View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9090_low_37 (Length: 445)

Name: NF9090_low_37
Description: NF9090
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9090_low_37
NF9090_low_37
[»] chr6 (14 HSPs)
chr6 (12-393)||(2398030-2398413)
chr6 (303-419)||(6770828-6770946)
chr6 (295-382)||(32800238-32800325)
chr6 (296-402)||(20208007-20208113)
chr6 (296-402)||(22102030-22102136)
chr6 (303-389)||(28048742-28048828)
chr6 (300-417)||(10008190-10008307)
chr6 (309-382)||(2613359-2613432)
chr6 (344-413)||(22552229-22552298)
chr6 (298-417)||(9213040-9213160)
chr6 (361-425)||(16969637-16969701)
chr6 (303-416)||(5611130-5611244)
chr6 (296-382)||(31490385-31490471)
chr6 (303-371)||(17834977-17835045)
[»] chr5 (22 HSPs)
chr5 (297-420)||(6102823-6102946)
chr5 (312-416)||(16802026-16802130)
chr5 (303-410)||(12036309-12036416)
chr5 (276-416)||(14152445-14152587)
chr5 (307-406)||(20527011-20527111)
chr5 (294-373)||(35290679-35290758)
chr5 (280-417)||(3600108-3600246)
chr5 (298-420)||(6830262-6830385)
chr5 (302-370)||(2033499-2033567)
chr5 (298-416)||(15139166-15139281)
chr5 (303-420)||(30840599-30840716)
chr5 (312-373)||(39034461-39034522)
chr5 (323-392)||(5471101-5471170)
chr5 (303-382)||(2611149-2611229)
chr5 (303-383)||(30293824-30293904)
chr5 (297-367)||(29552373-29552443)
chr5 (295-349)||(35349387-35349441)
chr5 (325-382)||(5002920-5002977)
chr5 (268-371)||(9114930-9115032)
chr5 (295-356)||(35626647-35626708)
chr5 (335-416)||(28511182-28511265)
chr5 (273-344)||(34346953-34347025)
[»] scaffold0299 (1 HSPs)
scaffold0299 (291-419)||(18005-18135)
[»] chr7 (25 HSPs)
chr7 (273-419)||(24937827-24937974)
chr7 (273-417)||(8656291-8656439)
chr7 (295-420)||(39786445-39786571)
chr7 (304-417)||(47537423-47537536)
chr7 (298-389)||(40721412-40721504)
chr7 (303-417)||(21857601-21857715)
chr7 (268-383)||(12810112-12810228)
chr7 (312-370)||(25780245-25780303)
chr7 (297-359)||(27915189-27915251)
chr7 (273-414)||(37532524-37532668)
chr7 (297-373)||(1112147-1112223)
chr7 (294-418)||(30095316-30095441)
chr7 (335-414)||(32279688-32279767)
chr7 (326-389)||(46300699-46300762)
chr7 (297-382)||(22555738-22555823)
chr7 (327-382)||(44845840-44845894)
chr7 (326-419)||(16979937-16980031)
chr7 (303-373)||(19677037-19677107)
chr7 (276-369)||(39386951-39387045)
chr7 (297-350)||(28664542-28664595)
chr7 (303-371)||(47445357-47445425)
chr7 (301-371)||(5871239-5871308)
chr7 (300-382)||(11740359-11740441)
chr7 (296-373)||(8896592-8896669)
chr7 (326-383)||(34993152-34993209)
[»] chr8 (22 HSPs)
chr8 (297-418)||(18131188-18131309)
chr8 (297-395)||(40607318-40607416)
chr8 (303-419)||(10451893-10452011)
chr8 (295-367)||(12958923-12958995)
chr8 (297-393)||(4989717-4989813)
chr8 (298-373)||(27283333-27283407)
chr8 (297-402)||(13873709-13873815)
chr8 (300-382)||(20821923-20822005)
chr8 (298-402)||(15869007-15869111)
chr8 (295-371)||(34085199-34085275)
chr8 (273-419)||(11150918-11151065)
chr8 (303-419)||(20542382-20542499)
chr8 (302-373)||(33621408-33621479)
chr8 (313-420)||(34678218-34678325)
chr8 (297-403)||(44648933-44649040)
chr8 (276-373)||(18200654-18200752)
chr8 (273-344)||(10652500-10652572)
chr8 (344-420)||(30924208-30924284)
chr8 (263-373)||(3347471-3347582)
chr8 (295-382)||(12987634-12987721)
chr8 (298-416)||(35901412-35901531)
chr8 (273-344)||(10654867-10654939)
[»] chr1 (31 HSPs)
chr1 (273-400)||(27513-27641)
chr1 (297-389)||(31160752-31160844)
chr1 (297-402)||(34382628-34382733)
chr1 (318-389)||(28490665-28490736)
chr1 (297-368)||(39283717-39283788)
chr1 (297-371)||(11065862-11065936)
chr1 (303-416)||(13969100-13969214)
chr1 (323-389)||(45438985-45439051)
chr1 (298-419)||(50015771-50015893)
chr1 (303-388)||(48375268-48375353)
chr1 (298-392)||(41936164-41936262)
chr1 (327-410)||(17995194-17995277)
chr1 (273-362)||(35876802-35876892)
chr1 (337-373)||(27160335-27160371)
chr1 (326-425)||(46836188-46836288)
chr1 (335-382)||(27908952-27908999)
chr1 (298-383)||(10226458-10226543)
chr1 (298-383)||(11449092-11449177)
chr1 (297-373)||(8001742-8001818)
chr1 (276-343)||(40430884-40430952)
chr1 (296-402)||(33148125-33148232)
chr1 (298-380)||(52762298-52762383)
chr1 (303-416)||(26890070-26890183)
chr1 (298-371)||(9209273-9209346)
chr1 (350-422)||(33827873-33827945)
chr1 (350-422)||(33840020-33840092)
chr1 (335-419)||(38597475-38597560)
chr1 (303-368)||(47496864-47496928)
chr1 (294-382)||(30627607-30627695)
chr1 (303-371)||(35873495-35873563)
chr1 (297-412)||(46295866-46295982)
[»] chr4 (34 HSPs)
chr4 (273-419)||(2908181-2908328)
chr4 (273-418)||(53142777-53142924)
chr4 (297-420)||(16831096-16831219)
chr4 (303-416)||(55090779-55090892)
chr4 (274-404)||(28299261-28299392)
chr4 (323-411)||(19248892-19248980)
chr4 (298-373)||(45921335-45921410)
chr4 (297-413)||(9119242-9119359)
chr4 (297-382)||(51100021-51100106)
chr4 (312-419)||(5645657-5645764)
chr4 (298-389)||(4860143-4860234)
chr4 (313-417)||(37461778-37461881)
chr4 (323-382)||(32325057-32325116)
chr4 (309-402)||(50101287-50101381)
chr4 (303-371)||(14347124-14347191)
chr4 (298-417)||(20775069-20775189)
chr4 (309-402)||(37992868-37992958)
chr4 (296-419)||(34236175-34236299)
chr4 (297-371)||(40298015-40298089)
chr4 (330-382)||(32653879-32653931)
chr4 (303-381)||(32543983-32544060)
chr4 (330-376)||(32651953-32651999)
chr4 (269-416)||(48524493-48524640)
chr4 (297-358)||(31089511-31089572)
chr4 (298-420)||(22812064-22812187)
chr4 (295-382)||(31647754-31647841)
chr4 (296-381)||(21762093-21762176)
chr4 (298-372)||(22611893-22611967)
chr4 (303-403)||(12094969-12095070)
chr4 (364-417)||(35808568-35808621)
chr4 (272-333)||(28668388-28668451)
chr4 (303-416)||(30694284-30694395)
chr4 (326-382)||(41142318-41142374)
chr4 (298-373)||(48400920-48400996)
[»] chr2 (17 HSPs)
chr2 (273-419)||(1870464-1870611)
chr2 (297-415)||(34501589-34501707)
chr2 (273-388)||(33635540-33635655)
chr2 (298-416)||(13835835-13835953)
chr2 (297-392)||(5444487-5444582)
chr2 (326-423)||(43131783-43131881)
chr2 (298-370)||(29525652-29525724)
chr2 (268-412)||(40346710-40346856)
chr2 (303-418)||(23453340-23453457)
chr2 (300-424)||(27896453-27896578)
chr2 (296-401)||(13618193-13618290)
chr2 (294-382)||(38193671-38193759)
chr2 (303-416)||(13738396-13738510)
chr2 (296-346)||(30905411-30905461)
chr2 (294-383)||(18717882-18717971)
chr2 (303-419)||(40574144-40574261)
chr2 (302-382)||(4623730-4623810)
[»] chr3 (19 HSPs)
chr3 (295-416)||(34228251-34228372)
chr3 (298-411)||(48252267-48252380)
chr3 (295-373)||(41287876-41287954)
chr3 (295-416)||(4020096-4020218)
chr3 (325-417)||(45408692-45408784)
chr3 (364-423)||(28940566-28940624)
chr3 (297-366)||(19202180-19202249)
chr3 (273-419)||(635675-635823)
chr3 (312-414)||(2127363-2127461)
chr3 (303-416)||(29032410-29032524)
chr3 (303-382)||(44291231-44291310)
chr3 (295-365)||(25958052-25958122)
chr3 (294-371)||(1711916-1711993)
chr3 (300-373)||(4490822-4490894)
chr3 (316-417)||(8326135-8326236)
chr3 (366-419)||(19202398-19202451)
chr3 (312-373)||(23877728-23877789)
chr3 (309-382)||(35322042-35322113)
chr3 (303-418)||(15671118-15671233)
[»] scaffold0123 (1 HSPs)
scaffold0123 (303-420)||(17528-17646)
[»] scaffold0017 (1 HSPs)
scaffold0017 (335-416)||(31466-31547)
[»] scaffold0204 (1 HSPs)
scaffold0204 (274-357)||(15337-15421)
[»] scaffold0039 (1 HSPs)
scaffold0039 (295-373)||(29980-30058)
[»] scaffold0011 (1 HSPs)
scaffold0011 (298-371)||(12923-12996)
[»] scaffold0002 (1 HSPs)
scaffold0002 (297-365)||(120719-120787)


Alignment Details
Target: chr6 (Bit Score: 318; Significance: 1e-179; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 12 - 393
Target Start/End: Complemental strand, 2398413 - 2398030
Alignment:
Q  12 gtagataatactactcaagataatttggttgtagtgcataagtgcaaatggcgtgtaagtaataaaaagcaaagtagtggtattggataattgcaagaat 111  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2398413 gtagataatactactcaagataatttggttgtagtgcataagtgcaaatggcgtgtaagtaataaaaagcaaagtagtggtattggataattgcaagaat 2398314  T
Q  112 atgtgatttgatatgatgtatacaattcatgatcatatatataaaagaaaaagtgatgatgtatttatgaatgtgagttaatattggcttaattaggaaa 211  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2398313 atgtgatttgatatgatgtatacaattcatgatcatatatataaaagaaaaagtgatgatgtatttatgaatgtgagttaatattggcttaattaggaaa 2398214  T
Q  212 ataaatacc--gnnnnnnnnnctccaatttgaagaaagagccaatgcaaagggagaaaaaagagtcttgctaaccggtgttctcagacaatgattaagga 309  Q
    ||||||| |            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||    
T  2398213 ataaatagctttgtttttttcctccaatttgaagaaagagccaatgcaaagggagaaaaaagagtcttgctaaccggtgttctcaggaaatgattaagga 2398114  T
Q  310 atctataaataggaaatttgtcttaaaaatataagttttgacttttgattaagtaataattacatcactttttctaaaaagtta 393  Q
    |||||||||||| |||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2398113 atctataaatagaaaatttatcttgaaaatataagttttgacttttgattaagtaataattacatcactttttctaaaaagtta 2398030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 303 - 419
Target Start/End: Complemental strand, 6770946 - 6770828
Alignment:
Q  303 ttaaggaatctataaataggaaatttgtcttaaaaatataagttttgacttttgattaagtaataattacatcac--tttttctaaaaagttaattgttt 400  Q
    |||||||| |||||||||| |||||| |||| ||||||||| ||||||||||||||||| |||||||||||| ||  ||||| |||||||| | ||||||    
T  6770946 ttaaggaaactataaatagaaaatttatcttgaaaatataaattttgacttttgattaaataataattacataactttttttataaaaagtgacttgttt 6770847  T
Q  401 tggttacttaaccaatgcc 419  Q
    ||||| |||||||||||||    
T  6770846 tggttgcttaaccaatgcc 6770828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 295 - 382
Target Start/End: Complemental strand, 32800325 - 32800238
Alignment:
Q  295 gacaatgattaaggaatctataaataggaaatttgtcttaaaaatataagttttgacttttgattaagtaataattacatcacttttt 382  Q
    ||||||| |||||||| |||||||||| |||||||||||||||||||||||||||| |||||||||| ||||||||||| || |||||    
T  32800325 gacaatggttaaggaaactataaatagaaaatttgtcttaaaaatataagttttgatttttgattaaataataattacaccatttttt 32800238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 296 - 402
Target Start/End: Original strand, 20208007 - 20208113
Alignment:
Q  296 acaatgattaaggaatctataaataggaaatttgtcttaaaaatataagttttgacttttgattaagtaataattacatcactttttctaaaaagttaat 395  Q
    |||||| |||| |||||||||||||  |||||||| || ||||||||||| |||||||||||||||||||||||||||| ||||||  ||||||| || |    
T  20208007 acaatggttaacgaatctataaatataaaatttgttttgaaaatataagtattgacttttgattaagtaataattacattacttttaataaaaagctact 20208106  T
Q  396 tgttttg 402  Q
    |||||||    
T  20208107 tgttttg 20208113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 296 - 402
Target Start/End: Original strand, 22102030 - 22102136
Alignment:
Q  296 acaatgattaaggaatctataaataggaaatttgtcttaaaaatataagttttgacttttgattaagtaataattacatcactttttctaaaaagttaat 395  Q
    |||||| |||| |||||||||||||  |||||||| || ||||||||||| |||||||||||||||||||||||||||| ||||||  ||||||| || |    
T  22102030 acaatggttaacgaatctataaatataaaatttgttttgaaaatataagtattgacttttgattaagtaataattacattacttttaataaaaagctact 22102129  T
Q  396 tgttttg 402  Q
    |||||||    
T  22102130 tgttttg 22102136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 303 - 389
Target Start/End: Original strand, 28048742 - 28048828
Alignment:
Q  303 ttaaggaatctataaataggaaatttgtcttaaaaatataagttttgacttttgattaagtaataattacatcactttttctaaaaa 389  Q
    ||||||||  ||||||||| |||||||| |||||||||||||||||||||||| ||||||||||||||||| |||||||| ||||||    
T  28048742 ttaaggaaattataaatagaaaatttgttttaaaaatataagttttgacttttaattaagtaataattacaccactttttataaaaa 28048828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 300 - 417
Target Start/End: Complemental strand, 10008307 - 10008190
Alignment:
Q  300 tgattaaggaatctataaataggaaatttgtcttaaaaatataagttttgacttttgattaagtaataattacatcacttttt-ctaaaaagttaattgt 398  Q
    ||||||||||||||| ||| || || ||||||||||||||||||    | ||||||||| |||||||||||||| ||||||||  |||||| ||| || |    
T  10008307 tgattaaggaatctaaaaa-agaaattttgtcttaaaaatataaacggttacttttgatcaagtaataattacaccactttttaataaaaacttacttct 10008209  T
Q  399 tttggttacttaaccaatg 417  Q
    ||||||| |||||||||||    
T  10008208 tttggttgcttaaccaatg 10008190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 309 - 382
Target Start/End: Original strand, 2613359 - 2613432
Alignment:
Q  309 aatctataaataggaaatttgtcttaaaaatataagttttgacttttgattaagtaataattacatcacttttt 382  Q
    |||| |||||||| || |||||||||||||||||||||   ||||||||| ||||||||||| |||||| ||||    
T  2613359 aatccataaatagaaattttgtcttaaaaatataagttgctacttttgatcaagtaataatttcatcacatttt 2613432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 344 - 413
Target Start/End: Complemental strand, 22552298 - 22552229
Alignment:
Q  344 gttttgacttttgattaagtaataattacatcactttttctaaaaagttaattgttttggttacttaacc 413  Q
    ||||| |||||| |||||||||||||||||| ||||||| |||||| ||| ||||||| || ||||||||    
T  22552298 gttttaacttttaattaagtaataattacataactttttataaaaatttacttgttttagtgacttaacc 22552229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 298 - 417
Target Start/End: Original strand, 9213040 - 9213160
Alignment:
Q  298 aatgattaaggaatctataaataggaaatttgtcttaaaaatataagttttgacttttgattaagtaataattacatcactttttctaaaaagtta---a 394  Q
    |||| ||||| || |||||||||  ||||||||||| ||||| || |||| || ||||||| ||||||||||||||  ||||||| ||||||||||        
T  9213040 aatggttaagaaaactataaataaaaaatttgtcttgaaaat-tatgttt-gatttttgatcaagtaataattacactactttttataaaaagttactgc 9213137  T
Q  395 ttgttttggttacttaaccaatg 417  Q
    ||||||||||| |||||||||||    
T  9213138 ttgttttggtttcttaaccaatg 9213160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 361 - 425
Target Start/End: Original strand, 16969637 - 16969701
Alignment:
Q  361 agtaataattacatcactttttctaaaaagttaattgttttggttacttaaccaatgcctcaaag 425  Q
    ||||||||||||||||||||||   |||||||| ||||||||||| |||||  ||||||||||||    
T  16969637 agtaataattacatcacttttttataaaagttatttgttttggttgcttaaataatgcctcaaag 16969701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 303 - 416
Target Start/End: Original strand, 5611130 - 5611244
Alignment:
Q  303 ttaaggaatctataaataggaaatttgtcttaaaaatataagttttgacttttgattaagtaataattacatcactttttc-taaaaagttaattgtttt 401  Q
    ||||||||||||||||||| || ||||||||| ||||||||| | | |||||| || || ||||||||| |  |||| ||| |||||| ||| |||||||    
T  5611130 ttaaggaatctataaatagaaattttgtcttagaaatataagatgttacttttaatcaaataataattatacaacttattcataaaaacttacttgtttt 5611229  T
Q  402 ggttacttaaccaat 416  Q
    || |  |||||||||    
T  5611230 ggatgtttaaccaat 5611244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 296 - 382
Target Start/End: Complemental strand, 31490471 - 31490385
Alignment:
Q  296 acaatgattaaggaatctataaataggaaatttg-tcttaaaaatataagttttgacttttgattaagtaataattacatcacttttt 382  Q
    ||||||||||||||||| || ||||| || |||| |||| |||||||||||||| |||||||  ||| ||||||||||| || |||||    
T  31490471 acaatgattaaggaatccattaatag-aattttgatcttgaaaatataagtttttacttttgtctaattaataattacaccatttttt 31490385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 303 - 371
Target Start/End: Original strand, 17834977 - 17835045
Alignment:
Q  303 ttaaggaatctataaataggaaatttgtcttaaaaatataagttttgacttttgattaagtaataatta 371  Q
    ||||||| |||| |||||| ||  |||||||  ||||||||| | | ||||||||||||||||||||||    
T  17834977 ttaaggattctacaaatagcaatattgtctttgaaatataagatattacttttgattaagtaataatta 17835045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 84; Significance: 9e-40; HSPs: 22)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 297 - 420
Target Start/End: Complemental strand, 6102946 - 6102823
Alignment:
Q  297 caatgattaaggaatctataaataggaaatttgtcttaaaaatataagttttgacttttgattaagtaataattacatcactttttctaaaaagttaatt 396  Q
    ||||| ||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||  ||||||  |||||||||| ||    
T  6102946 caatggttaaggaatctataaatagaaaatttgtcttcaaaatataagttttgacttttgattaagtaataattacaatacttttaataaaaagttactt 6102847  T
Q  397 gttttggttacttaaccaatgcct 420  Q
     |||||||| ||||||||||||||    
T  6102846 attttggttgcttaaccaatgcct 6102823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 312 - 416
Target Start/End: Complemental strand, 16802130 - 16802026
Alignment:
Q  312 ctataaataggaaatttgtcttaaaaatataagttttgacttttgattaagtaataattacatcactttttctaaaaagttaattgttttggttacttaa 411  Q
    |||||||||| ||||||||||| ||||||||| |||||||||||||||||||||||||||||| ||||||| |||||||||| ||||||||||| |||||    
T  16802130 ctataaatagaaaatttgtcttgaaaatataaattttgacttttgattaagtaataattacattactttttataaaaagttatttgttttggttgcttaa 16802031  T
Q  412 ccaat 416  Q
    |||||    
T  16802030 ccaat 16802026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 303 - 410
Target Start/End: Original strand, 12036309 - 12036416
Alignment:
Q  303 ttaaggaatctataaataggaaatttgtcttaaaaatataagttttgacttttgattaagtaataattacatcactttttctaaaaagttaattgttttg 402  Q
    |||||||| |||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||  |||||||||| || |||||    
T  12036309 ttaaggaacctataaatagaaaatttgtcttgaaaatataagttttgacttttgattaagtaataattacattacttttaataaaaagttatttattttg 12036408  T
Q  403 gttactta 410  Q
    ||||||||    
T  12036409 gttactta 12036416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 276 - 416
Target Start/End: Original strand, 14152445 - 14152587
Alignment:
Q  276 ttgctaaccggtgttctca-gacaatgattaaggaatctataaataggaaatttgtcttaaaaatataagttttgacttttgattaagtaataattacat 374  Q
    ||||||||||||| ||||| ||||||| ||||| ||  ||||||||| |||||| |||||||| || |||||| || |||| || ||||||||||||||     
T  14152445 ttgctaaccggtgatctcatgacaatggttaagaaaattataaatagaaaatttatcttaaaattaaaagtttagattttttatgaagtaataattacac 14152544  T
Q  375 cactttttct-aaaaagttaattgttttggttacttaaccaat 416  Q
    |||||||| | ||||||||| ||||||||||||||||||||||    
T  14152545 cactttttataaaaaagttacttgttttggttacttaaccaat 14152587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 307 - 406
Target Start/End: Original strand, 20527011 - 20527111
Alignment:
Q  307 ggaatctataaataggaaatttgtcttaaaaatataagttttgacttttgattaa-gtaataattacatcactttttctaaaaagttaattgttttggtt 405  Q
    |||||||||||||||  |||||||| | |||||| ||||||||| |||| ||||| |||||||||||||||||||||||||||||||| |||||||||||    
T  20527011 ggaatctataaatagataatttgtcatgaaaatagaagttttgatttttaattaaagtaataattacatcactttttctaaaaagttacttgttttggtt 20527110  T
Q  406 a 406  Q
    |    
T  20527111 a 20527111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 294 - 373
Target Start/End: Complemental strand, 35290758 - 35290679
Alignment:
Q  294 agacaatgattaaggaatctataaataggaaatttgtcttaaaaatataagttttgacttttgattaagtaataattaca 373  Q
    |||||||||||||| ||||||||| ||| |||||||||||||||||||| |||||||||||||||||||||||| |||||    
T  35290758 agacaatgattaagtaatctataattagaaaatttgtcttaaaaatatatgttttgacttttgattaagtaatatttaca 35290679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 280 - 417
Target Start/End: Complemental strand, 3600246 - 3600108
Alignment:
Q  280 taaccggtgttctcaga-caatgattaaggaatctataaataggaaatttgtcttaaaaatataagttttgacttttgattaagtaataattacatcact 378  Q
    ||||||||| ||||||  ||||| ||||| || |||||||||  | ||||||||| |||||||||||||||| |||| |||||||||||||||||| |||    
T  3600246 taaccggtgctctcagggcaatggttaagaaaactataaataaaatatttgtcttgaaaatataagttttgaattttaattaagtaataattacattact 3600147  T
Q  379 ttttctaaaaagttaattgttttggttacttaaccaatg 417  Q
    |||| |||||||||  || |||||||| ||||| |||||    
T  3600146 ttttataaaaagttttttattttggttgcttaatcaatg 3600108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 298 - 420
Target Start/End: Complemental strand, 6830385 - 6830262
Alignment:
Q  298 aatgattaaggaatctataaataggaaatttgtcttaaaaatataagttttgacttttgattaagtaataattacatcactttttct-aaaaagttaatt 396  Q
    |||| ||||||||| ||||||||| |||| |||||| |||||||||||| |||  ||||||| | |||||||||||  ||||||  | ||||| ||| ||    
T  6830385 aatggttaaggaatttataaatagaaaatgtgtcttgaaaatataagttctgaaatttgattcaataataattacactacttttaataaaaaaattactt 6830286  T
Q  397 gttttggttacttaaccaatgcct 420  Q
    ||||||||| ||||||||||||||    
T  6830285 gttttggttgcttaaccaatgcct 6830262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 302 - 370
Target Start/End: Complemental strand, 2033567 - 2033499
Alignment:
Q  302 attaaggaatctataaataggaaatttgtcttaaaaatataagttttgacttttgattaagtaataatt 370  Q
    ||||||||| |||||||||  ||||||   |||||||||||||||||||||||||||||||||||||||    
T  2033567 attaaggaaactataaataaaaaatttaggttaaaaatataagttttgacttttgattaagtaataatt 2033499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 298 - 416
Target Start/End: Original strand, 15139166 - 15139281
Alignment:
Q  298 aatgattaaggaatctataaataggaaatttgtcttaaaaatataagttttgacttttgattaagtaataattacatcactttttctaaaaagttaattg 397  Q
    |||| |||||||| |||||||||  ||||||||||| |||||||||| ||||| |||||||||||   ||||||||  ||||||| |||||| ||| ||     
T  15139166 aatggttaaggaaactataaataaaaaatttgtcttgaaaatataagatttgatttttgattaag---taattacactactttttataaaaaattactta 15139262  T
Q  398 ttttggttacttaaccaat 416  Q
    ||||| || ||||||||||    
T  15139263 ttttgattgcttaaccaat 15139281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 303 - 420
Target Start/End: Original strand, 30840599 - 30840716
Alignment:
Q  303 ttaaggaatctataaataggaaatttgtcttaaaaatataagttttgacttttgattaagtaataattacatcactttttctaaaaagttaattgttttg 402  Q
    ||||||||||||  || || ||||||||||| |||||||||| | | ||||||||| ||||||| ||||||  ||||||| | |||| ||| ||||||||    
T  30840599 ttaaggaatctactaacagaaaatttgtcttgaaaatataagatgttacttttgatcaagtaatgattacacaactttttttgaaaacttacttgttttg 30840698  T
Q  403 gttacttaaccaatgcct 420  Q
    | | ||||| ||||||||    
T  30840699 gatgcttaatcaatgcct 30840716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 312 - 373
Target Start/End: Original strand, 39034461 - 39034522
Alignment:
Q  312 ctataaataggaaatttgtcttaaaaatataagttttgacttttgattaagtaataattaca 373  Q
    |||| ||||| ||||  ||||| |||||||||||||||||||||||||||||||||||||||    
T  39034461 ctattaatagaaaataggtcttgaaaatataagttttgacttttgattaagtaataattaca 39034522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 323 - 392
Target Start/End: Complemental strand, 5471170 - 5471101
Alignment:
Q  323 aaatttgtcttaaaaatataagttttgacttttgattaagtaataattacatcactttttctaaaaagtt 392  Q
    |||||||||||  ||||||| |||||||||||||||||| ||||||| |||| | ||||| |||||||||    
T  5471170 aaatttgtcttggaaatatatgttttgacttttgattaaataataataacattattttttataaaaagtt 5471101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 303 - 382
Target Start/End: Original strand, 2611149 - 2611229
Alignment:
Q  303 ttaaggaatctataaataggaaatt-tgtcttaaaaatataagttttgacttttgattaagtaataattacatcacttttt 382  Q
    ||||||||||||||||||| || || ||||||  ||||||||| | | |||||| |||||||||||||||||| |||||||    
T  2611149 ttaaggaatctataaatagaaatttatgtcttggaaatataagctgtcactttttattaagtaataattacattacttttt 2611229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 303 - 383
Target Start/End: Original strand, 30293824 - 30293904
Alignment:
Q  303 ttaaggaatctataaataggaaatttgtcttaaaaatataagttttgacttttgattaagtaataattacatcactttttc 383  Q
    |||| ||||||| |||||| || ||||||||||||||||||| | | ||||||||| ||||||| ||||||| | ||||||    
T  30293824 ttaaagaatctacaaatagaaattttgtcttaaaaatataagatgttacttttgatcaagtaatgattacataattttttc 30293904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 297 - 367
Target Start/End: Complemental strand, 29552443 - 29552373
Alignment:
Q  297 caatgattaaggaatctataaataggaaatttgtcttaaaaatataagttttgacttttgattaagtaata 367  Q
    ||||| |||||||| |||||||||| |||||||| |   |||||||| ||||||| |||||||||||||||    
T  29552443 caatggttaaggaaactataaatagaaaatttgtttcgtaaatataaattttgacatttgattaagtaata 29552373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 295 - 349
Target Start/End: Original strand, 35349387 - 35349441
Alignment:
Q  295 gacaatgattaaggaatctataaataggaaatttgtcttaaaaatataagttttg 349  Q
    |||||||||||| |||||||||||||| |||||| | || |||||||||||||||    
T  35349387 gacaatgattaaagaatctataaatagaaaatttattttgaaaatataagttttg 35349441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 325 - 382
Target Start/End: Complemental strand, 5002977 - 5002920
Alignment:
Q  325 atttgtcttaaaaatataagttttgacttttgattaagtaataattacatcacttttt 382  Q
    ||||||||| |||||| ||||||| ||||||||||||||||||| ||||  |||||||    
T  5002977 atttgtcttgaaaataaaagttttaacttttgattaagtaataactacacaacttttt 5002920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 268 - 371
Target Start/End: Complemental strand, 9115032 - 9114930
Alignment:
Q  268 aaagagtcttgctaaccggtgttctcag-acaatgattaaggaatctataaataggaaatttgtcttaaaaatataagttttgacttttgattaagtaat 366  Q
    |||| ||||||||||||| ||  ||||| |||||||||||| ||  |||||  || |||||| |||| ||||||||| |||| | |||| ||||||||||    
T  9115032 aaagtgtcttgctaaccgatg--ctcaggacaatgattaagaaaattataagaagaaaatttatcttgaaaatataaattttaattttttattaagtaat 9114935  T
Q  367 aatta 371  Q
    |||||    
T  9114934 aatta 9114930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 295 - 356
Target Start/End: Complemental strand, 35626708 - 35626647
Alignment:
Q  295 gacaatgattaaggaatctataaataggaaatttgtcttaaaaatataagttttgacttttg 356  Q
    ||||||| |||||||||| || ||||| || ||||| || |||||||||||||| |||||||    
T  35626708 gacaatggttaaggaatccattaatagaaattttgttttgaaaatataagtttttacttttg 35626647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 335 - 416
Target Start/End: Original strand, 28511182 - 28511265
Alignment:
Q  335 aaaatataagttttgacttttgattaagtaataattacatcac--tttttctaaaaagttaattgttttggttacttaaccaat 416  Q
    ||||| |||||||| ||||||||| || |||||||||||  ||  ||||| |||||| |||  |||||||||| ||||||||||    
T  28511182 aaaatgtaagtttttacttttgatgaattaataattacactactttttttataaaaacttacatgttttggttgcttaaccaat 28511265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 273 - 344
Target Start/End: Complemental strand, 34347025 - 34346953
Alignment:
Q  273 gtcttgctaaccggtgttctcaga-caatgattaaggaatctataaataggaaatttgtcttaaaaatataag 344  Q
    ||||| |||||| |||| |||| | ||||| |||||||||||| |||||  ||||||||||| ||||||||||    
T  34347025 gtcttactaaccagtgtcctcatagcaatggttaaggaatctacaaataaaaaatttgtcttgaaaatataag 34346953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0299 (Bit Score: 80; Significance: 2e-37; HSPs: 1)
Name: scaffold0299
Description:

Target: scaffold0299; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 291 - 419
Target Start/End: Original strand, 18005 - 18135
Alignment:
Q  291 ctcagacaatgattaaggaatctataaataggaaatttgtcttaaaaatataagttttgacttttgattaagtaataattacatcac--tttttctaaaa 388  Q
    |||||||| || |||||||| |||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||  ||  ||||| |||||    
T  18005 ctcagacattggttaaggaaactataaatagaaaatttatcttaaaaatataagttttgacttttgattaagtaataattacacaactttttttataaaa 18104  T
Q  389 agttaattgttttggttacttaaccaatgcc 419  Q
    ||||| ||||||||||| |||||||||||||    
T  18105 agttacttgttttggttgcttaaccaatgcc 18135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 76; Significance: 6e-35; HSPs: 25)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 273 - 419
Target Start/End: Complemental strand, 24937974 - 24937827
Alignment:
Q  273 gtcttgctaaccggtgttctcaga-caatgattaaggaatctataaataggaaatttgtcttaaaaatataagttttgacttttgattaagtaataatta 371  Q
    |||||||||||| |||  |||||  ||||| |||||||| |||||||||| |||||||| |||||||||||  ||||||||||| |||||||||||||||    
T  24937974 gtcttgctaaccagtgccctcagggcaatggttaaggaaactataaatagaaaatttgttttaaaaatatagattttgacttttaattaagtaataatta 24937875  T
Q  372 catcactttttctaaaaagttaattgttttggttacttaaccaatgcc 419  Q
    || |||||||| |||||||||| || |||||||| |||||||||||||    
T  24937874 caccactttttataaaaagttacttattttggttccttaaccaatgcc 24937827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 273 - 417
Target Start/End: Complemental strand, 8656439 - 8656291
Alignment:
Q  273 gtcttgctaaccggtgttctca--gacaatgattaaggaatctataaataggaaatttgtcttaaaaatataagttttgacttttgattaagtaataatt 370  Q
    |||||||||||| |||||||||  ||||||| |||||||| |||||||||| |||||||||||||||| ||||||||| |||||||||||||||||||||    
T  8656439 gtcttgctaaccagtgttctcaaagacaatggttaaggaaactataaatagaaaatttgtcttaaaaaaataagttttaacttttgattaagtaataatt 8656340  T
Q  371 acatcacttttt--ctaaaaagttaattgttttggttacttaaccaatg 417  Q
    | | ||||||||    ||||||| | ||||||||||| |||||||||||    
T  8656339 ataccacttttttataaaaaagtcacttgttttggttgcttaaccaatg 8656291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 295 - 420
Target Start/End: Original strand, 39786445 - 39786571
Alignment:
Q  295 gacaatgattaaggaatctataaataggaaatttgtcttaaaaatataagttttgacttttgattaagtaataattacatcactttttct-aaaaagtta 393  Q
    ||||||| ||||||||||||||||||| ||| ||||||| |||||||||||||| |||||||||||| |||||||||||  ||||||  | |||||||||    
T  39786445 gacaatggttaaggaatctataaatagaaaacttgtcttgaaaatataagttttaacttttgattaaataataattacactacttttaataaaaaagtta 39786544  T
Q  394 attgttttggttacttaaccaatgcct 420  Q
     ||||||||||| ||||||||||||||    
T  39786545 tttgttttggttgcttaaccaatgcct 39786571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 304 - 417
Target Start/End: Complemental strand, 47537536 - 47537423
Alignment:
Q  304 taaggaatctataaataggaaatttgtcttaaaaatataagttttgacttttgattaagtaataattacatcactttttctaaaaagttaattgttttgg 403  Q
    ||||||| ||||||||   ||||||||||| |||||||||||||||| ||||||||||||||||||||||  ||||||| ||||||||||  |||||| |    
T  47537536 taaggaaactataaatgaaaaatttgtcttgaaaatataagttttgatttttgattaagtaataattacacaactttttataaaaagttacctgttttag 47537437  T
Q  404 ttacttaaccaatg 417  Q
    || |||||| ||||    
T  47537436 ttgcttaactaatg 47537423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 298 - 389
Target Start/End: Complemental strand, 40721504 - 40721412
Alignment:
Q  298 aatgattaaggaatctataaataggaaatttgtcttaaaaatataagttttgac-ttttgattaagtaataattacatcactttttctaaaaa 389  Q
    ||||||||| |||| ||||||||| ||||||||| |||||||||||||||| || ||||||||||||| |||||||| || ||||| ||||||    
T  40721504 aatgattaaagaatttataaatagaaaatttgtcataaaaatataagttttaactttttgattaagtagtaattacaccattttttataaaaa 40721412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 303 - 417
Target Start/End: Original strand, 21857601 - 21857715
Alignment:
Q  303 ttaaggaatctataaataggaaatttgtcttaaaaatataagttttgacttttgattaagtaataattacatcactttttctaaaaagttaattgttttg 402  Q
    |||| |||| ||||||||| |||||||||||  |||||||||||||||  |||| |||| |||||||||||  ||||||  |||||||||| || ||||     
T  21857601 ttaaagaatttataaatagaaaatttgtcttgtaaatataagttttgatatttggttaattaataattacactacttttaataaaaagttacttattttt 21857700  T
Q  403 gttacttaaccaatg 417  Q
    |||||||||| ||||    
T  21857701 gttacttaactaatg 21857715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 268 - 383
Target Start/End: Original strand, 12810112 - 12810228
Alignment:
Q  268 aaagagtcttgctaaccggtgttctcagacaa-tgattaaggaatctataaataggaaatttgtcttaaaaatataagttttgacttttgattaagtaat 366  Q
    |||| ||||||||||||| ||| |||||| || ||||||| ||||||||||||   || ||||||||||||||||||| | | ||||||||  |||||||    
T  12810112 aaagggtcttgctaaccgatgtcctcagagaaatgattaatgaatctataaatgaaaattttgtcttaaaaatataagatattacttttgacaaagtaat 12810211  T
Q  367 aattacatcactttttc 383  Q
    |||||||  ||||||||    
T  12810212 aattacacaactttttc 12810228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 312 - 370
Target Start/End: Complemental strand, 25780303 - 25780245
Alignment:
Q  312 ctataaataggaaatttgtcttaaaaatataagttttgacttttgattaagtaataatt 370  Q
    |||||||||  |||||||||| |||||||||||||||||||||| ||||||||||||||    
T  25780303 ctataaataaaaaatttgtctgaaaaatataagttttgacttttaattaagtaataatt 25780245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 297 - 359
Target Start/End: Original strand, 27915189 - 27915251
Alignment:
Q  297 caatgattaaggaatctataaataggaaatttgtcttaaaaatataagttttgacttttgatt 359  Q
    ||||||||||||||  |||| |||| |||||||| ||||||||||||||||||||||||||||    
T  27915189 caatgattaaggaaattatatatagaaaatttgtgttaaaaatataagttttgacttttgatt 27915251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 273 - 414
Target Start/End: Original strand, 37532524 - 37532668
Alignment:
Q  273 gtcttgctaaccggtgttctcagacaa-tgattaaggaatctataaataggaaatttgtcttaaaaatataagttttgacttttgattaagtaataatta 371  Q
    |||||||||||| ||| ||||||  || || |||||||| |||||| ||  |||||| | |||||||||||| ||| |||||||||||||| ||||||||    
T  37532524 gtcttgctaaccagtgctctcagggaagtggttaaggaaactataagtataaaatttatattaaaaatataaatttcgacttttgattaagaaataatta 37532623  T
Q  372 catcacttttt--ctaaaaagttaattgttttggttacttaacca 414  Q
    || || |||||    ||||||||| |||||| |||| ||||||||    
T  37532624 caccatttttttataaaaaagttacttgtttcggttgcttaacca 37532668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 297 - 373
Target Start/End: Original strand, 1112147 - 1112223
Alignment:
Q  297 caatgattaaggaatctataaataggaaatttgtcttaaaaatataagttttgacttttgattaagtaataattaca 373  Q
    |||||||| ||||| |||||||||| |||||||| || ||| ||||| ||||||||||| || ||||||||||||||    
T  1112147 caatgattgaggaaactataaatagaaaatttgttttgaaattataaattttgacttttaatgaagtaataattaca 1112223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 294 - 418
Target Start/End: Complemental strand, 30095441 - 30095316
Alignment:
Q  294 agacaatgattaaggaatctataaataggaaatttgtctt--aaaaatataagttttgacttttgattaagtaataattacatcactttttctaaaaagt 391  Q
    |||||||||||||| |||||| |||||| ||||| |||||  ||| ||||||||||| |||||||||| ||||||| ||||| ||  |||| | |||| |    
T  30095441 agacaatgattaagaaatctacaaatagaaaattagtcttgaaaatatataagttttaacttttgatttagtaatagttacaccatcttttattaaaa-t 30095343  T
Q  392 taattgttttggttacttaaccaatgc 418  Q
    || |||||||| ||  |||||||||||    
T  30095342 tacttgttttgcttgtttaaccaatgc 30095316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 335 - 414
Target Start/End: Original strand, 32279688 - 32279767
Alignment:
Q  335 aaaatataagttttgacttttgattaagtaataattacatcactttttctaaaaagttaattgttttggttacttaacca 414  Q
    ||||||||||| |||| |||| |||||||||||||||||| | ||||  ||||||||| |||||||| ||| ||||||||    
T  32279688 aaaatataagtgttgattttttattaagtaataattacattatttttaataaaaagttgattgttttagttgcttaacca 32279767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 326 - 389
Target Start/End: Complemental strand, 46300762 - 46300699
Alignment:
Q  326 tttgtcttaaaaatataagttttgacttttgattaagtaataattacatcactttttctaaaaa 389  Q
    |||||||| |||||||| |||||||||||| || | ||||||||||||||||||||| ||||||    
T  46300762 tttgtcttgaaaatatatgttttgactttttatcatgtaataattacatcactttttataaaaa 46300699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 297 - 382
Target Start/End: Complemental strand, 22555823 - 22555738
Alignment:
Q  297 caatgattaaggaatctataaataggaaatttgtcttaaaaatataagttttgacttttgattaagtaataattacatcacttttt 382  Q
    ||||| |||| ||||  |||||||| || ||| |||| |||||||||||||||| ||||||| |||||||||||||| || |||||    
T  22555823 caatggttaaagaattcataaatagaaattttatctttaaaatataagttttgatttttgatcaagtaataattacaacatttttt 22555738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 327 - 382
Target Start/End: Complemental strand, 44845894 - 44845840
Alignment:
Q  327 ttgtcttaaaaatataagttttgacttttgattaagtaataattacatcacttttt 382  Q
    ||||||||||||||||| |||||||||||||||| ||||| |||| ||||||||||    
T  44845894 ttgtcttaaaaatataaattttgacttttgattaggtaat-attatatcacttttt 44845840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 326 - 419
Target Start/End: Complemental strand, 16980031 - 16979937
Alignment:
Q  326 tttgtcttaaaaatataagttttgacttttgattaagtaataattacatcactttttc-taaaaagttaattgttttggttacttaaccaatgcc 419  Q
    |||||||| |||||||||| | | |||||||||  ||||||||| |||  |||||||| |||||| ||| ||||||||| | |||||||||||||    
T  16980031 tttgtcttgaaaatataagatgttacttttgatcgagtaataatcacacaactttttcataaaaatttacttgttttggatgcttaaccaatgcc 16979937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 303 - 373
Target Start/End: Complemental strand, 19677107 - 19677037
Alignment:
Q  303 ttaaggaatctataaataggaaatttgtcttaaaaatataagttttgacttttgattaagtaataattaca 373  Q
    |||||||||| | |||||| || |||||||| |||||||||| | | ||||||||||||||||| ||||||    
T  19677107 ttaaggaatcgacaaatagaaattttgtcttgaaaatataagatgttacttttgattaagtaatgattaca 19677037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 276 - 369
Target Start/End: Complemental strand, 39387045 - 39386951
Alignment:
Q  276 ttgctaaccggtgttctca-gacaatgattaaggaatctataaataggaaatttgtcttaaaaatataagttttgacttttgattaagtaataat 369  Q
    ||||||||||||| ||||| |  |||| |||| ||| |||||||||  |||||| || ||||||||||| |||| ||||||||| ||||||||||    
T  39387045 ttgctaaccggtgctctcaaggtaatggttaaagaaactataaataaaaaatttatcctaaaaatataaattttaacttttgatcaagtaataat 39386951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 297 - 350
Target Start/End: Original strand, 28664542 - 28664595
Alignment:
Q  297 caatgattaaggaatctataaataggaaatttgtcttaaaaatataagttttga 350  Q
    ||||| ||||||||||||||||||| |||||||| || |||||||| |||||||    
T  28664542 caatggttaaggaatctataaatagaaaatttgtattgaaaatatacgttttga 28664595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 303 - 371
Target Start/End: Original strand, 47445357 - 47445425
Alignment:
Q  303 ttaaggaatctataaataggaaatttgtcttaaaaatataagttttgacttttgattaagtaataatta 371  Q
    ||||||||||  ||||||| || ||||  || |||||||||||||| ||||||||| ||||||||||||    
T  47445357 ttaaggaatccttaaatagaaattttgctttgaaaatataagtttttacttttgatgaagtaataatta 47445425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 301 - 371
Target Start/End: Complemental strand, 5871308 - 5871239
Alignment:
Q  301 gattaaggaatctataaataggaaatttgtcttaaaaatataagttttgacttttgattaagtaataatta 371  Q
    |||||||||||||||||||| ||||||||  || |||||||||||| | || ||| || ||||||||||||    
T  5871308 gattaaggaatctataaata-gaaatttggtttcaaaatataagttgttacgtttaatcaagtaataatta 5871239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 300 - 382
Target Start/End: Original strand, 11740359 - 11740441
Alignment:
Q  300 tgattaaggaatctataaataggaaatttgtcttaaaaatataagttttgacttttgattaagtaataattacatcacttttt 382  Q
    |||||||||||||||  ||||| ||| ||||||| |||||||||  | | ||||||||| || |||| |||||| ||||||||    
T  11740359 tgattaaggaatctaataatagaaaaattgtcttgaaaatataaactgttacttttgatcaactaattattacaccacttttt 11740441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 296 - 373
Target Start/End: Original strand, 8896592 - 8896669
Alignment:
Q  296 acaatgattaaggaatctataaataggaaatttgtcttaaaaatataagttttgacttttgattaagtaataattaca 373  Q
    |||||| |||| ||||||| |||||  || ||||||||||||||||||| | | ||||||||| | ||||| ||||||    
T  8896592 acaatgtttaaagaatctacaaatataaattttgtcttaaaaatataagatgttacttttgatcaggtaatgattaca 8896669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 326 - 383
Target Start/End: Original strand, 34993152 - 34993209
Alignment:
Q  326 tttgtcttaaaaatataagttttgacttttgattaagtaataattacatcactttttc 383  Q
    ||||||||||||||||||| | | ||||||||| || |||||||||||  ||||||||    
T  34993152 tttgtcttaaaaatataagatgttacttttgataaaataataattacacaactttttc 34993209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 74; Significance: 9e-34; HSPs: 22)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 297 - 418
Target Start/End: Complemental strand, 18131309 - 18131188
Alignment:
Q  297 caatgattaaggaatctataaataggaaatttgtcttaaaaatataagttttgacttttgattaagtaataattacatcactttttctaaaaagttaatt 396  Q
    ||||||||||| |||| |||||||| ||||||||||| ||||||||||||||||||  |||||||||||||||||||  ||||||  |||||||||| ||    
T  18131309 caatgattaagaaatccataaatagaaaatttgtcttgaaaatataagttttgactactgattaagtaataattacactacttttaataaaaagttactt 18131210  T
Q  397 gttttggttacttaaccaatgc 418  Q
    ||||||||| ||||||||||||    
T  18131209 gttttggttgcttaaccaatgc 18131188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 297 - 395
Target Start/End: Complemental strand, 40607416 - 40607318
Alignment:
Q  297 caatgattaaggaatctataaataggaaatttgtcttaaaaatataagttttgacttttgattaagtaataattacatcactttttctaaaaagttaat 395  Q
    ||||| ||||| ||| ||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||  ||||||  ||||||||||||    
T  40607416 caatggttaagaaatttataaatagaaaatttatcttaaaaatataagttttgacttttgattaagtaataattacactacttttaataaaaagttaat 40607318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 303 - 419
Target Start/End: Complemental strand, 10452011 - 10451893
Alignment:
Q  303 ttaaggaatctataaataggaaatttgtcttaaaaatataagttttgacttttgattaagtaataa-ttacatcactttttct-aaaaagttaattgttt 400  Q
    |||||||| |||||||||  || ||||| ||||||||||||||||||||||||||||||||||||| ||||| || ||||| | ||||| ||| ||||||    
T  10452011 ttaaggaaactataaataaaaattttgtattaaaaatataagttttgacttttgattaagtaataatttacaccattttttataaaaaaattacttgttt 10451912  T
Q  401 tggttacttaaccaatgcc 419  Q
    | ||| |||||||||||||    
T  10451911 tagttgcttaaccaatgcc 10451893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 295 - 367
Target Start/End: Complemental strand, 12958995 - 12958923
Alignment:
Q  295 gacaatgattaaggaatctataaataggaaatttgtcttaaaaatataagttttgacttttgattaagtaata 367  Q
    |||||||||||| |||||||||||||| ||||||||||| |||||||||||||| | ||||||||||||||||    
T  12958995 gacaatgattaaagaatctataaatagaaaatttgtcttcaaaatataagtttttatttttgattaagtaata 12958923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 297 - 393
Target Start/End: Complemental strand, 4989813 - 4989717
Alignment:
Q  297 caatgattaaggaatctataaataggaaatttgtcttaaaaatataagttttgacttttgattaagtaataattacatcactttttctaaaaagtta 393  Q
    ||||| ||||| || |||||||||  ||||||||||| |||||||||||||||| ||||||| |||||| |||||||| | ||||| ||||||||||    
T  4989813 caatggttaagaaaactataaataaaaaatttgtcttgaaaatataagttttgatttttgatcaagtaacaattacataattttttataaaaagtta 4989717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 298 - 373
Target Start/End: Complemental strand, 27283407 - 27283333
Alignment:
Q  298 aatgattaaggaatctataaataggaaatttgtcttaaaaatataagttttgacttttgattaagtaataattaca 373  Q
    |||| |||||||| |||||||||| |||||| | ||| || ||||||||||||||||||||||| |||||||||||    
T  27283407 aatggttaaggaaactataaatagaaaatttattttataa-tataagttttgacttttgattaaataataattaca 27283333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 297 - 402
Target Start/End: Complemental strand, 13873815 - 13873709
Alignment:
Q  297 caatgattaaggaatctataaataggaaatttgtcttaaaaatataagttttgacttttgattaagtaataattacatcactttttc-taaaaagttaat 395  Q
    ||||||||||||||||||||||||  |  ||||||||| ||||||||| | | | |||| |||||||||| ||| ||| | |||||| |||||| |||||    
T  13873815 caatgattaaggaatctataaataaaatttttgtcttagaaatataagatgttatttttaattaagtaatgattgcataattttttcataaaaacttaat 13873716  T
Q  396 tgttttg 402  Q
    |||||||    
T  13873715 tgttttg 13873709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 300 - 382
Target Start/End: Complemental strand, 20822005 - 20821923
Alignment:
Q  300 tgattaaggaatctataaataggaaatttgtcttaaaaatataagttttgacttttgattaagtaataattacatcacttttt 382  Q
    |||||||| |||||||| |||| |   ||||||||||||||||| || | |||||| |||||||||||||||||| |||||||    
T  20822005 tgattaagaaatctatagatagaattgttgtcttaaaaatataaattgtcactttttattaagtaataattacattacttttt 20821923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 298 - 402
Target Start/End: Original strand, 15869007 - 15869111
Alignment:
Q  298 aatgattaaggaatctataaataggaaatttgtcttaaaaatataagttttgacttttgattaagtaataattacatcactttttctaaaaagttaattg 397  Q
    |||| ||||| || |||||||||  ||||||  || |||||||||| |||||| |||| ||||| |||||||||||| ||||| | |||||||||| ||     
T  15869007 aatggttaagaaaactataaataaaaaatttaactaaaaaatataaattttgatttttaattaaataataattacattactttatataaaaagttattta 15869106  T
Q  398 ttttg 402  Q
    |||||    
T  15869107 ttttg 15869111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 295 - 371
Target Start/End: Original strand, 34085199 - 34085275
Alignment:
Q  295 gacaatgattaaggaatctataaataggaaatttgtcttaaaaatataagttttgacttttgattaagtaataatta 371  Q
    ||||||| ||||| |||  |||||||  |||||||| || ||||||||||||||||||||| |||||| ||||||||    
T  34085199 gacaatggttaagaaattcataaataaaaaatttgttttgaaaatataagttttgacttttaattaagcaataatta 34085275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 273 - 419
Target Start/End: Complemental strand, 11151065 - 11150918
Alignment:
Q  273 gtcttgctaaccggtgttctcaga-caatgattaaggaatctataaataggaaatttgtcttaaaaatataagttttgacttttgattaagtaataatta 371  Q
    ||||| ||||||||||  |||||  |||||||||||||||||| |||||  |  ||||||||| ||||||||| | | ||||||||| || |||| ||||    
T  11151065 gtcttcctaaccggtgccctcagggcaatgattaaggaatctacaaataaaatttttgtcttagaaatataagatgttacttttgatcaaataatgatta 11150966  T
Q  372 catcactttttctaaaaagttaattgttttggttacttaaccaatgcc 419  Q
    ||  | ||||| |||||| ||| || |||||  | |||||||||||||    
T  11150965 cacaattttttttaaaaacttacttattttgaatgcttaaccaatgcc 11150918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 303 - 419
Target Start/End: Complemental strand, 20542499 - 20542382
Alignment:
Q  303 ttaaggaatctataaataggaaatttgtcttaaaaatataagttttgacttttgattaagtaataattacatcacttttt--ctaaaaagttaattgttt 400  Q
    |||||||||||| |||||| || || |||||  ||||||||| | | ||||||||||||||||| |||||| ||||||||   |||||| ||| | ||||    
T  20542499 ttaaggaatctacaaatagaaatttcgtcttggaaatataagatgttacttttgattaagtaatgattaca-cacttttttcttaaaaacttactcgttt 20542401  T
Q  401 tggttacttaaccaatgcc 419  Q
    ||| | |||||||||||||    
T  20542400 tggatgcttaaccaatgcc 20542382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 302 - 373
Target Start/End: Complemental strand, 33621479 - 33621408
Alignment:
Q  302 attaaggaatctataaataggaaatttgtcttaaaaatataagttttgacttttgattaagtaataattaca 373  Q
    ||||||||||||| |||||  || ||||||||||||||||||  ||| ||||||||| ||||||| ||||||    
T  33621479 attaaggaatctacaaataaaaattttgtcttaaaaatataaaattttacttttgatcaagtaattattaca 33621408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 313 - 420
Target Start/End: Original strand, 34678218 - 34678325
Alignment:
Q  313 tataaataggaaatttgtcttaaaaatataagttttgacttttgattaagtaataattacatcactttttctaaaaagttaattgttttggttacttaac 412  Q
    ||||||||| ||||||||||| ||||| |||  | | ||||||||| ||||||||||||||| | ||||| | |||||||  ||||||||  | ||||||    
T  34678218 tataaatagaaaatttgtcttgaaaatgtaaaatgttacttttgatcaagtaataattacataattttttattaaaagttgcttgttttgaatgcttaac 34678317  T
Q  413 caatgcct 420  Q
    || |||||    
T  34678318 cattgcct 34678325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 297 - 403
Target Start/End: Original strand, 44648933 - 44649040
Alignment:
Q  297 caatgattaaggaatctataaataggaaatttgtcttaaaaatataagttttgacttttgattaagtaataattacatcactttttc-taaaaagttaat 395  Q
    ||||| |||||||||||| |||||| || |||||||| |||||||||  | | ||||||||| ||||||| ||||||  |||||||| | |||| ||| |    
T  44648933 caatggttaaggaatctacaaatagaaattttgtcttgaaaatataaaatgttacttttgataaagtaatgattacacaactttttcatgaaaacttatt 44649032  T
Q  396 tgttttgg 403  Q
    ||||||||    
T  44649033 tgttttgg 44649040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 276 - 373
Target Start/End: Original strand, 18200654 - 18200752
Alignment:
Q  276 ttgctaaccggtgttctca-gacaatgattaaggaatctataaataggaaatttgtcttaaaaatataagttttgacttttgattaagtaataattaca 373  Q
    ||||||| |||||| |||| || |||| ||||| |||||| |||||  || ||||||||||||||||||  | | ||||||||||||||||| ||||||    
T  18200654 ttgctaatcggtgtcctcaagataatggttaagaaatctacaaataaaaattttgtcttaaaaatataacatgttacttttgattaagtaatgattaca 18200752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 273 - 344
Target Start/End: Original strand, 10652500 - 10652572
Alignment:
Q  273 gtcttgctaaccggtgttctcaga-caatgattaaggaatctataaataggaaatttgtcttaaaaatataag 344  Q
    |||||||||||| ||| ||||||  |||| ||||| |||||||||||||| || ||||||||| |||||||||    
T  10652500 gtcttgctaaccagtgctctcagggcaataattaaagaatctataaatagaaattttgtcttataaatataag 10652572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 344 - 420
Target Start/End: Original strand, 30924208 - 30924284
Alignment:
Q  344 gttttgacttttgattaagtaataattacatcactttttctaaaaagttaattgttttggttacttaaccaatgcct 420  Q
    ||||| ||||||||||||||||||||||||  | ||||| |||||| ||| || ||||||||  || ||||||||||    
T  30924208 gtttttacttttgattaagtaataattacactattttttataaaaatttacttattttggttgtttgaccaatgcct 30924284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 263 - 373
Target Start/End: Original strand, 3347471 - 3347582
Alignment:
Q  263 agaaaaaagagtcttgctaaccggtgttctca-gacaatgattaaggaatctataaataggaaatttgtcttaaaaatataagttttgacttttgattaa 361  Q
    |||||||| ||||||||||||  ||   |||| ||||||| ||||| |||||| |||||  || |||||||| |||||||||| | | |||||| || ||    
T  3347471 agaaaaaaaagtcttgctaacaagtaccctcatgacaatggttaagaaatctacaaataaaaattttgtcttgaaaatataagatgttacttttaataaa 3347570  T
Q  362 gtaataattaca 373  Q
    ||||||||||||    
T  3347571 gtaataattaca 3347582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 295 - 382
Target Start/End: Original strand, 12987634 - 12987721
Alignment:
Q  295 gacaatgattaaggaatctataaataggaaatttgtcttaaaaatataagttttgacttttgattaagtaataattacatcacttttt 382  Q
    ||||||| |||| |||||  ||||| | || |||||||| |||| ||||||||| |||||||||||| |||| |||||| | ||||||    
T  12987634 gacaatggttaatgaatcactaaatggaaattttgtcttgaaaacataagtttttacttttgattaaataatgattacaccgcttttt 12987721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 298 - 416
Target Start/End: Original strand, 35901412 - 35901531
Alignment:
Q  298 aatgattaaggaatctataaataggaaatttgtcttaaaaatataagttttgacttttgattaagtaataattacatcactttttc-taaaaagttaatt 396  Q
    |||| |||||||||||| |||||| || ||||| || ||||| |||| | | |||||| ||||| |||| ||| ||  |||||||| |||||| ||| ||    
T  35901412 aatggttaaggaatctacaaatagaaattttgttttgaaaatgtaagatgttacttttaattaaataatgattgcacaactttttcataaaaacttactt 35901511  T
Q  397 gttttggttacttaaccaat 416  Q
    ||||||| | ||||||||||    
T  35901512 gttttggatgcttaaccaat 35901531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 273 - 344
Target Start/End: Original strand, 10654867 - 10654939
Alignment:
Q  273 gtcttgctaaccggtgttctca-gacaatgattaaggaatctataaataggaaatttgtcttaaaaatataag 344  Q
    |||||||||||| ||| ||||| |||||||||||| |||| |||||| || ||  |||||||| |||||||||    
T  10654867 gtcttgctaaccagtgctctcaagacaatgattaaagaatttataaagagaaatattgtcttataaatataag 10654939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 73; Significance: 3e-33; HSPs: 31)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 273 - 400
Target Start/End: Complemental strand, 27641 - 27513
Alignment:
Q  273 gtcttgctaaccggtgttctca-gacaatgattaaggaatctataaataggaaatttgtcttaaaaatataagttttgacttttgattaagtaataatta 371  Q
    |||||||||||| |||  |||| |||||||||||||| | |||||||||  ||||||||||| |||||||||||||||||||||||||||||||||||||    
T  27641 gtcttgctaaccagtgccctcacgacaatgattaagggaactataaataaaaaatttgtctttaaaatataagttttgacttttgattaagtaataatta 27542  T
Q  372 catcactttttctaaaaagttaattgttt 400  Q
    ||  ||||||| |||||||||| ||||||    
T  27541 cactactttttataaaaagttacttgttt 27513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 297 - 389
Target Start/End: Complemental strand, 31160844 - 31160752
Alignment:
Q  297 caatgattaaggaatctataaataggaaatttgtcttaaaaatataagttttgacttttgattaagtaataattacatcactttttctaaaaa 389  Q
    ||||| ||||||||  ||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||    
T  31160844 caatggttaaggaaaatataaatagaaaatttgtcttaaaaatataaattttgacttttgattaagtaataattacatcactttttataaaaa 31160752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 297 - 402
Target Start/End: Original strand, 34382628 - 34382733
Alignment:
Q  297 caatgattaaggaatctataaataggaaatttgtcttaaaaatataagttttgacttttgattaagtaataattacatcactttttctaaaaagttaatt 396  Q
    ||||||||||| || |||||||||  |||||| ||||||||||||||||||| | ||||||||||  ||||||||||  ||||||| |||||||||| ||    
T  34382628 caatgattaagaaaactataaataaaaaatttatcttaaaaatataagttttaatttttgattaaacaataattacacaactttttataaaaagttactt 34382727  T
Q  397 gttttg 402  Q
    ||||||    
T  34382728 gttttg 34382733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 318 - 389
Target Start/End: Original strand, 28490665 - 28490736
Alignment:
Q  318 ataggaaatttgtcttaaaaatataagttttgacttttgattaagtaataattacatcactttttctaaaaa 389  Q
    |||| |||||||||||||||||||||||||||| ||||| ||||||||||||||||  ||||||| ||||||    
T  28490665 atagaaaatttgtcttaaaaatataagttttgatttttgcttaagtaataattacacaactttttataaaaa 28490736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 297 - 368
Target Start/End: Complemental strand, 39283788 - 39283717
Alignment:
Q  297 caatgattaaggaatctataaataggaaatttgtcttaaaaatataagttttgacttttgattaagtaataa 368  Q
    ||||| |||| ||| |||||||||| |||||| ||||||||||||||||||||| |||||||||||||||||    
T  39283788 caatggttaatgaaactataaatagaaaatttatcttaaaaatataagttttgatttttgattaagtaataa 39283717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 297 - 371
Target Start/End: Original strand, 11065862 - 11065936
Alignment:
Q  297 caatgattaaggaatctataaataggaaatttgtcttaaaaatataagttttgacttttgattaagtaataatta 371  Q
    ||||| |||||||| |||||| ||  |||||| |||| |||||||||||||||||||||||||||||||||||||    
T  11065862 caatggttaaggaaactataattataaaatttctcttgaaaatataagttttgacttttgattaagtaataatta 11065936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 303 - 416
Target Start/End: Original strand, 13969100 - 13969214
Alignment:
Q  303 ttaaggaatctataaataggaaatttgtcttaaaaatataagttttgacttttgattaagtaataattacatcactttttc-taaaaagttaattgtttt 401  Q
    |||||||||||| |||||| || |||||||| |||||||||  | | |||||| |||||||||| ||||||  | |||||| |||||| ||| |||||||    
T  13969100 ttaaggaatctacaaatagaaattttgtcttgaaaatataaaatgttacttttaattaagtaattattacacaattttttcataaaaacttacttgtttt 13969199  T
Q  402 ggttacttaaccaat 416  Q
    |||| ||||||||||    
T  13969200 ggttgcttaaccaat 13969214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 323 - 389
Target Start/End: Original strand, 45438985 - 45439051
Alignment:
Q  323 aaatttgtcttaaaaatataagttttgacttttgattaagtaataattacatcactttttctaaaaa 389  Q
    |||||| ||||||||||||||||||| |||||| ||||||| |||||| ||||||||||| ||||||    
T  45438985 aaatttatcttaaaaatataagttttaacttttaattaagtcataattgcatcactttttataaaaa 45439051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 298 - 419
Target Start/End: Original strand, 50015771 - 50015893
Alignment:
Q  298 aatgattaaggaatctataaataggaaatttgtcttaaaaatataagttttgacttttgattaagtaataattacatcactttttc-taaaaagttaatt 396  Q
    ||||||||||||||||  ||||||||| ||||||||||||||||| | | | ||||||||| ||| ||  |||| |  |||||||| |||||| ||| ||    
T  50015771 aatgattaaggaatctcaaaataggaattttgtcttaaaaatatatgatattacttttgatcaagcaacgattatacaactttttcataaaaatttattt 50015870  T
Q  397 gttttggttacttaaccaatgcc 419  Q
    ||||||| ||||||| |||||||    
T  50015871 gttttggatacttaaacaatgcc 50015893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 303 - 388
Target Start/End: Complemental strand, 48375353 - 48375268
Alignment:
Q  303 ttaaggaatctataaataggaaatttgtcttaaaaatataagttttgacttttgattaagtaataattacatcactttttctaaaa 388  Q
    ||||| || |||||||||  ||| ||||||  ||||||||||||||||| ||||||||||| ||||||||| |||||||| |||||    
T  48375353 ttaagaaaactataaatataaaaattgtctagaaaatataagttttgacatttgattaagtgataattacaccactttttataaaa 48375268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 298 - 392
Target Start/End: Complemental strand, 41936262 - 41936164
Alignment:
Q  298 aatgattaaggaatctataaataggaaatttgtcttaaaaatataa---gttttgacttttgatt-aagtaataattacatcactttttctaaaaagtt 392  Q
    ||||||| ||||| |||||||||  ||||||||||| |||||||||   |||||||||||||||| ||||||||||||||  || |||| |||||||||    
T  41936262 aatgattgaggaaactataaataaaaaatttgtcttgaaaatataagttgttttgacttttgattaaagtaataattacactacattttataaaaagtt 41936164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 327 - 410
Target Start/End: Original strand, 17995194 - 17995277
Alignment:
Q  327 ttgtcttaaaaatataagttttgacttttgattaagtaataattacatcactttttctaaaaagttaattgttttggttactta 410  Q
    ||||||||||||||||||||||  |||| ||| ||||||| ||||||||| ||||| || ||||||  ||||||||||| ||||    
T  17995194 ttgtcttaaaaatataagtttttgctttcgataaagtaattattacatcagtttttatagaaagttttttgttttggttgctta 17995277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 273 - 362
Target Start/End: Complemental strand, 35876892 - 35876802
Alignment:
Q  273 gtcttgctaaccggtgttctcaga-caatgattaaggaatctataaataggaaatttgtcttaaaaatataagttttgacttttgattaag 362  Q
    |||||||||||||||| | ||||  ||||||||||  ||  || |||||  |||||||||||||||||||||||||| |||||||||||||    
T  35876892 gtcttgctaaccggtgctttcagggcaatgattaaaaaaattagaaataaaaaatttgtcttaaaaatataagttttaacttttgattaag 35876802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 337 - 373
Target Start/End: Original strand, 27160335 - 27160371
Alignment:
Q  337 aatataagttttgacttttgattaagtaataattaca 373  Q
    |||||||||||||||||||||||||||||||||||||    
T  27160335 aatataagttttgacttttgattaagtaataattaca 27160371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 326 - 425
Target Start/End: Complemental strand, 46836288 - 46836188
Alignment:
Q  326 tttgtcttaaaaatataagttttgacttttgattaagtaataattacatcactttttct-aaaaagttaattgttttggttacttaaccaatgcctcaaa 424  Q
    |||||||| |||||||| |||||||||| ||||||||||||||||| |||| | ||| | ||||| ||| |||||||| ||  |||| ||||||| ||||    
T  46836288 tttgtcttgaaaatataggttttgacttatgattaagtaataattatatcaatgtttataaaaaaattatttgttttgattgtttaatcaatgccccaaa 46836189  T
Q  425 g 425  Q
    |    
T  46836188 g 46836188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 335 - 382
Target Start/End: Complemental strand, 27908999 - 27908952
Alignment:
Q  335 aaaatataagttttgacttttgattaagtaataattacatcacttttt 382  Q
    ||||||||| |||||||||||||||||||||||||||||  |||||||    
T  27908999 aaaatataaattttgacttttgattaagtaataattacacaacttttt 27908952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 298 - 383
Target Start/End: Original strand, 10226458 - 10226543
Alignment:
Q  298 aatgattaaggaatctataaataggaaatttgtcttaaaaatataagttttgacttttgattaagtaataattacatcactttttc 383  Q
    ||||| ||||||||||| |||||| || |||||||| |||||||||| | | | ||||||| ||||||| ||||||  ||||||||    
T  10226458 aatgagtaaggaatctacaaatagaaattttgtcttgaaaatataagatgttaattttgataaagtaatgattacacaactttttc 10226543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 298 - 383
Target Start/End: Complemental strand, 11449177 - 11449092
Alignment:
Q  298 aatgattaaggaatctataaataggaaatttgtcttaaaaatataagttttgacttttgattaagtaataattacatcactttttc 383  Q
    |||| |||| ||||||| |||||  |||||||||||||||||||||  | | | ||||||| | ||||||||||||| ||||||||    
T  11449177 aatggttaaagaatctacaaataaaaaatttgtcttaaaaatataatatgttaattttgatcatgtaataattacataactttttc 11449092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 297 - 373
Target Start/End: Original strand, 8001742 - 8001818
Alignment:
Q  297 caatgattaaggaatctataaataggaaatttgtcttaaaaatataagttttgacttttgattaagtaataattaca 373  Q
    ||||| |||||||||||| |||||| || ||| |||| |||||||||| | | ||||||||| ||||||| ||||||    
T  8001742 caatggttaaggaatctagaaatagaaattttatcttgaaaatataagatgttacttttgataaagtaatgattaca 8001818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 276 - 343
Target Start/End: Complemental strand, 40430952 - 40430884
Alignment:
Q  276 ttgctaaccggtgttctcag-acaatgattaaggaatctataaataggaaatttgtcttaaaaatataa 343  Q
    |||||||| |||||||| || |||||||||||||| |||| |||||  |||||| ||||||||||||||    
T  40430952 ttgctaacgggtgttcttaggacaatgattaaggattctagaaataaaaaatttatcttaaaaatataa 40430884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 296 - 402
Target Start/End: Original strand, 33148125 - 33148232
Alignment:
Q  296 acaatgattaaggaatctataaataggaaatttgtcttaaaaatataagttttgacttttgattaagtaataattacatcactttttc-taaaaagttaa 394  Q
    |||||| ||||||||| || |||| | || ||||||||||||||||||| |   ||||||||| ||||||| ||||||  | |||||| |||||| |||     
T  33148125 acaatggttaaggaatatacaaattgaaattttgtcttaaaaatataagatgctacttttgatcaagtaatgattacacaattttttcataaaaacttac 33148224  T
Q  395 ttgttttg 402  Q
    ||||||||    
T  33148225 ttgttttg 33148232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 298 - 380
Target Start/End: Original strand, 52762298 - 52762383
Alignment:
Q  298 aatgattaaggaatctataaataggaaatttgtcttaaaaatataagttttgacttttgattaagtaat---aattacatcacttt 380  Q
    ||||| ||||| |||||||||||  || ||||||||  |||||||| |||| ||||||||| |||||||   ||||||||||||||    
T  52762298 aatgactaaggtatctataaataaaaattttgtcttgtaaatataaattttaacttttgatcaagtaataataattacatcacttt 52762383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 303 - 416
Target Start/End: Original strand, 26890070 - 26890183
Alignment:
Q  303 ttaaggaatctataaataggaaatttgtcttaaaaatataagttttgacttttgattaagtaataattacatcactt-tttctaaaaagttaattgtttt 401  Q
    ||||| ||||||||||||  || ||||||||||| | | ||||| | |||||||| ||| || ||||||||  |||  ||| |||||| ||| |||||||    
T  26890070 ttaagaaatctataaataaaaattttgtcttaaaca-acaagttgttacttttgactaactattaattacactactcatttataaaaacttacttgtttt 26890168  T
Q  402 ggttacttaaccaat 416  Q
    |||||||||||||||    
T  26890169 ggttacttaaccaat 26890183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 298 - 371
Target Start/End: Complemental strand, 9209346 - 9209273
Alignment:
Q  298 aatgattaaggaatctataaataggaaatttgtcttaaaaatataagttttgacttttgattaagtaataatta 371  Q
    |||||||||||||||||||||||  |  ||||| || ||||||  |||||| |||| |||| ||||||||||||    
T  9209346 aatgattaaggaatctataaataaaagttttgttttgaaaataagagttttaacttatgatcaagtaataatta 9209273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 350 - 422
Target Start/End: Original strand, 33827873 - 33827945
Alignment:
Q  350 acttttgattaagtaataattacatcacttttt-ctaaaaagttaattgttttggttacttaaccaatgcctca 422  Q
    |||||| |||||||||||||||||| |||||||  |||||||||| ||  ||||||| |||||||||| |||||    
T  33827873 actttttattaagtaataattacattactttttaataaaaagttattttatttggtt-cttaaccaatacctca 33827945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 350 - 422
Target Start/End: Complemental strand, 33840092 - 33840020
Alignment:
Q  350 acttttgattaagtaataattacatcacttttt-ctaaaaagttaattgttttggttacttaaccaatgcctca 422  Q
    |||||| |||||||||||||||||| |||||||  |||||||||| ||  ||||||| |||||||||| |||||    
T  33840092 actttttattaagtaataattacattactttttaataaaaagttattttatttggtt-cttaaccaatacctca 33840020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 335 - 419
Target Start/End: Complemental strand, 38597560 - 38597475
Alignment:
Q  335 aaaatataagttttgacttttgattaagtaataattacatcactttttc-taaaaagttaattgttttggttacttaaccaatgcc 419  Q
    |||||||||| | | ||||||||||||||||| |||| |  |||||||  | |||| ||| ||||||||| |||||||||||||||    
T  38597560 aaaatataagatatcacttttgattaagtaatgattagacaacttttttattaaaacttacttgttttggatacttaaccaatgcc 38597475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 303 - 368
Target Start/End: Complemental strand, 47496928 - 47496864
Alignment:
Q  303 ttaaggaatctataaataggaaatttgtcttaaaaatataagttttgacttttgattaagtaataa 368  Q
    ||||||||| ||||||||| || ||| ||||||||||||||||| | | ||||||| |||||||||    
T  47496928 ttaaggaatttataaatagaaattttatcttaaaaatataagttgtta-ttttgatgaagtaataa 47496864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 294 - 382
Target Start/End: Original strand, 30627607 - 30627695
Alignment:
Q  294 agacaatgattaaggaatctataaataggaaatttgtcttaaaaatataagttttgacttttgattaagtaataattacatcacttttt 382  Q
    ||||| |||||||||||||||||||||| |  | ||||||  ||||||||  | | |||||| || ||||||| ||||||| |||||||    
T  30627607 agacactgattaaggaatctataaatagaatttatgtcttggaaatataacctgtcactttttataaagtaatgattacattacttttt 30627695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 303 - 371
Target Start/End: Complemental strand, 35873563 - 35873495
Alignment:
Q  303 ttaaggaatctataaataggaaatttgtcttaaaaatataagttttgacttttgattaagtaataatta 371  Q
    |||| |||||| ||||||  ||||||||||| ||||| ||| |||| |||||| || ||||||||||||    
T  35873563 ttaaagaatctttaaataaaaaatttgtcttcaaaatgtaaatttttacttttcatgaagtaataatta 35873495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 297 - 412
Target Start/End: Original strand, 46295866 - 46295982
Alignment:
Q  297 caatgattaaggaatctataaataggaaatttgtcttaaaaatataagttttgacttttgattaagtaataattacatcactttttc-taaaaagttaat 395  Q
    ||||| |||||||||||| |||||  || ||| |||| |||||||||  | | ||||||||| ||||||| || |||  |||||||| |||||| ||| |    
T  46295866 caatggttaaggaatctacaaataaaaattttatcttgaaaatataaaatgttacttttgatcaagtaatcatgacacaactttttcataaaaacttatt 46295965  T
Q  396 tgttttggttacttaac 412  Q
    |||||||| | ||||||    
T  46295966 tgttttggatgcttaac 46295982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 72; Significance: 1e-32; HSPs: 34)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 273 - 419
Target Start/End: Original strand, 2908181 - 2908328
Alignment:
Q  273 gtcttgctaaccggtgttctca-gacaatgattaaggaatctataaataggaaatttgtcttaaaaatataagttttgacttttgattaagtaataatta 371  Q
    ||||| ||||||||||| |||| | ||||| |||||||| |||||||||| ||||||||||| ||||||||| |||||| |||||| |||||||||||||    
T  2908181 gtcttactaaccggtgtcctcacggcaatggttaaggaaactataaatagaaaatttgtcttgaaaatataaattttgatttttgagtaagtaataatta 2908280  T
Q  372 catcactttttctaaaaagttaattgttttggttacttaaccaatgcc 419  Q
    || |||||| | |||||||| | || |||||||| |||||||||||||    
T  2908281 caccactttctataaaaagtcacttattttggttgcttaaccaatgcc 2908328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 273 - 418
Target Start/End: Complemental strand, 53142924 - 53142777
Alignment:
Q  273 gtcttgctaaccggtgttctcaga-caatgattaaggaatctataaataggaaatttgtcttaaaaatataagttttgacttttgattaagtaataatta 371  Q
    |||||||||||| |||| ||| || ||||| |||||||| |||||||||  ||||||||| | |||||||||||||| ||||||||||||||||||||||    
T  53142924 gtcttgctaaccagtgtcctcggaacaatggttaaggaagctataaataaaaaatttgtcatgaaaatataagttttaacttttgattaagtaataatta 53142825  T
Q  372 catca-ctttttctaaaaagttaattgttttggttacttaaccaatgc 418  Q
    |||||  ||||| |||||||||| |||||| |||| ||||||||||||    
T  53142824 catcatttttttataaaaagttatttgtttcggttgcttaaccaatgc 53142777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 297 - 420
Target Start/End: Original strand, 16831096 - 16831219
Alignment:
Q  297 caatgattaaggaatctataaataggaaatttgtcttaaaaatataagttttgacttttgattaagtaataattacatcactttttctaaaaagttaatt 396  Q
    ||||| ||||| || |||||||||  |||||||| |||||||||||| ||||||||||||||||||||||||||| |  ||||||| |||||||||| ||    
T  16831096 caatggttaagaaaactataaatataaaatttgttttaaaaatataaattttgacttttgattaagtaataattatactactttttataaaaagttattt 16831195  T
Q  397 gttttggttacttaaccaatgcct 420  Q
    ||||||||| ||||| ||||||||    
T  16831196 gttttggttgcttaatcaatgcct 16831219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 303 - 416
Target Start/End: Complemental strand, 55090892 - 55090779
Alignment:
Q  303 ttaaggaatctataaataggaaatttgtcttaaaaatataagttttgacttttgattaagtaataattacatcactttttctaaaaagttaattgttttg 402  Q
    |||||||| ||||||||   ||||||||||| ||||||||||||||||||||||||||||| |||||||||  ||||||| |||||||||| |||||||     
T  55090892 ttaaggaaactataaatgaaaaatttgtcttgaaaatataagttttgacttttgattaagttataattacacaactttttataaaaagttacttgtttta 55090793  T
Q  403 gttacttaaccaat 416  Q
    ||| ||||||||||    
T  55090792 gttgcttaaccaat 55090779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 274 - 404
Target Start/End: Original strand, 28299261 - 28299392
Alignment:
Q  274 tcttgctaaccggtgttctca-gacaatgattaaggaatctataaataggaaatttgtcttaaaaatataagttttgacttttgattaagtaataattac 372  Q
    |||| |||||||||||||| | ||||||| ||||||||  ||||||||| |||||| | || ||||||||||||||| ||||||||||| ||||||||||    
T  28299261 tctttctaaccggtgttcttatgacaatggttaaggaaattataaatagaaaatttatattgaaaatataagttttgtcttttgattaaataataattac 28299360  T
Q  373 atcactttttctaaaaagttaattgttttggt 404  Q
    ||||| |||| |||||||||| ||| ||||||    
T  28299361 atcacattttataaaaagttacttgctttggt 28299392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 323 - 411
Target Start/End: Complemental strand, 19248980 - 19248892
Alignment:
Q  323 aaatttgtcttaaaaatataagttttgacttttgattaagtaataattacatcactttttctaaaaagttaattgttttggttacttaa 411  Q
    |||||||||||||||||||||||||||| |||| |||||||||| ||||||||||||||| |||||| ||| ||||||||||| |||||    
T  19248980 aaatttgtcttaaaaatataagttttgatttttaattaagtaatgattacatcactttttataaaaaattagttgttttggttccttaa 19248892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 298 - 373
Target Start/End: Original strand, 45921335 - 45921410
Alignment:
Q  298 aatgattaaggaatctataaataggaaatttgtcttaaaaatataagttttgacttttgattaagtaataattaca 373  Q
    |||| ||||||||||||||||||| ||||||||||| |||||||||||||||||| ||||||||||||||||||||    
T  45921335 aatggttaaggaatctataaatagaaaatttgtcttgaaaatataagttttgactattgattaagtaataattaca 45921410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 297 - 413
Target Start/End: Complemental strand, 9119359 - 9119242
Alignment:
Q  297 caatgattaaggaatctataaataggaaatttgtcttaaaaatataagttttgacttttgattaagtaataattacatcactttttct-aaaaagttaat 395  Q
    ||||| |||| |||||||||||||| ||||||||  | ||||||||||||||||||||||||||||||| |||||||  ||||||  | ||||| ||| |    
T  9119359 caatggttaaagaatctataaatagaaaatttgtggtgaaaatataagttttgacttttgattaagtaacaattacactacttttaataaaaaaattact 9119260  T
Q  396 tgttttggttacttaacc 413  Q
    |||||||||| |||||||    
T  9119259 tgttttggttgcttaacc 9119242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 297 - 382
Target Start/End: Original strand, 51100021 - 51100106
Alignment:
Q  297 caatgattaaggaatctataaataggaaatttgtcttaaaaatataagttttgacttttgattaagtaataattacatcacttttt 382  Q
    ||||| ||||||||||||||||||| |||||| | || |||||||||||||| ||||||||||||||||||||||||  |||||||    
T  51100021 caatggttaaggaatctataaatagaaaatttattttgaaaatataagttttaacttttgattaagtaataattacactacttttt 51100106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 312 - 419
Target Start/End: Original strand, 5645657 - 5645764
Alignment:
Q  312 ctataaataggaaatttgtcttaaaaatat-aagttttgacttttgattaagtaataattacatcactttttctaaaaagttaattgttttggttactta 410  Q
    |||||||||| ||||||||||| |||| || |||||||||||||||||||| |||||||||||  ||||||| |||||||||| ||||||| ||| ||||    
T  5645657 ctataaatagaaaatttgtcttgaaaaaattaagttttgacttttgattaaataataattacactactttttataaaaagttatttgttttagtt-ctta 5645755  T
Q  411 accaatgcc 419  Q
    || ||||||    
T  5645756 acaaatgcc 5645764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 298 - 389
Target Start/End: Complemental strand, 4860234 - 4860143
Alignment:
Q  298 aatgattaaggaatctataaataggaaatttgtcttaaaaatataagttttgacttttgattaagtaataattacatcactttttctaaaaa 389  Q
    |||| ||||||||  || |||||| |||||||| || |||||||||||||||||||||||||||||||||||||||||  ||||| ||||||    
T  4860234 aatggttaaggaaattacaaatagaaaatttgttttgaaaatataagttttgacttttgattaagtaataattacatccttttttataaaaa 4860143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 313 - 417
Target Start/End: Original strand, 37461778 - 37461881
Alignment:
Q  313 tataaataggaaatttgtcttaaaaatataagttttgacttttgattaagtaataattacatcactttttctaaaaagttaattgttttggttacttaac 412  Q
    ||||||||| ||||| || |||||||||||| |||||| |||| ||||||||||||||||| |||||||| |||||||||| || ||||  || ||||||    
T  37461778 tataaatagaaaatt-gttttaaaaatataaattttgatttttaattaagtaataattacaccactttttataaaaagttacttattttaattgcttaac 37461876  T
Q  413 caatg 417  Q
    |||||    
T  37461877 caatg 37461881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 323 - 382
Target Start/End: Complemental strand, 32325116 - 32325057
Alignment:
Q  323 aaatttgtcttaaaaatataagttttgacttttgattaagtaataattacatcacttttt 382  Q
    ||||||||||| ||||||||| ||||||||||||||||||||||||||||| ||||||||    
T  32325116 aaatttgtcttgaaaatataatttttgacttttgattaagtaataattacaccacttttt 32325057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 309 - 402
Target Start/End: Original strand, 50101287 - 50101381
Alignment:
Q  309 aatctataaataggaaatttgtcttaaaaatataagttttgacttttgattaagtaataattacatca-ctttttctaaaaagttaattgttttg 402  Q
    ||||||||||||  |||||||||||||||||||||||||||| |||||||||| || |||||| ||||  ||||| |||||| ||| ||||||||    
T  50101287 aatctataaataaaaaatttgtcttaaaaatataagttttgatttttgattaaatattaattatatcatttttttataaaaaattatttgttttg 50101381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 303 - 371
Target Start/End: Original strand, 14347124 - 14347191
Alignment:
Q  303 ttaaggaatctataaataggaaatttgtcttaaaaatataagttttgacttttgattaagtaataatta 371  Q
    |||||||| |||||||||  |||||| ||||||||||||||||||||| ||||||||||||||||||||    
T  14347124 ttaaggaaactataaataa-aaatttatcttaaaaatataagttttgatttttgattaagtaataatta 14347191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 298 - 417
Target Start/End: Complemental strand, 20775189 - 20775069
Alignment:
Q  298 aatgattaaggaatctataaataggaaatttgtcttaaaaatataagttttgacttttgattaagtaataattacatcactttttc-taaaaagttaatt 396  Q
    |||| |||| |||||||||||||  |||||||||||| ||||||||| | | | ||||||| || |||| ||||||| |||||||| |||||| ||| ||    
T  20775189 aatggttaatgaatctataaataaaaaatttgtcttagaaatataagatattatttttgatcaaataattattacataactttttcataaaaacttactt 20775090  T
Q  397 gttttggttacttaaccaatg 417  Q
    ||||||| | |||||||||||    
T  20775089 gttttggatgcttaaccaatg 20775069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 309 - 402
Target Start/End: Complemental strand, 37992958 - 37992868
Alignment:
Q  309 aatctataaataggaaatttgtcttaaaaatataagttttgacttttgattaagtaataattacatcactttttctaaaaagttaattgttttg 402  Q
    ||||||||||||| | |||||| || ||||||||| |||||| |||||||||||   ||||||||| ||||||  |||||||||| ||||||||    
T  37992958 aatctataaatagaagatttgttttgaaaatataaattttgatttttgattaag---taattacattacttttaataaaaagttacttgttttg 37992868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 296 - 419
Target Start/End: Complemental strand, 34236299 - 34236175
Alignment:
Q  296 acaatgattaaggaatctataaataggaaatttgtcttaaaaatataagttttgacttttgattaagtaataattacatcactttttct--aaaaagtta 393  Q
    |||||| |||| ||| |||||||||  ||||||||| | |||||||||| ||| |||||||||||||| |||||||||  | ||||| |  ||||| |||    
T  34236299 acaatggttaaagaaactataaataaaaaatttgtcctgaaaatataag-tttaacttttgattaagtgataattacactattttttataaaaaaaatta 34236201  T
Q  394 attgttttggttacttaaccaatgcc 419  Q
     |||||||||||  ||||||||||||    
T  34236200 cttgttttggttgtttaaccaatgcc 34236175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 297 - 371
Target Start/End: Complemental strand, 40298089 - 40298015
Alignment:
Q  297 caatgattaaggaatctataaataggaaatttgtcttaaaaatataagttttgacttttgattaagtaataatta 371  Q
    ||||| |||| ||| |||||||||| |||||| | || |||||||||||||||| |||||||||||| |||||||    
T  40298089 caatggttaatgaaactataaatagaaaatttattttgaaaatataagttttgatttttgattaagtgataatta 40298015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 330 - 382
Target Start/End: Original strand, 32653879 - 32653931
Alignment:
Q  330 tcttaaaaatataagttttgacttttgattaagtaataattacatcacttttt 382  Q
    |||||||||||||| |||| |||||||| |||||||||||||||||| |||||    
T  32653879 tcttaaaaatataaattttaacttttgaataagtaataattacatcatttttt 32653931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 303 - 381
Target Start/End: Original strand, 32543983 - 32544060
Alignment:
Q  303 ttaaggaatctataaataggaaatttgtcttaaaaatataagttttgacttttgattaagtaataattacatcactttt 381  Q
    ||||||||||||||||||  |||||||||   ||||||||| |||| ||||||||| | ||||| ||||||||||||||    
T  32543983 ttaaggaatctataaataaaaaatttgtcgagaaaatataaatttt-acttttgatcaggtaatgattacatcactttt 32544060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 330 - 376
Target Start/End: Original strand, 32651953 - 32651999
Alignment:
Q  330 tcttaaaaatataagttttgacttttgattaagtaataattacatca 376  Q
    |||||||||||||| |||| |||||||| ||||||||||||||||||    
T  32651953 tcttaaaaatataaattttaacttttgaataagtaataattacatca 32651999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 269 - 416
Target Start/End: Complemental strand, 48524640 - 48524493
Alignment:
Q  269 aagagtcttgctaaccggtgttctcaga-caatgattaaggaatctataaataggaaatttgtcttaaaaatataagttttgacttttgattaagtaata 367  Q
    ||||||||| |||||| |||  |||||| ||||||||||| || |||||||||  |||||||| |  |||||||||||||||| ||||  |||  | |||    
T  48524640 aagagtcttactaaccagtgccctcagaacaatgattaagcaaactataaataaaaaatttgtatagaaaatataagttttgattttttttta--tcata 48524543  T
Q  368 attacatca-ctttttctaaaaagttaattgttttggttacttaaccaat 416  Q
    ||||||  |  ||||| |||||||||| ||||||||||| ||||| ||||    
T  48524542 attacacaatttttttataaaaagttacttgttttggttgcttaatcaat 48524493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 297 - 358
Target Start/End: Original strand, 31089511 - 31089572
Alignment:
Q  297 caatgattaaggaatctataaataggaaatttgtcttaaaaatataagttttgacttttgat 358  Q
    ||||||||||||||||||||||||  || ||||||| ||||||||||| | | |||||||||    
T  31089511 caatgattaaggaatctataaataaaaattttgtctaaaaaatataagatgttacttttgat 31089572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 298 - 420
Target Start/End: Original strand, 22812064 - 22812187
Alignment:
Q  298 aatgattaaggaatctataaataggaaatttgtcttaaaaatataagttttgacttttgatt-aagtaataattacatcactttttctaaaaagttaatt 396  Q
    |||| |||| ||| || ||||||| | |||| | |||||||||||||||||||| ||| ||| ||||||||||||    ||||||| |||||||||  ||    
T  22812064 aatggttaaagaaactgtaaatagaatatttattttaaaaatataagttttgacgtttcattcaagtaataattatccaactttttataaaaagttgctt 22812163  T
Q  397 gttttggttacttaaccaatgcct 420  Q
    |||||  || ||||| ||||||||    
T  22812164 gttttaattgcttaatcaatgcct 22812187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 295 - 382
Target Start/End: Complemental strand, 31647841 - 31647754
Alignment:
Q  295 gacaatgattaaggaatctataaataggaaatttgtcttaaaaatataagttttgacttttgattaagtaataattacatcacttttt 382  Q
    |||| ||||||| |||||||||||||| |  | ||||||| ||||||||  | | |||||| || ||||||||||||||| |||||||    
T  31647841 gacactgattaaagaatctataaatagaatttctgtcttagaaatataaactatcactttttatcaagtaataattacattacttttt 31647754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 296 - 381
Target Start/End: Complemental strand, 21762176 - 21762093
Alignment:
Q  296 acaatgattaaggaatctataaataggaaatttgtcttaaaaatataagttttgacttttgattaagtaataattacatcactttt 381  Q
    |||||| |||| |||  ||||||||  ||||||||||||||  ||||| |||| |||||||||||| ||||||||| |||| ||||    
T  21762176 acaatggttaaagaaattataaataaaaaatttgtcttaaa--tataaattttaacttttgattaaataataattatatcattttt 21762093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 298 - 372
Target Start/End: Original strand, 22611893 - 22611967
Alignment:
Q  298 aatgattaaggaatctataaataggaaatttgtcttaaaaatataagttttgacttttgattaagtaataattac 372  Q
    |||||||||| |||||| |||||  || ||||||||||||||||||| | | ||||| ||| ||||||| |||||    
T  22611893 aatgattaagaaatctacaaatataaattttgtcttaaaaatataagatgttactttcgataaagtaatgattac 22611967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 303 - 403
Target Start/End: Complemental strand, 12095070 - 12094969
Alignment:
Q  303 ttaaggaatctataaataggaaatttgtcttaaaaatataagttttgacttttgattaagtaataattacatcactttttc-taaaaagttaattgtttt 401  Q
    |||||||||||| |||||| || ||||  || |||||||||| | | ||||||||| ||||||| ||||||  |||||||| |||||| ||| || ||||    
T  12095070 ttaaggaatctacaaatagaaattttgcattgaaaatataagatattacttttgataaagtaatgattacacaactttttcataaaaacttacttatttt 12094971  T
Q  402 gg 403  Q
    ||    
T  12094970 gg 12094969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 364 - 417
Target Start/End: Original strand, 35808568 - 35808621
Alignment:
Q  364 aataattacatcactttttctaaaaagttaattgttttggttacttaaccaatg 417  Q
    ||||||||||  ||||||| |||||||||| || |||||||| |||||||||||    
T  35808568 aataattacacaactttttataaaaagttacttattttggttgcttaaccaatg 35808621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 272 - 333
Target Start/End: Original strand, 28668388 - 28668451
Alignment:
Q  272 agtcttgctaaccggtgttctcagacaatga--ttaaggaatctataaataggaaatttgtctt 333  Q
    ||||||| ||||||||| ||||||  ||||   ||||||||||||||||||| |||||||||||    
T  28668388 agtcttgataaccggtgctctcaggtaatgtggttaaggaatctataaatagaaaatttgtctt 28668451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 303 - 416
Target Start/End: Complemental strand, 30694395 - 30694284
Alignment:
Q  303 ttaaggaatctataaataggaaatttgtcttaaaaatataagttttgacttttgattaagtaataattacatcact-ttttctaaaaagttaattgtttt 401  Q
    |||||||| | |||||||| || |||||||| |||||||||||| |   ||||||| |||||||||||| | | || |||| | |||| ||| |||||||    
T  30694395 ttaaggaaaccataaatagaaattttgtcttgaaaatataagttgt---ttttgatcaagtaataattatacctctgttttgtgaaaacttacttgtttt 30694299  T
Q  402 ggttacttaaccaat 416  Q
    |||| | ||||||||    
T  30694298 ggttgcataaccaat 30694284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 326 - 382
Target Start/End: Original strand, 41142318 - 41142374
Alignment:
Q  326 tttgtcttaaaaatataagttttgacttttgattaagtaataattacatcacttttt 382  Q
    |||||||| |||| ||||| | | |||||||||||| |||||||||||| |||||||    
T  41142318 tttgtcttgaaaaaataaggtcttacttttgattaaataataattacattacttttt 41142374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 298 - 373
Target Start/End: Complemental strand, 48400996 - 48400920
Alignment:
Q  298 aatgattaaggaat-ctataaataggaaatttgtcttaaaaatataagttttgacttttgattaagtaataattaca 373  Q
    |||||||||||||  |||||||||  |||||||| || ||||||||| |||| || ||| |||||||||||| ||||    
T  48400996 aatgattaaggaaaactataaataaaaaatttgttttgaaaatataaattttaacatttaattaagtaataactaca 48400920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 72; Significance: 1e-32; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 273 - 419
Target Start/End: Original strand, 1870464 - 1870611
Alignment:
Q  273 gtcttgctaaccggtgttctcaga-caatgattaaggaatctataaataggaaatttgtcttaaaaatataagttttgacttttgattaagtaataatta 371  Q
    |||||||||||| |||  |||||  ||||| |||||||| |||||||||| ||||||||||| |||||||||| ||||||||||||||||||||||||||    
T  1870464 gtcttgctaaccagtgccctcagggcaatggttaaggaaactataaatagaaaatttgtcttgaaaatataagctttgacttttgattaagtaataatta 1870563  T
Q  372 catcactttttctaaaaagttaattgttttggttacttaaccaatgcc 419  Q
    ||    ||||| |||||||||| ||||||| ||| |||||||||||||    
T  1870564 cacatttttttataaaaagttacttgtttttgttgcttaaccaatgcc 1870611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 297 - 415
Target Start/End: Original strand, 34501589 - 34501707
Alignment:
Q  297 caatgattaaggaatctataaataggaaatttgtcttaaaaatataagttttgacttttgattaagtaataattacatcactttttctaaaaagttaatt 396  Q
    ||||||||||||||||||||||||  ||| ||||||||||||||||| |||||| |||| |||||||||||||||||  | ||||| |||||||||| ||    
T  34501589 caatgattaaggaatctataaataaaaaagttgtcttaaaaatataatttttgattttttattaagtaataattacacaattttttataaaaagttattt 34501688  T
Q  397 gttttggttacttaaccaa 415  Q
    | ||||||| |||||||||    
T  34501689 gatttggttgcttaaccaa 34501707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 273 - 388
Target Start/End: Complemental strand, 33635655 - 33635540
Alignment:
Q  273 gtcttgctaaccggtgttctcaga-caatgattaaggaatctataaataggaaatttgtcttaaaaatataagttttgacttttgattaagtaataatta 371  Q
    ||||||||||||||||  |||||| ||||| ||| ||||| |||||||   ||||||||||| ||||||||| |||||||||||||||||||||||||||    
T  33635655 gtcttgctaaccggtgccctcagagcaatgttta-ggaatttataaatgaaaaatttgtcttgaaaatataaattttgacttttgattaagtaataatta 33635557  T
Q  372 catcactttttctaaaa 388  Q
    ||||||||||| |||||    
T  33635556 catcactttttataaaa 33635540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 298 - 416
Target Start/End: Complemental strand, 13835953 - 13835835
Alignment:
Q  298 aatgattaaggaatctataaataggaaatttgtcttaaaaatataagttttgacttttgattaagtaataattacatcactttttctaaaaagttaattg 397  Q
    |||| ||||| || |||||||||| |||| |||||| ||||||||||||||||||||| |||||||||||||||||  | ||||| |||||| ||| ||     
T  13835953 aatggttaagaaaactataaatagaaaatctgtcttgaaaatataagttttgactttttattaagtaataattacactattttttataaaaaattattta 13835854  T
Q  398 ttttggttacttaaccaat 416  Q
    ||||| || ||||||||||    
T  13835853 ttttgcttgcttaaccaat 13835835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 297 - 392
Target Start/End: Original strand, 5444487 - 5444582
Alignment:
Q  297 caatgattaaggaatctataaataggaaatttgtcttaaaaatataagttttgacttttgattaagtaataattacatcactttttctaaaaagtt 392  Q
    |||||||||| ||| |||||||||  || |||||||| ||||||||||||||||||||| |||||||||||| ||||  ||||||| ||| |||||    
T  5444487 caatgattaaagaaactataaataaaaattttgtcttgaaaatataagttttgacttttaattaagtaataaatacacaactttttataataagtt 5444582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 326 - 423
Target Start/End: Original strand, 43131783 - 43131881
Alignment:
Q  326 tttgtcttaaaaatataagttttgacttttgattaagtaataattaca-tcactttttctaaaaagttaattgttttggttacttaaccaatgcctcaa 423  Q
    |||||||||||||| |||||||  ||||||||| |||||||||||||| |  |||||| |||||| ||| |||||||||||  |||| |||||||||||    
T  43131783 tttgtcttaaaaatgtaagtttatacttttgatcaagtaataattacactacctttttataaaaacttacttgttttggttgtttaatcaatgcctcaa 43131881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 298 - 370
Target Start/End: Complemental strand, 29525724 - 29525652
Alignment:
Q  298 aatgattaaggaatctataaataggaaatttgtcttaaaaatataagttttgacttttgattaagtaataatt 370  Q
    |||| ||||| ||||||||||||  || ||| ||| |||||||||| ||||||||||||||||||||||||||    
T  29525724 aatggttaagaaatctataaataaaaattttatctcaaaaatataaattttgacttttgattaagtaataatt 29525652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 268 - 412
Target Start/End: Complemental strand, 40346856 - 40346710
Alignment:
Q  268 aaagagtcttgctaaccggtgttctcaga-caatgattaaggaatctataaataggaaatttgtcttaaaaatataagttttgacttttgattaagtaat 366  Q
    ||||||||||||||||||||| |||||||  |||| |||||||||||| | |||| || ||||| || |||||||||| | | | ||||||| || ||||    
T  40346856 aaagagtcttgctaaccggtgctctcagagtaatggttaaggaatctacatatagaaattttgtattgaaaatataagatgttatttttgatcaaataat 40346757  T
Q  367 aattacatcactttttc-taaaaagttaattgttttggttacttaac 412  Q
     ||| ||  |||||||| |||||| ||| || |||||| ||||||||    
T  40346756 gattgcacaactttttcataaaaacttacttattttggatacttaac 40346710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 303 - 418
Target Start/End: Complemental strand, 23453457 - 23453340
Alignment:
Q  303 ttaaggaatctataaataggaaatttgtcttaaaaatataagttttgacttttgattaagtaataattacatcactttttc--taaaaagttaattgttt 400  Q
    |||||||||||| |||||  || |||||||| |||||||||| | | ||||||||| || |||  ||||||  ||||||||  |||||| ||  ||||||    
T  23453457 ttaaggaatctacaaataaaaattttgtcttgaaaatataagatgttacttttgatcaaataaagattacacaactttttccataaaaacttgcttgttt 23453358  T
Q  401 tggttacttaaccaatgc 418  Q
    ||| ||||||||||||||    
T  23453357 tggatacttaaccaatgc 23453340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 300 - 424
Target Start/End: Complemental strand, 27896578 - 27896453
Alignment:
Q  300 tgattaaggaatctataaataggaaatttgtcttaaaaatataagttttgacttttgattaagtaataattacatcacttttt-ctaaaaagttaattgt 398  Q
    ||||||||| ||| |  ||||| |||||||| ||| ||||||||| | | |||||||||| |||||||||||||  |||||||  | |||| ||| || |    
T  27896578 tgattaaggtatccaagaatagaaaatttgttttagaaatataagctgttacttttgatttagtaataattacacaactttttaattaaaacttacttat 27896479  T
Q  399 tttggttacttaaccaatgcctcaaa 424  Q
    |||||||  ||||||| |||||||||    
T  27896478 tttggttgtttaaccactgcctcaaa 27896453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 296 - 401
Target Start/End: Complemental strand, 13618290 - 13618193
Alignment:
Q  296 acaatgattaaggaatctataaataggaaatttgtcttaaaaatataagttttgacttttgattaagtaataattacatcactttttctaaaaagttaat 395  Q
    |||||| ||||| ||  ||||||||  ||| |||||||||||||||||||||||||| |||        ||||||||| |||||||| |||||||||| |    
T  13618290 acaatggttaagaaaattataaatataaaaattgtcttaaaaatataagttttgactcttg--------ataattacaccactttttataaaaagttatt 13618199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 294 - 382
Target Start/End: Original strand, 38193671 - 38193759
Alignment:
Q  294 agacaatgattaaggaatctataaataggaaatttgtcttaaaaatataagttttgacttttgattaagtaataattacatcacttttt 382  Q
    ||||| |||||||||||||| | ||||| || ||| | |||||||| |||||||| | ||||||| || |||||||||||  |||||||    
T  38193671 agacattgattaaggaatcttttaatagaaattttattttaaaaatgtaagtttttatttttgatgaaataataattacactacttttt 38193759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 303 - 416
Target Start/End: Original strand, 13738396 - 13738510
Alignment:
Q  303 ttaaggaatctataaataggaaatttgtcttaaaaatataagttttgacttttgattaagtaataattacatca-ctttttctaaaaagttaattgtttt 401  Q
    ||||||||||||||||||  || ||||| || |||||||||| | | |||| |||| ||||||| ||||||  |  ||||| |||||| ||| |||||||    
T  13738396 ttaaggaatctataaataaaaattttgttttgaaaatataagatgttacttctgataaagtaatgattacacaatttttttataaaaacttacttgtttt 13738495  T
Q  402 ggttacttaaccaat 416  Q
    || | ||||||||||    
T  13738496 ggatgcttaaccaat 13738510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 296 - 346
Target Start/End: Complemental strand, 30905461 - 30905411
Alignment:
Q  296 acaatgattaaggaatctataaataggaaatttgtcttaaaaatataagtt 346  Q
    |||||| ||||||||  ||||||||| || |||||||||||||||||||||    
T  30905461 acaatggttaaggaaattataaatagcaactttgtcttaaaaatataagtt 30905411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 294 - 383
Target Start/End: Complemental strand, 18717971 - 18717882
Alignment:
Q  294 agacaatgattaaggaatctataaataggaaatttgtcttaaaaatataagttttgacttttgattaagtaataattacatcactttttc 383  Q
    ||||| || ||||||||| || |||||| || ||| | ||||||||||||| | | ||||||||| ||||||| ||||||  ||||||||    
T  18717971 agacattggttaaggaatttacaaatagaaattttattttaaaaatataagatgttacttttgatcaagtaatgattacacaactttttc 18717882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 303 - 419
Target Start/End: Original strand, 40574144 - 40574261
Alignment:
Q  303 ttaaggaatctataaataggaaatttgtcttaaaaatataagttttgacttttgattaagtaataattacatcactttttc-taaaaagttaattgtttt 401  Q
    |||||||||||| |||||| || ||||||||  ||||||||  | | |||||||||  |||||||||||||  |||||||| | ||||  || |||||||    
T  40574144 ttaaggaatctacaaatagaaattttgtcttggaaatataaaatgtaacttttgatagagtaataattacacaactttttcatgaaaatgtacttgtttt 40574243  T
Q  402 ggttacttaaccaatgcc 419  Q
    || | |||||||| ||||    
T  40574244 ggatgcttaaccattgcc 40574261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 302 - 382
Target Start/End: Original strand, 4623730 - 4623810
Alignment:
Q  302 attaaggaatctataaataggaaatttgtcttaaaaatataagttttgacttttgattaagtaataattacatcacttttt 382  Q
    ||||| |||||||||||||  |||||||| |||||| |||||||| | |||||| |  || ||||||||||| || |||||    
T  4623730 attaaagaatctataaataaaaaatttgtgttaaaattataagttgttacttttaaccaactaataattacaccaattttt 4623810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 70; Significance: 2e-31; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 295 - 416
Target Start/End: Original strand, 34228251 - 34228372
Alignment:
Q  295 gacaatgattaaggaatctataaataggaaatttgtcttaaaaatataagttttgacttttgattaagtaataattacatcactttttctaaaaagttaa 394  Q
    ||||||| |||||||| |||||||||  ||||||||||||||||||||| ||||||||||||||||| |||||||| ||||||||||| ||||||||||     
T  34228251 gacaatggttaaggaaactataaataaaaaatttgtcttaaaaatataaattttgacttttgattaaataataatttcatcactttttataaaaagttac 34228350  T
Q  395 ttgttttggttacttaaccaat 416  Q
    | |||||  || ||||||||||    
T  34228351 tcgttttaattgcttaaccaat 34228372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 298 - 411
Target Start/End: Original strand, 48252267 - 48252380
Alignment:
Q  298 aatgattaaggaatctataaataggaaatttgtcttaaaaatataagttttgacttttgattaagtaataattacatcactttttctaaaaagttaattg 397  Q
    |||| ||||||||||||||||||  |||||| |||| ||||||||||||||||||||||| ||| ||||||| |||||||||||||||||||||||  ||    
T  48252267 aatggttaaggaatctataaataaaaaatttatcttgaaaatataagttttgacttttgagtaaataataatgacatcactttttctaaaaagttacgtg 48252366  T
Q  398 ttttggttacttaa 411  Q
    ||||| ||||||||    
T  48252367 ttttgattacttaa 48252380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 295 - 373
Target Start/End: Original strand, 41287876 - 41287954
Alignment:
Q  295 gacaatgattaaggaatctataaataggaaatttgtcttaaaaatataagttttgacttttgattaagtaataattaca 373  Q
    |||||||||||||||| |||||||||| |||||||| ||||||||||||||||||| ||||||||||||||||||||||    
T  41287876 gacaatgattaaggaaactataaatagaaaatttgttttaaaaatataagttttgatttttgattaagtaataattaca 41287954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 295 - 416
Target Start/End: Complemental strand, 4020218 - 4020096
Alignment:
Q  295 gacaatgattaaggaatctataaataggaaatttgtcttaaaaatataagttttgacttttgattaagtaataattacatcactttttc-taaaaagtta 393  Q
    ||||||| |||||||||||| |||||| || |||||||| |||||||||  | | | ||||||||||||||| ||||||  | |||||| |||||| |||    
T  4020218 gacaatggttaaggaatctacaaatagaaattttgtcttgaaaatataaaatgttaattttgattaagtaattattacacaattttttcataaaaactta 4020119  T
Q  394 attgttttggttacttaaccaat 416  Q
     ||||||||||||||||||||||    
T  4020118 cttgttttggttacttaaccaat 4020096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 325 - 417
Target Start/End: Original strand, 45408692 - 45408784
Alignment:
Q  325 atttgtcttaaaaatataagttttgacttttgattaagtaataattacatcactttttctaaaaa-gttaattgttttggttacttaaccaatg 417  Q
    ||||||||||||||||||| ||||||| ||||||||||||||| ||||| || ||||| |||||| |||| ||||||| |||  ||||||||||    
T  45408692 atttgtcttaaaaatataacttttgac-tttgattaagtaatatttacaccattttttataaaaatgttacttgtttttgttgtttaaccaatg 45408784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 364 - 423
Target Start/End: Complemental strand, 28940624 - 28940566
Alignment:
Q  364 aataattacatcactttttctaaaaagttaattgttttggttacttaaccaatgcctcaa 423  Q
    ||||||||||||| |||||||||||||||| ||||||||| |||||||||||||| ||||    
T  28940624 aataattacatca-tttttctaaaaagttatttgttttggctacttaaccaatgcatcaa 28940566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 297 - 366
Target Start/End: Original strand, 19202180 - 19202249
Alignment:
Q  297 caatgattaaggaatctataaataggaaatttgtcttaaaaatataagttttgacttttgattaagtaat 366  Q
    ||||| |||||||||| ||||||||  ||||| |||| ||||||||||||||| ||||||||||| ||||    
T  19202180 caatggttaaggaatccataaatagataatttttcttgaaaatataagttttggcttttgattaaataat 19202249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 273 - 419
Target Start/End: Original strand, 635675 - 635823
Alignment:
Q  273 gtcttgctaaccggtgttctca-gacaatgattaaggaatctataaataggaaatttgtcttaaaaatataagttttgacttttgattaagtaataatta 371  Q
    ||||||||||||  || ||||| ||||||| |||||||||||| |||||| || |||||||| || | ||||| | | |||||||||||| |||| ||||    
T  635675 gtcttgctaaccattgctctcatgacaatggttaaggaatctacaaatagaaattttgtcttgaataaataagatgttacttttgattaaataatgatta 635774  T
Q  372 catcactttt-tctaaaaagttaattgttttggttacttaaccaatgcc 419  Q
    ||  ||||||   |||||| |||  |||||||| | |||||||||||||    
T  635775 cacaacttttcaataaaaacttatatgttttggatgcttaaccaatgcc 635823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 312 - 414
Target Start/End: Original strand, 2127363 - 2127461
Alignment:
Q  312 ctataaataggaaatttgtcttaaaaatataagttttgacttttgattaagtaataattacatcactttttctaaaaagttaattgttttggttacttaa 411  Q
    |||||||||  ||||||||||||| |||||   |||||| ||||||||||||||||||||||  || |||| |||||| ||| || |||||||| |||||    
T  2127363 ctataaataaaaaatttgtcttaagaatat---ttttgatttttgattaagtaataattacacgac-ttttataaaaaattacttattttggttgcttaa 2127458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 303 - 416
Target Start/End: Complemental strand, 29032524 - 29032410
Alignment:
Q  303 ttaaggaatctataaataggaaatttgtcttaaaaatataagttttgacttttgattaagtaataattacatcactttttc-taaaaagttaattgtttt 401  Q
    ||||||| |||| ||| || || ||||||||||||||||||| | | ||||||||| ||||||| ||||||  |||||||| |||||| ||  |||||||    
T  29032524 ttaaggattctacaaacagaaattttgtcttaaaaatataagatgttacttttgatcaagtaatgattacacaactttttcataaaaacttgcttgtttt 29032425  T
Q  402 ggttacttaaccaat 416  Q
     | ||||||| ||||    
T  29032424 agatacttaatcaat 29032410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 303 - 382
Target Start/End: Original strand, 44291231 - 44291310
Alignment:
Q  303 ttaaggaatctataaataggaaatttgtcttaaaaatataagttttgacttttgattaagtaataattacatcacttttt 382  Q
    ||||||||||||||||||| |  | ||||||  ||||||||  | | |||||| |||||||||||||||||| |||||||    
T  44291231 ttaaggaatctataaatagaatttctgtcttggaaatataaactgtcactttttattaagtaataattacattacttttt 44291310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 295 - 365
Target Start/End: Original strand, 25958052 - 25958122
Alignment:
Q  295 gacaatgattaaggaatctataaataggaaatttgtcttaaaaatataagttttgacttttgattaagtaa 365  Q
    |||||| |||||| |||||| | |||  |||||||||||||||||||||| | | ||||||||| ||||||    
T  25958052 gacaataattaagaaatctacatataaaaaatttgtcttaaaaatataagatgttacttttgataaagtaa 25958122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 294 - 371
Target Start/End: Original strand, 1711916 - 1711993
Alignment:
Q  294 agacaatgattaaggaatctataaataggaaatttgtcttaaaaatataagttttgacttttgattaagtaataatta 371  Q
    |||||||| |||||||||||| || ||  || |||||||| |||||||||| | | || ||||| |||||||||||||    
T  1711916 agacaatggttaaggaatctaaaattataaattttgtcttgaaaatataagatgttacatttgactaagtaataatta 1711993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 300 - 373
Target Start/End: Complemental strand, 4490894 - 4490822
Alignment:
Q  300 tgattaaggaatctataaataggaaatttgtcttaaaaatataagttttgacttttgattaagtaataattaca 373  Q
    |||||||||||||   |||||| || ||||||| |||||||||| |||| ||||||||| || |||||||||||    
T  4490894 tgattaaggaatcataaaatagaaattttgtct-aaaaatataaatttttacttttgataaaataataattaca 4490822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 316 - 417
Target Start/End: Complemental strand, 8326236 - 8326135
Alignment:
Q  316 aaataggaaatttgtcttaaaaatataagttttgacttttgattaagtaataattacatcactttttctaaaaagttaattgttttggttacttaaccaa 415  Q
    |||||| || ||||| ||||||||||||  | | ||||||||| ||| ||| |||||| |||||||  |||||| ||| ||||||| | ||||||| |||    
T  8326236 aaatagaaattttgttttaaaaatataatatgttacttttgatcaagcaatgattacaccacttttcataaaaacttatttgttttagatacttaatcaa 8326137  T
Q  416 tg 417  Q
    ||    
T  8326136 tg 8326135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 366 - 419
Target Start/End: Original strand, 19202398 - 19202451
Alignment:
Q  366 taattacatcactttttctaaaaagttaattgttttggttacttaaccaatgcc 419  Q
    ||||||||  ||||||  |||||||||||||||||| ||| |||||||||||||    
T  19202398 taattacactacttttaataaaaagttaattgttttagttgcttaaccaatgcc 19202451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 312 - 373
Target Start/End: Complemental strand, 23877789 - 23877728
Alignment:
Q  312 ctataaataggaaatttgtcttaaaaatataagttttgacttttgattaagtaataattaca 373  Q
    |||||||||  ||||||  ||| || |||||||||||||||||| |||||| ||||||||||    
T  23877789 ctataaataaaaaatttaccttgaatatataagttttgacttttaattaagcaataattaca 23877728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 309 - 382
Target Start/End: Complemental strand, 35322113 - 35322042
Alignment:
Q  309 aatctataaataggaaatttgtcttaaaaatataagttttgacttttgattaagtaataattacatcacttttt 382  Q
    ||||||||||||| || ||||||||| ||||||||  ||  |||||| |||||||||||||||||| |||||||    
T  35322113 aatctataaatag-aattttgtcttagaaatataaacttc-actttttattaagtaataattacattacttttt 35322042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 303 - 418
Target Start/End: Original strand, 15671118 - 15671233
Alignment:
Q  303 ttaaggaatctataaataggaaatttgtcttaaaaatataagttttgacttttgattaagtaataattacatcacttttt-ctaaaaagttaattgtttt 401  Q
    ||||||||||||||||||  |  ||||||||  ||||||||  | | |||||| || ||||||||||||||| |||||||  |||||| ||| ||  |||    
T  15671118 ttaaggaatctataaataaaatttttgtcttcgaaatataaactgtcactttttatcaagtaataattacattactttttaataaaaacttacttcattt 15671217  T
Q  402 ggttacttaaccaatgc 418  Q
    |||| ||||||||||||    
T  15671218 ggtt-cttaaccaatgc 15671233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0123 (Bit Score: 51; Significance: 5e-20; HSPs: 1)
Name: scaffold0123
Description:

Target: scaffold0123; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 303 - 420
Target Start/End: Complemental strand, 17646 - 17528
Alignment:
Q  303 ttaaggaatctataaataggaaatttgtcttaaaaatataagttttgacttttgattaagtaataattacatcactttttct-aaaaagttaattgtttt 401  Q
    ||||||||||||||||||| |||||||  || ||||||||||||| || |||||||||| ||||||||| || ||||||  | ||||||||| |||||||    
T  17646 ttaaggaatctataaatagaaaatttgagttgaaaatataagtttcgaattttgattaattaataattatattacttttaataaaaaagttatttgtttt 17547  T
Q  402 ggttacttaaccaatgcct 420  Q
    | ||  |||||||||||||    
T  17546 gattgtttaaccaatgcct 17528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0017 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 335 - 416
Target Start/End: Complemental strand, 31547 - 31466
Alignment:
Q  335 aaaatataagttttgacttttgattaagtaataattacatcactttttctaaaaagttaattgttttggttacttaaccaat 416  Q
    ||||||||||||||| ||||||||||| ||||||||| |    ||||| |||||||||| ||||||||||| ||||||||||    
T  31547 aaaatataagttttgccttttgattaactaataattataaatttttttataaaaagttacttgttttggttgcttaaccaat 31466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0204 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0204
Description:

Target: scaffold0204; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 274 - 357
Target Start/End: Original strand, 15337 - 15421
Alignment:
Q  274 tcttgctaaccggtgttctcag-acaatgattaaggaatctataaataggaaatttgtcttaaaaatataagttttgacttttga 357  Q
    ||||||||||| ||| |||||| | |||||||||||||| ||||||||| |  |||||||| |||||||||| | | ||||||||    
T  15337 tcttgctaaccagtgctctcaggataatgattaaggaatttataaatagaatttttgtcttgaaaatataagatgttacttttga 15421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0039 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 295 - 373
Target Start/End: Original strand, 29980 - 30058
Alignment:
Q  295 gacaatgattaaggaatctataaataggaaatttgtcttaaaaatataagttttgacttttgattaagtaataattaca 373  Q
    |||||| ||||||||||||| |||||| || ||| | || |||||||||| | | |||||| ||||| |||||||||||    
T  29980 gacaataattaaggaatctacaaatagaaactttattttgaaaatataagatgttacttttaattaaataataattaca 30058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 298 - 371
Target Start/End: Complemental strand, 12996 - 12923
Alignment:
Q  298 aatgattaaggaatctataaataggaaatttgtcttaaaaatataagttttgacttttgattaagtaataatta 371  Q
    |||| |||| ||| |||||||||| ||| || | |||||||||||| |||  |||||||||| |||||||||||    
T  12996 aatggttaaagaaactataaatagaaaaattattttaaaaatataaatttaaacttttgatttagtaataatta 12923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 297 - 365
Target Start/End: Complemental strand, 120787 - 120719
Alignment:
Q  297 caatgattaaggaatctataaataggaaatttgtcttaaaaatataagttttgacttttgattaagtaa 365  Q
    ||||| |||||||||||| |||||| || |||||||| |||||||||| | | ||||||| | ||||||    
T  120787 caatggttaaggaatctacaaatagaaattttgtcttgaaaatataagatgtcacttttggtaaagtaa 120719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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