View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9090_low_34 (Length: 457)
Name: NF9090_low_34
Description: NF9090
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9090_low_34 |
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Alignment Details
Target: chr1 (Bit Score: 427; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 427; E-Value: 0
Query Start/End: Original strand, 1 - 439
Target Start/End: Original strand, 6262202 - 6262640
Alignment:
| Q |
1 |
ttgtttcttactgtttcacaatctccaaatgtggagcagctcaggtcaaaaatttggggacacataatgggaaacagaaatttgaatccaaattatgttg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6262202 |
ttgtttcttactgtttcacaatctccaaatgtggagcagctcaggtcaaaaatttggggacacataatgggaaacagaaatttgaatccaaattatgttg |
6262301 |
T |
|
| Q |
101 |
gtcctcggtggataccacaatttgaatgcagaagtgaagctagaaccttggttgttctagatgatgtttggtcacaagcagttcttgaacagcttgtgtg |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6262302 |
ttcctcggtggataccacaatttgaatgcagaagtgaagctagaaccttggttgttctagatgatgtttggtcacaagcagttcttgaacagcttgtgtg |
6262401 |
T |
|
| Q |
201 |
tagaataccaggttgcaagtttgttgttgtttccaggttccaattcccaacaatattctctgcaacttataaggttgaattgctcagtgaagaggatgct |
300 |
Q |
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| T |
6262402 |
tagaataccaggttgcaagtttgttgttgtttccaggttccaattcccaacaatattctctgcaacttataaggttgaattgctcagtgaagaggatgct |
6262501 |
T |
|
| Q |
301 |
ctgtcattattctgtcaccatgcttttggacagaaatcaatccctttaacagctaatgagaatttggtcaaacaggtaatggaacttattcccagcacat |
400 |
Q |
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| T |
6262502 |
ctgtcattattctgtcaccatgcttttggacagaaatcaatccctttaacagctaatgagaatttggtcaaacaggtaatggaacttattcccagcacat |
6262601 |
T |
|
| Q |
401 |
tgattaagtagtttacatttgtttggataaacagcttaa |
439 |
Q |
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| T |
6262602 |
cgattaagtaggttacatttgtttggataaacagcttaa |
6262640 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 1 - 382
Target Start/End: Original strand, 6271302 - 6271683
Alignment:
| Q |
1 |
ttgtttcttactgtttcacaatctccaaatgtggagcagctcaggtcaaaaatttggggacacataatgggaaacagaaatttgaatccaaattatgttg |
100 |
Q |
| |
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|||||| | ||||| || || ||||| |||||||||||||| ||| |||| ||||||||||||||||||||||| ||| ||| ||| | |||||||||| |
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| T |
6271302 |
ttgtttttgactgtctcgcagtctccgaatgtggagcagctgagggcaaagatttggggacacataatgggaaatggaagtttcaataccaattatgttg |
6271401 |
T |
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| Q |
101 |
gtcctcggtggataccacaatttgaatgcaga---agtgaagctagaaccttggttgttctagatgatgtttggtcacaagcagttcttgaacagcttgt |
197 |
Q |
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| T |
6271402 |
ttcctcaatggaagctgcaatatgaatgcagcgggagccaacctcaaatccttgttattctggatgatgtgtggtcaccttctgtgctggagcagcttgt |
6271501 |
T |
|
| Q |
198 |
gtgtagaataccaggttgcaagtttgttgttgtttccaggttccaattcccaacaatattctctgcaacttataaggttgaattgctcagtgaagaggat |
297 |
Q |
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|| |||||| || ||||||||| |||| |||||||||||| |||||| | | || |||||||||||| ||||||||| | |||| ||| |
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| T |
6271502 |
gtttagaatgcctaattgcaagttcattgtggtttccaggttcatattcccca---tttttaatgcaacttataaagttgaattgttggacaaagatgat |
6271598 |
T |
|
| Q |
298 |
gctctgtcattattctgtcaccatgcttttggacagaaatcaatccctttaacagctaatgagaatttggtcaaacaggtaatgg |
382 |
Q |
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|| ||||| || ||||||||||| ||||| |||||||||||||| ||||| |||||||| ||||||| |||||||||||||||| |
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| T |
6271599 |
gcactgtctttgttctgtcaccacgctttcggacagaaatcaattcctttcgcagctaatcagaatttagtcaaacaggtaatgg |
6271683 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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