| ||||||||||| |||||| |
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|
| T |
49686170 |
acaaattcacatgacttgtgtagta---attttccaagtcaactatagcgtgtcaattggcttcaaaggatatatttatgttgtgcaaattaacaagtgt |
49686266 |
T |
|
| Q |
197 |
ggaacaaattgtttaacacacacagttgaatggctttagtttatgttttacattttaggttccttttgttctctcatttaattgtgttactgctacttgt |
296 |
Q |
| |
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|||||||||||| |||| | | | |||||| ||||| ||| ||||| ||||||||||||||||| | |||||||||||||||||| |
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| T |
49686267 |
ggaacaaattgtgaaacagaa----taggatggctctagttcatgcactacat---------cttttgttctctcatttgactgtgttactgctacttgt |
49686353 |
T |
|
| Q |
297 |
cttaactaggaaaggaaatggacacagtgatgattgtccagaatcatttgattgtggaagtcttgggtttcttaaatacccttttacaacagttgaattc |
396 |
Q |
| |
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||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||| || || ||||||||||| |||||||||||| |
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| T |
49686354 |
cttaactagtaaaggaaatggacacagtgatgattgtccagaatcatttgattgtggaaatcttggattggttggctacccttttaccacagttgaattc |
49686453 |
T |
|
| Q |
397 |
ccaagctgtggtgcattggcaattcaaggttgtgataatctcaacaaaactgctatgaagtatgtccagttaatcaaaagtggaaaactcttccaagtta |
496 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||| |||||||||||||||||| ||| | |||||||| | |||| | ||||||| ||| ||||||| |
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|
| T |
49686454 |
ccaaactgtggtgcattggcaattcaaggttgtgacgatctcaacaaaactgctacgaaacacgtccagtttaccaaaggaggaaaacactttcaagtta |
49686553 |
T |
|
| Q |
497 |
aaaagattgataatcactggtccattggcaaccctatttccattattgaccccaatatcaccaagcttttggagaaaaatgcttgtgaggcattcagcca |
596 |
Q |
| |
|
||| ||| | ||| | || | |||| ||||||||||| |||| | ||| |||||||||||||| ||||||||||||| ||||| || ||| | |
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|
| T |
49686554 |
caaacattaaaaatgagcggcc------caacactatttccattgttgatctgaatttcaccaagcttttgcagaaaaatgcttgcgaggcctttagcta |
49686647 |
T |
|
| Q |
597 |
tgttaatattacactccctccttcctctccttttggaacnnnnnnnnatgaaaaactacataacagctttcaaatgcaaccatacccgaaaattag |
692 |
Q |
| |
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|| |||| || ||||||||| |||||||||||||||| |||||| || ||||||||||||||||||||| |||||||| |||||||| |
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|
| T |
49686648 |
tg---atatcactctccctcctccctctccttttggaac-tttttatatgaaagacaacataacagctttcaaatgcagccatacccaaaaattag |
49686739 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 106 - 216
Target Start/End: Original strand, 49678769 - 49678881
Alignment:
| Q |
106 |
tcataagacttgtgtggtactcattttccaagtcaactagcgtgtcaatttgcttcgaagaatatatttatgtcgtgcaaatta--aaagtgtggaacaa |
203 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||| |||||||||| ||| |||| |||| |||||| | ||||||| |||||||||||||| |
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| T |
49678769 |
tcataagacttgtgtggtactcattttacaagtcaactaacgtgtcaattggctcagaaggatatctttatgcactacaaattaagaaagtgtggaacaa |
49678868 |
T |
|
| Q |
204 |
attgtttaacaca |
216 |
Q |
| |
|
|||| | |||||| |
|
|
| T |
49678869 |
attgataaacaca |
49678881 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 11 - 57
Target Start/End: Original strand, 49686094 - 49686140
Alignment:
| Q |
11 |
cagagaatttagcaagaagtggatttcaatttcaaaagaaataaatg |
57 |
Q |
| |
|
||||||||||||||| || ||| |||||||||||||| ||||||||| |
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|
| T |
49686094 |
cagagaatttagcaaaaattgggtttcaatttcaaaacaaataaatg |
49686140 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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