View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9090_low_33 (Length: 478)
Name: NF9090_low_33
Description: NF9090
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9090_low_33 |
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Alignment Details
Target: chr7 (Bit Score: 310; Significance: 1e-174; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 91 - 464
Target Start/End: Original strand, 30959921 - 30960299
Alignment:
| Q |
91 |
tatttgaatggcggtaaattagtccatttgtaggtattgtgtaaattatttttgcatttaannnnnnnn-agggactttgtcaaagactaaatgttgtat |
189 |
Q |
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| T |
30959921 |
tatttgaatggcggtaaattagtccatttgtaggtattgtgtaaattatttttgcatttaatttttttttagggactttgtcaaagactaaatgttgtat |
30960020 |
T |
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| Q |
190 |
ttcaaattagcatttaaaaaacttactatcagtagactattttaaagaaagaactaaacatggtttcattttaaaatactattgtgaaactacattgatt |
289 |
Q |
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| T |
30960021 |
ttcaaattagcatttaaaaaacttactatctgtagactattttaaagaaagaactaaacatggtttcattttaaaatactattgtgaaactacattgatt |
30960120 |
T |
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| Q |
290 |
gattgtatatttcatgcttttcttcagg----gtaatagagaaaatgttcttcctttatcctggaaggatttaagagcatcgtctttgaccaagaacgat |
385 |
Q |
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| T |
30960121 |
gattgtatatttcatgctttacttcagggtacgtaatagagaaaatgttcttcctttatcctggaaggatttaagagcatcgtctttgacctggaacgat |
30960220 |
T |
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| Q |
386 |
tttatacgttacacacgtgacagtgtagttaacattcctccaaaatatcatggggccttactcatactgtgtggtagtt |
464 |
Q |
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| T |
30960221 |
tttatacattacacacgtgacagtgtagttaacattcctccaaaatatcatggggccttactcatactgtgtggtagtt |
30960299 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 7 - 48
Target Start/End: Original strand, 30959833 - 30959874
Alignment:
| Q |
7 |
gtagattatactaaccaactttatataatgatattatttcga |
48 |
Q |
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| T |
30959833 |
gtagaatatactaaccaactttatataatgatattatttcga |
30959874 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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