View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9090_low_16 (Length: 628)
Name: NF9090_low_16
Description: NF9090
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9090_low_16 |
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Alignment Details
Target: chr6 (Bit Score: 524; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 524; E-Value: 0
Query Start/End: Original strand, 6 - 613
Target Start/End: Complemental strand, 7347147 - 7346539
Alignment:
| Q |
6 |
agcacagagacccgtaataaattaaaaagatatatatataagtgattgaatgtaaccatatgtattggtatcacgttagtgtgtcagacactggacatgc |
105 |
Q |
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| T |
7347147 |
agcacagagacccgtaataaattaaaaagttatatata--agtgattgaatgtaaccatatgtattggtatcgcgttagtgtgtcagacactagacatgc |
7347050 |
T |
|
| Q |
106 |
cttcaattggaaatgtcgttgtta----gctcataacaactacacagcacacaaatacatggactaaacagaatagattgctaataaccttttaagcact |
201 |
Q |
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|||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
7347049 |
cttcaattggaaatgtcgctgttacatagctcataacaactacacagcacacaaatacatggactaaacagaatagattgctaataacctattaagcact |
7346950 |
T |
|
| Q |
202 |
agcatgacatcgacactgatgtataaacacatgtatcaatgtcgtgttggtttcagacacctggacatatcaaacactagacaactcttcaattacaaac |
301 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
7346949 |
agcatgacatcgacactgacatataaacacatgtatcaatgtcgtgttggtttcagacacctagacatatcaaacactagacaactcttcaattacaaac |
7346850 |
T |
|
| Q |
302 |
atcgcccttacatagctcatagaaactacacaacacaaatacatgaacaaaacaacccatcaaatcaaatctttaacaaaatatacaaagtagattgcac |
401 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| | |
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| T |
7346849 |
atcgcccttacatagctcatagaaactacacaacacaaatacatgaacaaaacaacccatcaaatcaaatctttaacaaaacatacaaagtagattgc-c |
7346751 |
T |
|
| Q |
402 |
atgtcatgacctaaaaagcactaacacggacacggtacatgacactagtacacaccgccacatagacactagtaataattgagaaagatacaagtgatcg |
501 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||| |
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| T |
7346750 |
atgtcatgacctaaaaagcaccaacacggacacggtacatgacactagtacacaccgccacataaccactagtaataattgaaaaagatacaagtgatcg |
7346651 |
T |
|
| Q |
502 |
aatgtaaccacatgtatcgtgccagtgaactggacacacagctacatagctcataacgactacacaaatacattaactatctagtaattcataataacca |
601 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7346650 |
aatgtaaccacatgtatcgtgccagtgaactggacacacagctacatagctcataacgactacacaaatacattaactatctagtaattcataataacca |
7346551 |
T |
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| Q |
602 |
cacaatcaaaac |
613 |
Q |
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| T |
7346550 |
cacaatcaaaac |
7346539 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 464 - 516
Target Start/End: Complemental strand, 8013899 - 8013847
Alignment:
| Q |
464 |
tagacactagtaataattgagaaagatacaagtgatcgaatgtaaccacatgt |
516 |
Q |
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| T |
8013899 |
tagacactagtaataatttgaaaaaatataagtgattgaatgtaaccacatgt |
8013847 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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