View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9090_low_25 (Length: 497)
Name: NF9090_low_25
Description: NF9090
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9090_low_25 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 462; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 462; E-Value: 0
Query Start/End: Original strand, 1 - 497
Target Start/End: Original strand, 41717052 - 41717549
Alignment:
| Q |
1 |
actaattgtcggccttagccctgaagtccctccccggttatcttccccttaatacgtacaatatttcaagttaattgtcttagttgtttatcaaagtgtg |
100 |
Q |
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| T |
41717052 |
actaattgtcggccttagccctgaagtccctccccggttatcttccccttaatacgtacaatatttcaagttaattgtcttagttgtttatcaaagtgtg |
41717151 |
T |
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| Q |
101 |
tatgagtatgactcggtcgaagaattatatttcaatgtcaaagttcaaatgtcatttaaa-taactgcctttctagttgaaaataatatgaaagtcaaca |
199 |
Q |
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| T |
41717152 |
tatgagtatgactcggtcgaagaattatatttcaatgtcaaagttcaaatgtcataaaaaataactgcctttctagttgaaaataatatgacagtcgaca |
41717251 |
T |
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| Q |
200 |
atactattataatgaagagaaacgaatcacagaacatgacaatagcaatgcacacaaaaatttacctccggaagctttttacggaacactacatccagcc |
299 |
Q |
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| T |
41717252 |
atactattataatgaagagaaacgaatcacagaacatgacaatagcaatgcacacaaaaaattacctccggaagctttttacggaacactacatccagcc |
41717351 |
T |
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| Q |
300 |
gtgcatcaagagtattttcacacacaatctttccatcacgagaagccaacaccaccccaccagagctgaattttccacaaatataatcaggtatgctgaa |
399 |
Q |
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| T |
41717352 |
gtgcatcaagagtattttcacacacaatctttccatcacgagaagccaacaccaccccaccagagctgaattttccacaaatataatcaggtatgctgaa |
41717451 |
T |
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| Q |
400 |
actgatatcgaatattaaagcagctacaaaactaatcaaatgtttagatggtcatcagagaaggctttctcgtgtctcaatgtcaaatcaacacgaaa |
497 |
Q |
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| T |
41717452 |
actgatatcgaatattaaagcagctacacaactaatcaaatgtttagatggtcatcagagaaggctttctcatgtctcaatgtcaaatcaacacgaaa |
41717549 |
T |
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Target: chr5 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 278 - 369
Target Start/End: Complemental strand, 2420937 - 2420846
Alignment:
| Q |
278 |
ttacggaacactacatccagccgtgcatcaagagtattttcacacacaatctttccatcacgagaagccaacaccaccccaccagagctgaa |
369 |
Q |
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|||||||| |||||||||| || |||||||| ||||||||| ||||||||||||||||| |||||||||| ||||| || ||||||||||| |
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| T |
2420937 |
ttacggaatactacatccaaacgcgcatcaagtgtattttcaaacacaatctttccatcatgagaagccaataccacacctccagagctgaa |
2420846 |
T |
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