View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9090_low_3 (Length: 1108)
Name: NF9090_low_3
Description: NF9090
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9090_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 866; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 866; E-Value: 0
Query Start/End: Original strand, 13 - 1091
Target Start/End: Complemental strand, 52836438 - 52835328
Alignment:
| Q |
13 |
cagagacatggacaatgaaaacaactaatcagtaaaagaaaggcaaaaaagctcacaatctggggacattcataatcaatgccagcagcctctatcaatg |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
52836438 |
cagagacatggacaatgaaaacaactaatcagtaaaagaaaggctaaaaagctcacaatctggggacattcataatcaatgccagcagcctctatcattt |
52836339 |
T |
|
| Q |
113 |
t------tttttgtcacgtttcataaccctgtcagccaactttttgtgttcttccaatgttctttcctgaaaaggcagcaataatgaatacacttccttt |
206 |
Q |
| |
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| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52836338 |
tccgacttttttgtcacgtttcataaccctgtcaaccaactttttgtgttcttccaatgttctttcctgaaaaggcagcaataatgaatacacttccttt |
52836239 |
T |
|
| Q |
207 |
ttatacattggcaccatactaacacaaaatacaaaagatgcacttcctcatcacactaaataccttgtcatgtcgttcccattcaatttggagagagtcc |
306 |
Q |
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|||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
52836238 |
ttatacat-ggcaccatactaacacaaaatacaaaagatggacttcctcatcacactaaataccttgtcatgtcgttcccgttcaatttggagagagtcc |
52836140 |
T |
|
| Q |
307 |
agaggcttgtaacgataattgaatcctctccatctacaaagaaaaactttacattttaatttattcttcttcatgaaattcaggaaagaaacaaatcttc |
406 |
Q |
| |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
52836139 |
agaggcttgcaacgataattgaatcctctccatctacaaagaaaaactttacattttaatttattctttttcatgaaattcaggaaagaaacaaatcttc |
52836040 |
T |
|
| Q |
407 |
taaccgtaggcacgacttctaatacaccattagttcaaattcattttgaacacatagttctgttacatgctaccattgttttacaattatcattatatgg |
506 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52836039 |
taaccgtaggcacgacttctaatacaccattagttcaaattcattttgaacacatagttctgttacatgctaccattgttttacaattatcattatatgg |
52835940 |
T |
|
| Q |
507 |
ccttgagccttctttccataacaaactgattgccgacggctttaggtgcttcaagtggcgaggattcttttattggcataattgaacagtttcaactttc |
606 |
Q |
| |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
52835939 |
ccttgagccttctttccataac-aactgattgccgacggctttaggtgcttcaagtggcgagtattcttttattggcataattgaacagtttcaactttc |
52835841 |
T |
|
| Q |
607 |
aagtgtgctcaaaagctaataattgtcctcttctttataaataaatagttgattccc-nnnnnnnnaaacagaattaaacagtatcgatacaaatagcag |
705 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||| |
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| T |
52835840 |
aagtgtgctcaaaagctaataattgtcctcttctttataaataaatagttgattcccttttttttttaacagaattaaacagtatcaatacaaatagcag |
52835741 |
T |
|
| Q |
706 |
tatattgaagtttctctcatatattctctattttcattctttctgatttctaacaaacttaaactgattggccagatgatatgtcctcttacatctt--- |
802 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
52835740 |
tatattgaagtttctctcatatattctctattttcattctttctgatttctaacaaacttaaactgattggcca---gatatgtcctcttacatcttaca |
52835644 |
T |
|
| Q |
803 |
------------aaactgatcgagagctttggtctttttcagacatgtggtggtgtatttggttaaaagatagttttcctaccaattattagagtatagt |
890 |
Q |
| |
|
||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
52835643 |
cacaaggcggggaaaatgatcaagagctttggtctttttcagacatgtggtggtgtatttggttaaaagatagttttcctaccaactattagagtatagt |
52835544 |
T |
|
| Q |
891 |
atctcatctgtttaaaag--tctcatttattttgggagaagggaacaaaataagcatcttgtatagtgcaa-------------gcaactttgacagtat |
975 |
Q |
| |
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||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
52835543 |
atctcatctatttaaaagtctctcatttattttgggagaagggaacaaaataagcatcttgtatagtgcaagcagcttaatcctgcaactttgacagtat |
52835444 |
T |
|
| Q |
976 |
catcgaattatgcaaccataatcataaagatatttattggatatctagagggatagataagcttttgtgctgatttacctttcctttcaaataattctag |
1075 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52835443 |
catcgaattatgcaaccataatcataaagatatttattggatatctagagggatagataagcttttgtgctgatttacctttcctttcaaataattctag |
52835344 |
T |
|
| Q |
1076 |
ttaaaccccacccaag |
1091 |
Q |
| |
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|||||||||||||||| |
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| T |
52835343 |
ttaaaccccacccaag |
52835328 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 130; Significance: 8e-67; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 130; E-Value: 8e-67
Query Start/End: Original strand, 20 - 402
Target Start/End: Original strand, 48967517 - 48967904
Alignment:
| Q |
20 |
atggacaatgaaaacaactaatcagtaaaagaaaggc-aaaaaagctcacaatctggggacattcataatcaatgccagcagcctctatcaat------- |
111 |
Q |
| |
|
|||||| || |||||||||||||||| |||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||| | |
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| T |
48967517 |
atggactatcaaaacaactaatcagtcaaagaaaggcgaaaaaagctcacaatctcaggacattcataatcaatgccagcagcctctatctttttacgtc |
48967616 |
T |
|
| Q |
112 |
gttttttgtcacgtttcataaccctgtcagccaactttttgtgttcttccaatgttctttcctgaaaaggcagcaataatgaatacacttcctttttata |
211 |
Q |
| |
|
||||||||||||| |||||||| || ||| ||||||||||||||||||||||||||||||||||||| | ||||||| | |||| || ||||||||| |
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| T |
48967617 |
gttttttgtcacgcttcataactctatcaaccaactttttgtgttcttccaatgttctttcctgaaataataacaataattagtacattttctttttata |
48967716 |
T |
|
| Q |
212 |
cattggcaccatactaacacaaaatacaaaagatgcacttcctcatcacactaaataccttgtcatgtcgttcccattcaatttggagagagtccagagg |
311 |
Q |
| |
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|| |||||| | || || ||||||||| ||| ||||||||||||||||| |||||||||||||| | || | |||||||||||| | ||||| || |
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| T |
48967717 |
ca-gagcaccagagta--actaaatacaaatgatatacttcctcatcacactagataccttgtcatgtagctctcgttcaatttggagtgtgtccaaggg |
48967813 |
T |
|
| Q |
312 |
cttgtaacgataattgaatcctctccatctacaaagaaaaactttacattttaatttattcttcttcatgaaattcaggaaagaaacaaat |
402 |
Q |
| |
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|||||| || |||||||||||| |||||||||||||||||| || |||||||||||| ||||| || | || || |||||||||||| |
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| T |
48967814 |
cttgtagcggtaattgaatcctttccatctacaaagaaaaatcccaccttttaatttatttttcttgattatgttaagaaaagaaacaaat |
48967904 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 1015 - 1060
Target Start/End: Original strand, 48968569 - 48968614
Alignment:
| Q |
1015 |
gatatctagagggatagataagcttttgtgctgatttacctttcct |
1060 |
Q |
| |
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||||||||||||||||| |||| || |||||||||||||||||||| |
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| T |
48968569 |
gatatctagagggataggtaagtttgtgtgctgatttacctttcct |
48968614 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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