View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9090_low_38 (Length: 437)
Name: NF9090_low_38
Description: NF9090
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9090_low_38 |
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Alignment Details
Target: chr2 (Bit Score: 295; Significance: 1e-165; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 295; E-Value: 1e-165
Query Start/End: Original strand, 18 - 414
Target Start/End: Original strand, 42068204 - 42068604
Alignment:
| Q |
18 |
gtttcaaacatggaagtattgattggatcgtggttgagaggtctatgtgaagcatatgtttatcgtgaagtaaatagtgttgttgattggtcaattggca |
117 |
Q |
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| T |
42068204 |
gtttcaaacatggaagtattgattggatcgtggttgagaggtctatgtgaagcat--gtttatcgtgaagtaaatagtgttgttgattggtcaattggca |
42068301 |
T |
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| Q |
118 |
aactatactcagaatcaatactac--tctctatcttctatcacccctcaagtgggttgtatttttgtttgctcatgaagggag---ctcgggttccacgt |
212 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||| |
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| T |
42068302 |
aactatactcagaatcaatactaccctctctatcttctatcacccctcaagtgggttgtatttttgtttgatcatgaagggaggagctcgggttccacgt |
42068401 |
T |
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| Q |
213 |
tgaatcaagggcaaccatataaatgatttaaacataatattttaacgtaaaatcttaatacattttgtatatgggtcatctgatatattgtttgacattc |
312 |
Q |
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|||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||| | |||||||||||||||||||| ||||||| ||||||||| |
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| T |
42068402 |
tgaatcaagggcaatcatataaatgagttaaacataatattttaacgtaaaatcttaagatattttgtatatgggtcatctcgtatattgcttgacattc |
42068501 |
T |
|
| Q |
313 |
acttttttatttaatttgcatgatatttttaacttacttgccacaacaatctcctttgactgccacggttggatcat-gggggtcttagagaataattca |
411 |
Q |
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||||||||||||||| ||||||| | || ||||| ||||||||||||||||||| || ||||||| ||||||||||| |||||||||||||||||||||| |
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| T |
42068502 |
acttttttatttaatgtgcatgagacttctaactcacttgccacaacaatctccctttactgccatggttggatcatggggggtcttagagaataattca |
42068601 |
T |
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| Q |
412 |
cat |
414 |
Q |
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| T |
42068602 |
cat |
42068604 |
T |
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