View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9090_low_19 (Length: 551)
Name: NF9090_low_19
Description: NF9090
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9090_low_19 |
 | |
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Alignment Details
Target: chr8 (Bit Score: 488; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 488; E-Value: 0
Query Start/End: Original strand, 18 - 533
Target Start/End: Complemental strand, 44115229 - 44114714
Alignment:
| Q |
18 |
aaccctttcttctgtttctgcttcaatacaacagcaacaaccacttccttctgaaacagaaacactcaacgaatcccttcaatgggtttcaagaactcat |
117 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
44115229 |
aaccctttcttctgtttctgcttcaatacaacagcaacaaccacttccttctgaaacagaaacactcaacgaaccccttcaatgggtttcaagaactcat |
44115130 |
T |
|
| Q |
118 |
cattgcggcgaattatcttccaacgatatcggcaaaacagttcgtctttgtggctgggttgcacttcacagactccacggtggactcacttttctcaatc |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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|
| T |
44115129 |
cattgcggcgaattatcttccaacgatatcggcaaaacagttcgtctttgtggctgggttgcacttcacagactccatggtggactcacttttctcaatc |
44115030 |
T |
|
| Q |
218 |
ttagagaccataccggcattgttcaggttacaacacttccagatgaatttcctgttgcccattcttttatcaataaccttagattggagtacgtggttgc |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||| |
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|
| T |
44115029 |
ttagagaccataccggcattgttcaggttacaacacttccagatgaatttcctgttgcacattctgctatcaataaccttagattggagtacgtggttgc |
44114930 |
T |
|
| Q |
318 |
aattcaaggcattgttaggcctcgtccaaatcaatcaatcaacaacaagatcaaaaccggcttcatcgagattgctgctaatgatgttcaacttttaaat |
417 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44114929 |
cattcaaggcattgttaggcctcgtccaaatcaatcaatcaacaacaagatcaaaaccggcttcatcgagattgctgctaatgatgttcaacttttaaat |
44114830 |
T |
|
| Q |
418 |
tctgtcaatgcaaagttaccattcttagttactacaactgatcatgccaaagattctcttaaagaggaagtccgtttgaggtaagtcttcctgtcattgc |
517 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
44114829 |
tctgtcaatgcaaagttaccattcttagttactacaactgatcatgccaaagattctcttagagaggaagtccgtttgaggtaagtcttcctgtcattgc |
44114730 |
T |
|
| Q |
518 |
ttatttatatatatat |
533 |
Q |
| |
|
|||||||||||||||| |
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|
| T |
44114729 |
ttatttatatatatat |
44114714 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 485; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 485; E-Value: 0
Query Start/End: Original strand, 18 - 530
Target Start/End: Complemental strand, 50017723 - 50017211
Alignment:
| Q |
18 |
aaccctttcttctgtttctgcttcaatacaacagcaacaaccacttccttctgaaacagaaacactcaacgaatcccttcaatgggtttcaagaactcat |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
50017723 |
aaccctttcttctgtttctgcttcaatacaacagcaacaaccacttccttctgaaacagaaacactcaacgaatcccttcaatgggtttcaagaactcat |
50017624 |
T |
|
| Q |
118 |
cattgcggcgaattatcttccaacgatatcggcaaaacagttcgtctttgtggctgggttgcacttcacagactccacggtggactcacttttctcaatc |
217 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
50017623 |
cattgcggcgaattatcttccaacgatgtcggcaaaacggttcgtctttgtggctgggttgcacttcacagactccacggtggactcacttttctcaatc |
50017524 |
T |
|
| Q |
218 |
ttagagaccataccggcattgttcaggttacaacacttccagatgaatttcctgttgcccattcttttatcaataaccttagattggagtacgtggttgc |
317 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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|
| T |
50017523 |
ttagagaccatacaggcattgttcaggttacaacacttccagatgaatttcctgttgcccattctgctatcaataaccttagattggagtacgtggttgc |
50017424 |
T |
|
| Q |
318 |
aattcaaggcattgttaggcctcgtccaaatcaatcaatcaacaacaagatcaaaaccggcttcatcgagattgctgctaatgatgttcaacttttaaat |
417 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
50017423 |
cattcaaggcattgttaggcctcgtccaaatcaatcaatcaacaacaagatcaaaaccggcttcatcgagattgctgctaatgatgttcaacttttaaat |
50017324 |
T |
|
| Q |
418 |
tctgtcaatgcaaagttaccattcttagttactacaactgatcatgccaaagattctcttaaagaggaagtccgtttgaggtaagtcttcctgtcattgc |
517 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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|
| T |
50017323 |
tctgtcaatgcaaagttaccattcttagttactacaactgatcatgccaaagattctcttagagaggaagtccgtttgaggtaagtcttcctgtcattgc |
50017224 |
T |
|
| Q |
518 |
ttatttatatata |
530 |
Q |
| |
|
||||||||||||| |
|
|
| T |
50017223 |
ttatttatatata |
50017211 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 145; E-Value: 5e-76
Query Start/End: Original strand, 92 - 408
Target Start/End: Complemental strand, 18855403 - 18855087
Alignment:
| Q |
92 |
cccttcaatgggtttcaagaactcatcattgcggcgaattatcttccaacgatatcggcaaaacagttcgtctttgtggctgggttgcacttcacagact |
191 |
Q |
| |
|
|||| |||||| ||||||| ||||| |||||||| ||||||||||| |||||| |||||||||| |||||||||||||| ||||||||||||||||||| |
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|
| T |
18855403 |
ccctccaatggatttcaaggactcaccattgcggtgaattatcttcgaacgatgtcggcaaaaccgttcgtctttgtggttgggttgcacttcacagacg |
18855304 |
T |
|
| Q |
192 |
ccacggtggactcacttttctcaatcttagagaccataccggcattgttcaggttacaacacttccagatgaatttcctgttgcccattcttttatcaat |
291 |
Q |
| |
|
|||||||| | || | ||||||| |||||||||||| ||||||||| ||||||||||||||| || | |||||||||| || || |||||| || |||| |
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|
| T |
18855303 |
ccacggtgaagtcgcctttctcattcttagagaccacaccggcattattcaggttacaacacatctaaatgaatttccagtcgcacattctgctaacaat |
18855204 |
T |
|
| Q |
292 |
aaccttagattggagtacgtggttgcaattcaaggcattgttaggcctcgtccaaatcaatcaatcaacaacaagatcaaaaccggcttcatcgagattg |
391 |
Q |
| |
|
||||| ||| ||||| |||||| | |||||||| |||||||| || |||||| |||||||||||||||||||| |||||||||||||||||| ||| |
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|
| T |
18855203 |
aacctaagacgcgagtatgtggttaccattcaaggtgttgttaggtcttgtccaacccaatcaatcaacaacaagatgaaaaccggcttcatcgaggttg |
18855104 |
T |
|
| Q |
392 |
ctgctaatgatgttcaa |
408 |
Q |
| |
|
|||| ||||| |||||| |
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|
| T |
18855103 |
ctgcaaatgaggttcaa |
18855087 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 82 - 408
Target Start/End: Complemental strand, 18843942 - 18843616
Alignment:
| Q |
82 |
ctcaacgaatcccttcaatgggtttcaagaactcatcattgcggcgaattatcttccaacgatatcggcaaaacagttcgtctttgtggctgggttgcac |
181 |
Q |
| |
|
|||||| ||||||| |||||| ||||||| ||||||||||||||||||||||||||||||||| |||| ||||| |||||||||||||| |||| || || |
|
|
| T |
18843942 |
ctcaaccaatccctccaatggatttcaaggactcatcattgcggcgaattatcttccaacgatgtcggtaaaaccgttcgtctttgtggttgggctgaac |
18843843 |
T |
|
| Q |
182 |
ttcacagactccacggtggactcacttttctcaatcttagagaccataccggcattgttcaggttacaacacttccagatgaatttcctgttgcccattc |
281 |
Q |
| |
|
|||||||| || ||||||| || | ||||||| |||||||||||| ||||||||| ||||||||| |||| || |||||||||||| || || ||||| |
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|
| T |
18843842 |
ttcacagaagcctcggtggagtcgcctttctcattcttagagaccagaccggcattattcaggttaagacacgtctagatgaatttccagtcgcacattc |
18843743 |
T |
|
| Q |
282 |
ttttatcaataaccttagattggagtacgtggttgcaattcaaggcattgttaggcctcgtccaaatcaatcaatcaacaacaagatcaaaaccggcttc |
381 |
Q |
| |
|
| || ||| ||||| ||| ||||| |||| ||| ||||||||| |||||||| ||||| ||| ||||||||||||| || |||| |||||||||||| |
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|
| T |
18843742 |
tgctaacaaaaacctaagacgcgagtatgtggctgccattcaaggcgttgttaggtctcgttcaactcaatcaatcaactacgagatgaaaaccggcttc |
18843643 |
T |
|
| Q |
382 |
atcgagattgctgctaatgatgttcaa |
408 |
Q |
| |
|
|||||| ||||||| ||||| |||||| |
|
|
| T |
18843642 |
atcgaggttgctgcaaatgaggttcaa |
18843616 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 467 - 501
Target Start/End: Complemental strand, 18855022 - 18854988
Alignment:
| Q |
467 |
aagattctcttaaagaggaagtccgtttgaggtaa |
501 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||| |
|
|
| T |
18855022 |
aagattctcttaaagaggaaatccgtttgaggtaa |
18854988 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 163; Significance: 8e-87; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 163; E-Value: 8e-87
Query Start/End: Original strand, 88 - 499
Target Start/End: Complemental strand, 51304417 - 51304000
Alignment:
| Q |
88 |
gaatcccttcaatgggtttcaagaactcatcattgcggcgaattatcttccaacgatatcggcaaaacagttcgtctttgtggctgggttgcacttcaca |
187 |
Q |
| |
|
||||||||| ||||| ||||||| |||||| |||||||||||||||||||||| || ||||| |||||||||| || ||||||||||||||| |||| |
|
|
| T |
51304417 |
gaatcccttgaatggatttcaaggactcatttttgcggcgaattatcttccaacaatgtcggcgaaacagttcgcctctgtggctgggttgcatatcacc |
51304318 |
T |
|
| Q |
188 |
gactccacggtggactcacttttctcaatcttagagaccataccggcattgttcaggttacaacacttccagatgaatttcctgttgcccattcttttat |
287 |
Q |
| |
|
|| ||||||||||||| | |||||||||||||||||||||||||||||| ||||||||| ||||||| | |||||||||| | || |||| | | | |
|
|
| T |
51304317 |
gatcccacggtggactcgcctttctcaatcttagagaccataccggcattattcaggttaaaacacttactcatgaatttccagccgcacattatgctct |
51304218 |
T |
|
| Q |
288 |
caataaccttagattggagtacgtggttgcaattcaaggcattgttaggcctcgtccaaatcaatcaatcaacaacaagatcaaaaccggcttcatcgag |
387 |
Q |
| |
|
||||||| | ||| | ||||| || ||||| |||||||| |||||||| |||||| || |||||||||| ||||||| || ||||||||||||||||| |
|
|
| T |
51304217 |
caataacgtaagactcgagtatgtcgttgccattcaaggtgttgttaggtctcgtctaattcaatcaatccacaacaacatgaaaaccggcttcatcgaa |
51304118 |
T |
|
| Q |
388 |
attgctgctaatgatgttcaacttttaaattctgtcaatgcaaagttaccattcttagttactaca------actgatcatgccaaagattctcttaaag |
481 |
Q |
| |
|
|||| ||| ||||| |||||| | ||||| |||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||| |
|
|
| T |
51304117 |
attgttgcaaatgaggttcaagtgttaaactctgtcaatgcaaagttaccattcttagttaccacacatgatgatgatcatgccaaagattctcttaaag |
51304018 |
T |
|
| Q |
482 |
aggaagtccgtttgaggt |
499 |
Q |
| |
|
||||| || |||||||| |
|
|
| T |
51304017 |
aggaaacccttttgaggt |
51304000 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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