View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9090_low_18 (Length: 616)
Name: NF9090_low_18
Description: NF9090
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9090_low_18 |
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Alignment Details
Target: chr3 (Bit Score: 549; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 549; E-Value: 0
Query Start/End: Original strand, 1 - 605
Target Start/End: Complemental strand, 24778570 - 24777966
Alignment:
| Q |
1 |
gttaatcaatttcagggttttagtgttatctaccgcaggatttgtgtgtgctctgttcatgttttggcatctcctttgatgtgttgtcacttatgacttg |
100 |
Q |
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| T |
24778570 |
gttaatcaatttcagggttttagtgttatatactgcaggatttgtgtgtgctctgttcatgttttggcatctcttttgatgtgttgtcacttatgacttg |
24778471 |
T |
|
| Q |
101 |
tgagctattctttggtcaatttcagggttacatgttatcggtcgcatgcttaactggtctatttgattaatttcagggttttggtgttaaattctgtatg |
200 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24778470 |
tgagctagcctttggtcaatttcagggttacatgttatcggtcgcatgcttaactggtctatttgattaatttcagggttttggtgttaaattctgtatg |
24778371 |
T |
|
| Q |
201 |
atttgggtatcctctgttcttgtttgggtatgcttaactgatgtatttgatgaatttaagggttttagtgtttaattctgtaagatttatgtctgctctg |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24778370 |
atttgggtatcctctgttcttgtttgggtatgcttaactgatgtatttgatgaatttaagggttttagtgtttaattctgtaagatttatgtctgctctg |
24778271 |
T |
|
| Q |
301 |
ttcatgttttggtatcatatttgtggtggtatcacttgtgatttattgggtagccattgcggttcatatgttattaatagtgtaatttcctgacttgnnn |
400 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||| |||| |
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| T |
24778270 |
ttcatgttttggtatcatatttgtggtggtatcacttgtgatttattaggtagccattgcggttcatatgttaataatagtgtaatttcctggcttgttt |
24778171 |
T |
|
| Q |
401 |
nnnnngtggttatgtgatgaagcccaagacaagatttctgattttgagatgaagctgatggacattgatagtgagcaccttggaattccagaggctgaat |
500 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24778170 |
tttttgtggttatgtgatgaagcccaagacaagatttctgattttgagatgaagctgatggacattgatagtgagcaccttggaattccagaggctgaat |
24778071 |
T |
|
| Q |
501 |
atgatgccattgttaggatgccatctgctgagtttgctaggatttgcaaagatcttagtagcattggtgacactggtaatcacttttattcatctgttat |
600 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24778070 |
atgatgccattgttaggatgccatctgctgagtttgctaggatttgcaaagatcttagtagcattggtgacactggtaatcacttttattcatctgttat |
24777971 |
T |
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| Q |
601 |
atgat |
605 |
Q |
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| T |
24777970 |
atgat |
24777966 |
T |
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